Effects of agricultural management on phyllosphere fungal diversity in vineyards and the association with adjacent native forests.

Abstract:

:Agriculture is one of the main drivers of land conversion, and agriculture practices can impact on microbial diversity. Here we characterized the phyllosphere fungal diversity associated with Carménère grapevines under conventional and organic agricultural management. We also explored the fungal diversity present in the adjacent sclerophyllous forests to explore the potential role of native forest on vineyard phyllosphere. After conducting D2 and ITS2 amplicon sequencing, we found that fungal diversity indices did not change between conventional and organic vineyards, but community structure was sensitive to the agricultural management. On the other hand, we found a high proportion of shared fungal OTUs between vineyards and native forests. In addition, both habitats had similar levels of fungal diversity despite forest samples were derived from multiple plant species. In contrast, the community structure was different in both habitats. Interestingly, the native forest had more unidentified species and unique OTUs than vineyards. Forest dominant species were Aureobasidium pullulans and Endoconidioma populi, whereas Davidiella tassiana, Didymella sp., and Alternaria eichhorniae were more abundant in vineyards. Overall, this study argues that a better understanding of the relationship native forests and agroecosystems is needed for maintaining and enhancing ecosystem services provided by natural ecosystems. Finally, knowledge of microbial communities living in the Chilean Mediterranean biome is needed for appropriate conservation management of these biomes and their classification as biodiversity hotspots.

journal_name

PeerJ

journal_title

PeerJ

authors

Castañeda LE,Miura T,Sánchez R,Barbosa O

doi

10.7717/peerj.5715

subject

Has Abstract

pub_date

2018-10-29 00:00:00

pages

e5715

issn

2167-8359

pii

5715

journal_volume

6

pub_type

杂志文章

相关文献

PeerJ文献大全
  • Using trace elements to identify the geographic origin of migratory bats.

    abstract::The expansion of the wind energy industry has had benefits in terms of increased renewable energy production but has also led to increased mortality of migratory bats due to interactions with wind turbines. A key question that could guide bat-related management activities is identifying the geographic origin of bats k...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10082

    authors: Wieringa JG,Nagel J,Nelson DM,Carstens BC,Gibbs HL

    更新日期:2020-10-19 00:00:00

  • Repetitive low intensity magnetic field stimulation in a neuronal cell line: a metabolomics study.

    abstract::Low intensity repetitive magnetic stimulation of neural tissue modulates neuronal excitability and has promising therapeutic potential in the treatment of neurological disorders. However, the underpinning cellular and biochemical mechanisms remain poorly understood. This study investigates the behavioural effects of l...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4501

    authors: Hong I,Garrett A,Maker G,Mullaney I,Rodger J,Etherington SJ

    更新日期:2018-03-12 00:00:00

  • Modeling and analysis of the impacts of jet lag on circadian rhythm and its role in tumor growth.

    abstract::Circadian rhythms maintain a 24 h oscillation pattern in metabolic, physiological and behavioral processes in all living organisms. Circadian rhythms are organized as biochemical networks located in hypothalamus and peripheral tissues. Rhythmicity in the expression of circadian clock genes plays a vital role in regula...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4877

    authors: Hassan A,Ahmad J,Ashraf H,Ali A

    更新日期:2018-06-06 00:00:00

  • How smartphone usage correlates with social anxiety and loneliness.

    abstract:INTRODUCTION:Early detection of social anxiety and loneliness might be useful to prevent substantial impairment in personal relationships. Understanding the way people use smartphones can be beneficial for implementing an early detection of social anxiety and loneliness. This paper examines different types of smartphon...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2197

    authors: Gao Y,Li A,Zhu T,Liu X,Liu X

    更新日期:2016-07-12 00:00:00

  • Intra-individual heteroplasmy in the Gentiana tongolensis plastid genome (Gentianaceae).

    abstract::Chloroplasts are typically inherited from the female parent and are haploid in most angiosperms, but rare intra-individual heteroplasmy in plastid genomes has been reported in plants. Here, we report an example of plastome heteroplasmy and its characteristics in Gentiana tongolensis (Gentianaceae). The plastid genome ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8025

    authors: Sun SS,Zhou XJ,Li ZZ,Song HY,Long ZC,Fu PC

    更新日期:2019-11-27 00:00:00

  • Effectiveness of small road tunnels and fences in reducing amphibian roadkill and barrier effects at retrofitted roads in Sweden.

    abstract::Schemes to reduce road impacts on amphibians have been implemented for decades in Europe, yet, several aspects on the effectiveness of such schemes remain poorly understood. Particularly in northern Europe, including Sweden, there is a lack of available information on road mitigation for amphibians, which is hampering...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7518

    authors: Helldin JO,Petrovan SO

    更新日期:2019-08-26 00:00:00

  • A new p-terphenyl derivative from the insect-derived fungus Aspergillus candidus Bdf-2 and the synergistic effects of terphenyllin.

    abstract::A new p-terphenyl derivative 4″-deoxy-2'-methoxyterphenyllin (1), along with six known p-terphenyl derivatives (2-7), a known flavonoid derivative dechlorochlorflavonin (8) and a known fellutanine A (9), were isolated from the insect-derived strain of the fungus Aspergillus candidus Bdf-2, associated with Blaptica dub...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8221

    authors: Shan T,Wang Y,Wang S,Xie Y,Cui Z,Wu C,Sun J,Wang J,Mao Z

    更新日期:2020-01-02 00:00:00

  • Chemical analysis of callus extracts from toxic and non-toxic varieties of Jatropha curcas L.

    abstract::Jatropha curcas L. belongs to Euphorbiaceae family, and it synthesizes flavonoid and diterpene compounds that have showed antioxidant, anti-inflammatory, anticancer, antiviral, antimicrobial, antifungal and insecticide activity. Seeds of this plant accumulate phorbol esters, which are tigliane type diterpenes, reporte...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10172

    authors: Leyva-Padrón G,Vanegas-Espinoza PE,Evangelista-Lozano S,Del Villar-Martínez AA,Bazaldúa C

    更新日期:2020-11-11 00:00:00

  • Genomic analysis of P elements in natural populations of Drosophila melanogaster.

    abstract::The Drosophila melanogaster P transposable element provides one of the best cases of horizontal transfer of a mobile DNA sequence in eukaryotes. Invasion of natural populations by the P element has led to a syndrome of phenotypes known as P-M hybrid dysgenesis that emerges when strains differing in their P element com...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3824

    authors: Bergman CM,Han S,Nelson MG,Bondarenko V,Kozeretska I

    更新日期:2017-09-15 00:00:00

  • Are invasive populations characterized by a broader diet than native populations?

    abstract:BACKGROUND:Invasive species are among the most significant threats to biodiversity. The diet of invasive animal populations is a crucial factor that must be considered in the context of biological invasions. A broad dietary spectrum is a frequently cited characteristic of invasive species, allowing them to thrive in a ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3250

    authors: Courant J,Vogt S,Marques R,Measey J,Secondi J,Rebelo R,De Villiers A,Ihlow F,De Busschere C,Backeljau T,Rödder D,Herrel A

    更新日期:2017-05-16 00:00:00

  • Gonadal transcriptome sequencing of the critically endangered Acipenser dabryanus to discover candidate sex-related genes.

    abstract:Background:Acipenser dabryanus, an endemic Chinese species, has been listed as a first-class protected animal in China. Sturgeons are among the oldest and most primitive group of existing fish in the world and occupy a special place in the evolutionary history of fish. Thus, a study of the reproduction and sex differen...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5389

    authors: Chen Y,Liu Y,Gong Q,Lai J,Song M,Du J,Deng X

    更新日期:2018-07-27 00:00:00

  • Maxent-directed field surveys identify new populations of narrowly endemic habitat specialists.

    abstract:BACKGROUND:Rare or narrowly endemic organisms are difficult to monitor and conserve when their total distribution and habitat preferences are incompletely known. One method employed in determining distributions of these organisms is species distribution modeling (SDM). METHODS:Using two species of narrowly endemic bur...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3632

    authors: Rhoden CM,Peterman WE,Taylor CA

    更新日期:2017-07-31 00:00:00

  • Physiological responses of Oxyrrhis marina to a diet of virally infected Emiliania huxleyi.

    abstract::The coccolithophore Emiliania huxleyi forms some of the largest phytoplankton blooms in the ocean. The rapid demise of these blooms has been linked to viral infections. E. huxleyi abundance, distribution, and nutritional status make them an important food source for the heterotrophic protists which are classified as m...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6722

    authors: Goode AG,Fields DM,Archer SD,Martínez Martínez J

    更新日期:2019-04-19 00:00:00

  • Long-term administration of vitamin B12 and adenosine triphosphate for idiopathic sudden sensorineural hearing loss: a retrospective study.

    abstract:Background:In idiopathic sudden sensorineural hearing loss (ISSNHL), the relationship between the administration duration of vitamin B12 (vit B12) with adenosine triphosphate (ATP) and their therapeutic effect is not fully understood. Objective:To investigate the therapeutic effect of long-term 16 (≥weeks) administrat...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10406

    authors: Kurioka T,Sano H,Furuki S,Yamashita T

    更新日期:2020-12-16 00:00:00

  • In-silico prediction and modeling of the Entamoeba histolytica proteins: Serine-rich Entamoeba histolytica protein and 29 kDa Cysteine-rich protease.

    abstract:BACKGROUND:Amoebiasis is the third most common parasitic cause of morbidity and mortality, particularly in countries with poor hygienic settings. There exists an ambiguity in the diagnosis of amoebiasis, and hence there arises a necessity for a better diagnostic approach. Serine-rich Entamoeba histolyticaprotein (SREHP...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3160

    authors: Manochitra K,Parija SC

    更新日期:2017-06-28 00:00:00

  • Fishing for vaccines against Vibrio cholerae using in silico pan-proteomic reverse vaccinology approach.

    abstract:Background:Cholera, an acute enteric infection, is a serious health challenge in both the underdeveloped and the developing world. It is caused by Vibrio cholerae after ingestion of fecal contaminated food or water. Cholera outbreaks have recently been observed in regions facing natural calamities (i.e., earthquake in ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6223

    authors: Rashid MI,Rehman S,Ali A,Andleeb S

    更新日期:2019-06-19 00:00:00

  • Microbial communities mediating algal detritus turnover under anaerobic conditions.

    abstract:BACKGROUND:Algae encompass a wide array of photosynthetic organisms that are ubiquitously distributed in aquatic and terrestrial habitats. Algal species often bloom in aquatic ecosystems, providing a significant autochthonous carbon input to the deeper anoxic layers in stratified water bodies. In addition, various alga...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2803

    authors: Morrison JM,Murphy CL,Baker K,Zamor RM,Nikolai SJ,Wilder S,Elshahed MS,Youssef NH

    更新日期:2017-01-10 00:00:00

  • On the diversity of the SE Indo-Pacific species of Terebellides (Annelida; Trichobranchidae), with the description of a new species.

    abstract::The study of material collected during routine monitoring surveys dealing with oil extraction and aquaculture in waters off Myanmar (North Andaman Sea) and in the Gulf of Thailand, respectively, allowed us to analyse the taxonomy and diversity of the polychaete genus Terebellides (Annelida). Three species were found, ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2313

    authors: Parapar J,Moreira J,Martin D

    更新日期:2016-08-16 00:00:00

  • Correction: Asymmetries in mother-infant behaviour in Barbary macaques (Macaca sylvanus).

    abstract::[This corrects the article DOI: 10.7717/peerj.4736.]. ...

    journal_title:PeerJ

    pub_type: 杂志文章,已发布勘误

    doi:10.7717/peerj.4736/correction-1

    authors: Regaiolli B,Spiezio C,Hopkins WD

    更新日期:2018-08-23 00:00:00

  • Back to beaked: Zea mays subsp. mays Rostrata Group in northern Italy, refugia and revival of open-pollinated maize landraces in an intensive cropping system.

    abstract::Crop landraces are fundamental resources to increase the eroded genepool of modern crops in order to adapt agriculture to future challenges; plus, they are of immeasurable heritage and cultural value. Between the 1940s and the 1960s open-pollinated varieties (OPVs) of flint and semi-flint maize in Europe were almost c...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5123

    authors: Ardenghi NMG,Rossi G,Guzzon F

    更新日期:2018-07-04 00:00:00

  • Life as a bachelor: quantifying the success of an alternative reproductive tactic in male blue monkeys.

    abstract::In species that live in one-male groups, resident males monopolize access to a group of females and are assumed to have higher reproductive success than bachelors. We tested this assumption using genetic, demographic, and behavioral data from 8 groups of wild blue monkeys observed over 10 years to quantify reproductio...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1043

    authors: Roberts SJ,Cords M

    更新日期:2015-06-23 00:00:00

  • Comprehensive analyses of genomes, transcriptomes and metabolites of neem tree.

    abstract::Neem (Azadirachta indica A. Juss) is one of the most versatile tropical evergreen tree species known in India since the Vedic period (1500 BC-600 BC). Neem tree is a rich source of limonoids, having a wide spectrum of activity against insect pests and microbial pathogens. Complex tetranortriterpenoids such as azadirac...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1066

    authors: Kuravadi NA,Yenagi V,Rangiah K,Mahesh HB,Rajamani A,Shirke MD,Russiachand H,Loganathan RM,Shankara Lingu C,Siddappa S,Ramamurthy A,Sathyanarayana BN,Gowda M

    更新日期:2015-08-06 00:00:00

  • Identification of limiting climatic and geographical variables for the distribution of the tortoise Chelonoidis chilensis (Testudinidae): a baseline for conservation actions.

    abstract::Background. Just as for most other tortoise species, the once common Chaco tortoise, Chelonoidis chilensis (Testudinidae), is under constant threat across it distribution in Argentina, Bolivia and Paraguay. Despite initial qualitative description of the species distribution and further individual reports of new locati...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1298

    authors: Ruete A,Leynaud GC

    更新日期:2015-10-01 00:00:00

  • Feeding behaviour in a 'basal' tortoise provides insights on the transitional feeding mode at the dawn of modern land turtle evolution.

    abstract::Almost all extant testudinids are highly associated with terrestrial habitats and the few tortoises with high affinity to aquatic environments are found within the genus Manouria. Manouria belongs to a clade which forms a sister taxon to all remaining tortoises and is suitable as a model for studying evolutionary tran...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1172

    authors: Natchev N,Tzankov N,Werneburg I,Heiss E

    更新日期:2015-08-11 00:00:00

  • Proceraea exoryxae sp. nov. (Annelida, Syllidae, Autolytinae), the first known polychaete miner tunneling into the tunic of an ascidian.

    abstract::While studying organisms living in association with the solitary tunicate Phallusia nigra (Ascidiacea, Ascidiidae) from a shallow fringing reef at Zeytouna Beach (Egyptian Red Sea), one of the collected ascidians showed peculiar perforations on its tunic. Once dissected, the perforations revealed to be the openings of...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3374

    authors: Martin D,Nygren A,Cruz-Rivera E

    更新日期:2017-06-01 00:00:00

  • A detailed observation of the ejection and retraction of defense tissue acontia in sea anemone (Exaiptasia pallida).

    abstract::Acontia, located in the gastrovascular cavity of anemone, are thread-like tissue containing numerous stinging cells which serve as a unique defense tissue against predators of the immobile acontiarian sea anemone. Although its morphology and biological functions, such as defense and digestion, have been studied, the d...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2996

    authors: Lam J,Cheng YW,Chen WU,Li HH,Chen CS,Peng SE

    更新日期:2017-02-21 00:00:00

  • Artificial neural network cascade identifies multi-P450 inhibitors in natural compounds.

    abstract::Substantial evidence has shown that most exogenous substances are metabolized by multiple cytochrome P450 (P450) enzymes instead of by merely one P450 isoform. Thus, multi-P450 inhibition leads to greater drug-drug interaction risk than specific P450 inhibition. Herein, we innovatively established an artificial neural...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1524

    authors: Li Z,Li Y,Sun L,Tang Y,Liu L,Zhu W

    更新日期:2015-12-21 00:00:00

  • Spatial structure arising from neighbour-dependent bias in collective cell movement.

    abstract::Mathematical models of collective cell movement often neglect the effects of spatial structure, such as clustering, on the population dynamics. Typically, they assume that individuals interact with one another in proportion to their average density (the mean-field assumption) which means that cell-cell interactions oc...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1689

    authors: Binny RN,Haridas P,James A,Law R,Simpson MJ,Plank MJ

    更新日期:2016-02-15 00:00:00

  • Epidemiological dynamics of an urban Dengue 4 outbreak in São Paulo, Brazil.

    abstract:BACKGROUND:Dengue studies at the urban scale are scarce and required for guiding control efforts. In Brazil, the burden of dengue is high and challenges city public health administrations with limited resources. Here we studied the dynamics of a dengue epidemic in a single city. METHODS:Serum samples from dengue suspe...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1892

    authors: Villabona-Arenas CJ,de Oliveira JL,de Sousa-Capra C,Balarini K,Pereira da Fonseca CR,Zanotto PM

    更新日期:2016-04-05 00:00:00

  • The nectar report: quantitative review of nectar sugar concentrations offered by bee visited flowers in agricultural and non-agricultural landscapes.

    abstract::There is growing concern that some bee populations are in decline, potentially threatening pollination security in agricultural and non-agricultural landscapes. Among the numerous causes associated with this trend, nutritional stress resulting from a mismatch between bee nutritional needs and plant community provision...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6329

    authors: Pamminger T,Becker R,Himmelreich S,Schneider CW,Bergtold M

    更新日期:2019-02-27 00:00:00