Global mapping of potential natural vegetation: an assessment of machine learning algorithms for estimating land potential.

Abstract:

:Potential natural vegetation (PNV) is the vegetation cover in equilibrium with climate, that would exist at a given location if not impacted by human activities. PNV is useful for raising public awareness about land degradation and for estimating land potential. This paper presents results of assessing machine learning algorithms-neural networks (nnet package), random forest (ranger), gradient boosting (gbm), K-nearest neighborhood (class) and Cubist-for operational mapping of PNV. Three case studies were considered: (1) global distribution of biomes based on the BIOME 6000 data set (8,057 modern pollen-based site reconstructions), (2) distribution of forest tree taxa in Europe based on detailed occurrence records (1,546,435 ground observations), and (3) global monthly fraction of absorbed photosynthetically active radiation (FAPAR) values (30,301 randomly-sampled points). A stack of 160 global maps representing biophysical conditions over land, including atmospheric, climatic, relief, and lithologic variables, were used as explanatory variables. The overall results indicate that random forest gives the overall best performance. The highest accuracy for predicting BIOME 6000 classes (20) was estimated to be between 33% (with spatial cross-validation) and 68% (simple random sub-setting), with the most important predictors being total annual precipitation, monthly temperatures, and bioclimatic layers. Predicting forest tree species (73) resulted in mapping accuracy of 25%, with the most important predictors being monthly cloud fraction, mean annual and monthly temperatures, and elevation. Regression models for FAPAR (monthly images) gave an R-square of 90% with the most important predictors being total annual precipitation, monthly cloud fraction, CHELSA bioclimatic layers, and month of the year, respectively. Further developments of PNV mapping could include using all GBIF records to map the global distribution of plant species at different taxonomic levels. This methodology could also be extended to dynamic modeling of PNV, so that future climate scenarios can be incorporated. Global maps of biomes, FAPAR and tree species at one km spatial resolution are available for download via http://dx.doi.org/10.7910/DVN/QQHCIK.

journal_name

PeerJ

journal_title

PeerJ

authors

Hengl T,Walsh MG,Sanderman J,Wheeler I,Harrison SP,Prentice IC

doi

10.7717/peerj.5457

subject

Has Abstract

pub_date

2018-08-22 00:00:00

pages

e5457

issn

2167-8359

pii

5457

journal_volume

6

pub_type

杂志文章

相关文献

PeerJ文献大全
  • Survivorship and feeding preferences among size classes of outplanted sea urchins, Tripneustes gratilla, and possible use as biocontrol for invasive alien algae.

    abstract::We investigate the survivorship, growth and diet preferences of hatchery-raised juvenile urchins, Tripneustes gratilla, to evaluate the efficacy of their use as biocontrol agents in the efforts to reduce alien invasive algae. In flow-through tanks, we measured urchin growth rates, feeding rates and feeding preferences...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1235

    authors: Westbrook CE,Ringang RR,Cantero SM,HDAR & TNC Urchin Team.,Toonen RJ

    更新日期:2015-09-15 00:00:00

  • Contributions of Latin American researchers in the understanding of the novel coronavirus outbreak: a literature review.

    abstract::This article aimed to give the visibility of Latin American researchers' contributions to the comprehension of COVID-19; our method was a literature review. Currently, the world is facing a health and socioeconomic crisis caused by the novel coronavirus, SARS-CoV-2, and its disease COVID-19. Therefore, in less than 4 ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9332

    authors: Fiesco-Sepúlveda KY,Serrano-Bermúdez LM

    更新日期:2020-06-04 00:00:00

  • Unfolding of α-helical 20-residue poly-glutamic acid analyzed by multiple runs of canonical molecular dynamics simulations.

    abstract::Elucidating the molecular mechanism of helix-coil transitions of short peptides is a long-standing conundrum in physical chemistry. Although the helix-coil transitions of poly-glutamic acid (PGA) have been extensively studied, the molecular details of its unfolding process still remain unclear. We performed all-atom c...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4769

    authors: Ogasawara N,Kasahara K,Iwai R,Takahashi T

    更新日期:2018-05-15 00:00:00

  • Herbicide injury induces DNA methylome alterations in Arabidopsis.

    abstract::The emergence of herbicide-resistant weeds is a major threat facing modern agriculture. Over 470 weedy-plant populations have developed resistance to herbicides. Traditional evolutionary mechanisms are not always sufficient to explain the rapidity with which certain weed populations adapt in response to herbicide expo...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3560

    authors: Kim G,Clarke CR,Larose H,Tran HT,Haak DC,Zhang L,Askew S,Barney J,Westwood JH

    更新日期:2017-07-20 00:00:00

  • Bioinformatic pipelines for whole transcriptome sequencing data exploitation in leukemia patients with complex structural variants.

    abstract:Background:Extensive genome rearrangements, known as chromothripsis, have been recently identified in several cancer types. Chromothripsis leads to complex structural variants (cSVs) causing aberrant gene expression and the formation of de novo fusion genes, which can trigger cancer development, or worsen its clinical ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7071

    authors: Hynst J,Plevova K,Radova L,Bystry V,Pal K,Pospisilova S

    更新日期:2019-06-12 00:00:00

  • Population connectivity and larval dispersal of the exploited mangrove crab Ucides cordatus along the Brazilian coast.

    abstract:Background:The mangrove crab Ucides cordatus is considered a key species for the ecological balance of mangrove forests and a major source of employment and income for traditional crab collectors in Brazil. Several studies evidenced weak genetic variation among populations due to an efficient larval transport. However,...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4702

    authors: Britto FB,Schmidt AJ,Carvalho AMF,Vasconcelos CCMP,Farias AM,Bentzen P,Diniz FM

    更新日期:2018-04-30 00:00:00

  • VSEARCH: a versatile open source tool for metagenomics.

    abstract:BACKGROUND:VSEARCH is an open source and free of charge multithreaded 64-bit tool for processing and preparing metagenomics, genomics and population genomics nucleotide sequence data. It is designed as an alternative to the widely used USEARCH tool (Edgar, 2010) for which the source code is not publicly available, algo...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2584

    authors: Rognes T,Flouri T,Nichols B,Quince C,Mahé F

    更新日期:2016-10-18 00:00:00

  • Sampling designs matching species biology produce accurate and affordable abundance indices.

    abstract::Wildlife biologists often use grid-based designs to sample animals and generate abundance estimates. Although sampling in grids is theoretically sound, in application, the method can be logistically difficult and expensive when sampling elusive species inhabiting extensive areas. These factors make it challenging to s...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.227

    authors: Harris G,Farley S,Russell GJ,Butler MJ,Selinger J

    更新日期:2013-12-17 00:00:00

  • C9orf72, a protein associated with amyotrophic lateral sclerosis (ALS) is a guanine nucleotide exchange factor.

    abstract::Amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD), two late onset neurodegenerative diseases, have been shown to share overlapping cellular pathologies and genetic origins. Studies suggest that a hexanucleotide repeat expansion in the first intron of the C9orf72 gene is the most common cause of fam...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5815

    authors: Iyer S,Subramanian V,Acharya KR

    更新日期:2018-10-17 00:00:00

  • Effectiveness of winter temperatures for satisfying chilling requirements for reproductive budburst of red alder (Alnus rubra).

    abstract:Background:Experiencing an adequate amount of cold temperatures over winter is necessary for many temperate tree species to break dormancy and flower in spring. Thus, changes in winter and spring temperatures associated with climate change may influence when trees break dormancy and flower in the future. There have bee...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5221

    authors: Prevéy JS,Harrington CA

    更新日期:2018-09-25 00:00:00

  • A phylogenetic taxonomy of the Cyrtodactylus peguensis group (Reptilia: Squamata: Gekkonidae) with descriptions of two new species from Myanmar.

    abstract::A phylogenetic taxonomy of species in the Cyrtodactylus peguensis group from the Ayeyarwady Basin of Myanmar is constructed based on color pattern, morphology, and molecular systematic analyses using the mitochondrial gene NADH dehydrogenase subunit 2. Newly collected samples from the type locality of C. peguensis and...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5575

    authors: Grismer LL,Wood PL Jr,Quah ESH,Murdoch ML,Grismer MS,Herr MW,Espinoza RE,Brown RM,Lin A

    更新日期:2018-09-19 00:00:00

  • Keraphyton gen. nov., a new Late Devonian fern-like plant from Australia.

    abstract::The first plants related to the ferns are represented by several extinct groups that emerged during the Devonian. Among them, the iridopterids are closely allied to the sphenopsids, a group represented today by the genus Equisetum. They have been documented in Middle to early Late Devonian deposits of Laurussia and th...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9321

    authors: Champreux A,Meyer-Berthaud B,Decombeix AL

    更新日期:2020-06-16 00:00:00

  • Physical activity and pre-diabetes-an unacknowledged mid-life crisis: findings from NHANES 2003-2006.

    abstract::The prevalence of pre-diabetes (PD) among US adults has increased substantially over the past two decades. By current estimates, over 34% of US adults fall in the PD category, 84% of whom meet the American Diabetes Association's criteria for impaired fasting glucose (IFG). Low physical activity (PA) and/or sedentary b...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.499

    authors: Farni K,Shoham DA,Cao G,Luke AH,Layden J,Cooper RS,Dugas LR

    更新日期:2014-08-19 00:00:00

  • Influences of heel height on human postural stability and functional mobility between inexperienced and experienced high heel shoe wearers.

    abstract:Background:High heel shoes (HHS) can affect human postural control because elevated heel height (HH) may result in plantar flexed foot and limit ankle joint range of motion during walking. Effects of HH and HHS wearing experience on postural stability during self-initiated and externally triggered perturbations are les...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10239

    authors: Chen Y,Li JX,Wang L

    更新日期:2020-10-28 00:00:00

  • Parental encouragement is positively associated with outdoor active play outside of school hours among 7-12 year olds.

    abstract::Background. Physical activity is important for children's physical, mental, and social well-being. Outdoor active play is an important yet unstudied domain of children's physical activity. The objective of this study was to determine if parental encouragement is associated with the frequency that children engage in ou...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1463

    authors: Ferrao T,Janssen I

    更新日期:2015-11-30 00:00:00

  • Associations of moderate-to-vigorous physical activity with psychological problems and suicidality in Chinese high school students: a cross-sectional study.

    abstract:Background:The body of literature regarding the associations between physical activity and psychological problems lacks consensus. Moreover, the role of gender has been scarcely investigated. The present study sought to fill the gap in the data by examining the associations, if any, between moderate-to-vigorous physica...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8775

    authors: Liu M,Zhang J,Kamper-DeMarco KE,Hu E,Yao S

    更新日期:2020-03-25 00:00:00

  • Effects of graded concentrations of supplemental lead on lead concentrations in tissues of pigs and prediction equations for estimating dietary lead intake.

    abstract::The objectives of this experiment were to determine the effects of graded dietary lead (Pb) concentrations on body weight and Pb concentrations in blood, hair, soft tissues, and urine from pigs and to generate equations for estimating daily Pb intake. Sixteen barrows with initial body weight 36.3 kg (standard deviatio...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3936

    authors: Reddy KE,Park KR,Lee SD,Yoo JH,Son AR,Lee HJ

    更新日期:2017-11-01 00:00:00

  • Optimizing the use of a sensor resource for opponent polarization coding.

    abstract::Flies use specialized photoreceptors R7 and R8 in the dorsal rim area (DRA) to detect skylight polarization. R7 and R8 form a tiered waveguide (central rhabdomere pair, CRP) with R7 on top, filtering light delivered to R8. We examine how the division of a given resource, CRP length, between R7 and R8 affects their abi...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2772

    authors: Heras FJ,Laughlin SB

    更新日期:2017-01-12 00:00:00

  • Comparison of polybrominated diphenyl ethers (PBDEs) and polychlorinated biphenyls (PCBs) in the serum of hypothyroxinemic and euthyroid dogs.

    abstract:OBJECTIVE:To determine the profile of 14 polybrominated diphenyl ethers (PBDEs) and 23 polychlorinated biphenyls (PCBs) in serum of domestic canines and whether this was predictive of thyroid hormone status. SAMPLES:Serum samples were collected from 51 client-owned dogs visiting the University of California Davis Will...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3780

    authors: Lau G,Walter K,Kass P,Puschner B

    更新日期:2017-09-12 00:00:00

  • Nutritional assessment, phytochemical composition and antioxidant analysis of the pulp and seed of medjool date grown in Mexico.

    abstract::The aim of this study was the characterization of fatty acids, antioxidant activity, some physical properties, nutrient content, sugars, and minerals in the pulp and seeds of the date cultivar 'Medjool' (Phoenix dactylifera L.) grown in Mexico. The samples were obtained at maturity (Tamar) in the 2017 harvest season i...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6821

    authors: Salomón-Torres R,Ortiz-Uribe N,Valdez-Salas B,Rosas-González N,García-González C,Chávez D,Córdova-Guerrero I,Díaz-Rubio L,Haro-Vázquez MDP,Mijangos-Montiel JL,Morales-Maza A,Mahadevan P,Krueger R

    更新日期:2019-07-17 00:00:00

  • Tweet success? Scientific communication correlates with increased citations in Ecology and Conservation.

    abstract::Science communication is seen as critical for the disciplines of ecology and conservation, where research products are often used to shape policy and decision making. Scientists are increasing their online media communication, via social media and news. Such media engagement has been thought to influence or predict tr...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4564

    authors: Lamb CT,Gilbert SL,Ford AT

    更新日期:2018-04-12 00:00:00

  • The effect of pharmacological inhibition of Serine Proteases on neuronal networks in vitro.

    abstract::Neurons are embedded in an extracellular matrix (ECM), which functions both as a scaffold and as a regulator of neuronal function. The ECM is in turn dynamically altered through the action of serine proteases, which break down its constituents. This pathway has been implicated in the regulation of synaptic plasticity ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6796

    authors: Van De Vijver S,Missault S,Van Soom J,Van Der Veken P,Augustyns K,Joossens J,Dedeurwaerdere S,Giugliano M

    更新日期:2019-04-23 00:00:00

  • Mismatches between the genetic and phenotypic sex in the wild Kou population of Nile tilapia Oreochromis niloticus.

    abstract::Sex determination and sex chromosomes can be very diverse between teleost species. The group of tilapias shows a polymorphism in sex determination not only between closely related species but also between domestic strains within a species. In the Nile tilapia, the major effect genes and therefore the Y chromosome have...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7709

    authors: Sissao R,D'Cotta H,Baroiller JF,Toguyeni A

    更新日期:2019-09-18 00:00:00

  • Diminishing returns as a function of disturbance.

    abstract::According to Spearman's law of diminishing returns (SLODR), IQ test scores are more g saturated among those with low, compared to those with high, ability. The present simulation shows that such difference in saturation can be observed if test scores are affected by a disturbing factor, for example, low motivation, il...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9490

    authors: Sorjonen K,Melin B

    更新日期:2020-07-03 00:00:00

  • Utility of a time frame in assessing psychological pain and suicide ideation.

    abstract:BACKGROUND:Assessing psychological pain has been recommended as an integral part of a comprehensive suicide risk assessment. The Psychache Scale, an established measure of psychological pain, does not specify a time frame for when pain is experienced, which may inadvertently increase the likelihood of identifying indiv...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3491

    authors: Meerwijk EL,Weiss SJ

    更新日期:2017-06-22 00:00:00

  • A new iguanodontian (Dinosauria: Ornithopoda) from the Early Cretaceous of Mongolia.

    abstract::We describe a new iguanodontian ornithopod, Choyrodon barsboldi gen. et sp. nov. from the Albian-aged Khuren Dukh Formation of Mongolia based on several partial skeletons interpreted to represent a subadult growth stage based on osteohistological features. This new taxon is diagnosed by many autapomorphies of the maxi...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5300

    authors: Gates TA,Tsogtbaatar K,Zanno LE,Chinzorig T,Watabe M

    更新日期:2018-08-03 00:00:00

  • Enforced symmetry: the necessity of symmetric waxing and waning.

    abstract::A fundamental question in ecology is how the success of a taxon changes through time and what drives this change. This question is commonly approached using trajectories averaged over a group of taxa. Using results from probability theory, we show analytically and using examples that averaged trajectories will be more...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8011

    authors: Hohmann N,Jarochowska E

    更新日期:2019-11-06 00:00:00

  • miR-27b attenuates apoptosis induced by transmissible gastroenteritis virus (TGEV) infection via targeting runt-related transcription factor 1 (RUNX1).

    abstract::Transmissible gastroenteritis virus (TGEV), belonging to the coronaviridae family, is the key cause of the fatal diarrhea of piglets and results in many pathological processes. microRNAs (miRNAs) play a key role in the regulation of virus-induced apoptosis. During the process of apoptosis induced by TGEV infection in ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1635

    authors: Zhao X,Song X,Bai X,Fei N,Huang Y,Zhao Z,Du Q,Zhang H,Zhang L,Tong D

    更新日期:2016-02-04 00:00:00

  • Nest-site selection, reproductive ecology and shifts within core-use areas of Black-necked Cranes at the northern limit of the Tibetan Plateau.

    abstract::We investigated population dynamics, breeding pairs, breeding habitat selection, nest density, distance between neighboring nests, nest survival, reproductive success, and recruitment rate for Black-necked Cranes (BNC, Grus nigricollis) during 2013-2015 in Yanchiwan National Nature Reserve (YCW), Gansu, China. Numbers...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2939

    authors: Zhang L,An B,Shu M,Yang X

    更新日期:2017-01-31 00:00:00

  • Aerosol optical depth (AOD): spatial and temporal variations and association with meteorological covariates in Taklimakan desert, China.

    abstract::Aerosol optical depth (AOD) is a key parameter that reflects aerosol characteristics. However, research on the AOD of dust aerosols and various environmental variables is scarce. Therefore, we conducted in-depth studies on the distributions and variations of AOD in the Taklimakan Desert and its margins, China. We exam...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10542

    authors: Li J,Ge X,He Q,Abbas A

    更新日期:2021-01-05 00:00:00