VSEARCH: a versatile open source tool for metagenomics.

abstract：Purpose:Yes associated protein 1 (YAP1), which is a standout amongst the most essential effectors of the Hippo pathway, assumes a vital part in a few kinds of cancer. However, whether YAP1 is an oncogene in CRC (colorectal cancer) remains controversial, and the association between the subcellular localization of YAP1 a...

journal_title：PeerJ

authors： Dong T,Yuan Y,Xiang X,Sang S,Shen H,Wang L,Yang C,Li F,Li H,Zheng S

更新日期：2020-11-19 00:00:00

abstract：:The Proboscideans, an order of mammals including elephants, are the largest of the Earth lands animals. One probable consequence of the rapid increase of their body size is the development of the trunk, a multitask highly sensitive organ used in a large repertoire of behaviours. The absence of bones in the trunk allow...

journal_title：PeerJ

authors： Lefeuvre M,Gouat P,Mulot B,Cornette R,Pouydebat E

更新日期：2020-08-18 00:00:00

abstract：:Coastal birds are critical ecosystem constituents on sandy shores, yet are threatened by depressed reproductive success resulting from direct and indirect anthropogenic and natural pressures. Few studies examine clutch fate across the wide range of environments experienced by birds; instead, most focus at the small si...

journal_title：PeerJ

authors： Maslo B,Schlacher TA,Weston MA,Huijbers CM,Anderson C,Gilby BL,Olds AD,Connolly RM,Schoeman DS

更新日期：2016-09-13 00:00:00

abstract：:In this study we analysed the impact of water regime and soil nutrients on the clonal diversity and genetic variation of the sedge Carex nigra in a central alpine fen. For our analysis, we established 16 study plots randomly distributed over the fen. We determined the exact elevation of each plot as an indicator for t...

journal_title：PeerJ

authors： Reisch C,Meier S,Schmid C,Bartelheimer M

更新日期：2020-06-03 00:00:00

abstract：:Burkholderia pseudomallei, the causative agent of melioidosis, is intrinsically resistant to many conventional antibiotics. Therefore, alternative antimicrobial agents such as antimicrobial peptides (AMPs) are extensively studied to combat this issue. Our study aims to identify and understand the mode of action of the...

journal_title：PeerJ

authors： Lee LF,Mariappan V,Vellasamy KM,Lee VS,Vadivelu J

更新日期：2016-10-25 00:00:00

abstract：:Despite being geographically central to the Atlantic Americas Flyway for migratory birds, the Caribbean is often overlooked or underappreciated when addressing the conservation of North American shorebirds. To our knowledge, this is the first Caribbean-wide assessment of shorebird use in the region. We analyzed 211,01...

journal_title：PeerJ

authors： Cañizares JR,Reed JM

更新日期：2020-09-08 00:00:00

abstract：:The family Pseudopimelodidae is widely distributed in South America and includes 51 described species organized in seven genera. Only two of four species of the genus Pseudopimelodus have been recorded for the trans-Andean basins of Colombia, Pseudopimelodus bufonius and P. schultzi, whose similarity in external morph...

journal_title：PeerJ

authors： Restrepo-Gómez AM,Rangel-Medrano JD,Márquez EJ,Ortega-Lara A

更新日期：2020-09-03 00:00:00

abstract：:Dendritic spines are described as neuronal protrusions. The morphology of dendritic spines and dendrites has a strong relationship to its function, as well as playing an important role in understanding brain function. Quantitative analysis of dendrites and dendritic spines is essential to an understanding of the forma...

journal_title：PeerJ

authors： Wang S,Chen M,Li Y,Shao Y,Zhang Y,Du S,Wu J

更新日期：2016-07-20 00:00:00

abstract：:To understand the mechanism of photosynthetic inhibition and generation of reactive oxygen species (ROS) in Symbiodinium types under stress, chemicals such as dichlorophenyl dimethylurea (DCMU) are widely used. Moreover, DCMU and recently menthol were used to generate aposymbiotic cnidarian hosts. While the effects of...

journal_title：PeerJ

authors： Wang JT,Keshavmurthy S,Chu TY,Chen CA

更新日期：2017-10-02 00:00:00

abstract：:We developed a novel method based on the Fourier analysis of protein molecular surfaces to speed up the analysis of the vast structural data generated in the post-genomic era. This method computes the power spectrum of surfaces of the molecular electrostatic potential, whose three-dimensional coordinates have been eit...

journal_title：PeerJ

authors： Carvalho CS,Vlachakis D,Tsiliki G,Megalooikonomou V,Kossida S

更新日期：2013-10-22 00:00:00

abstract：:The antimicrobial additive triclosan has been used in personal care products widely across the globe for decades. Triclosan resistance has been noted among Vibrio spp., but reports have been anecdotal and the extent of phenotypic triclosan resistance across the Vibrionaceae family has not been established. Here, tricl...

journal_title：PeerJ

authors： Lydon KA,Robertson MJ,Lipp EK

更新日期：2018-07-12 00:00:00

abstract：:In a number of recent studies we used computer modeling to investigate the evolution of muscle leverage (moment arms) and function in extant and extinct archosaur lineages (crocodilians, dinosaurs including birds and pterosaurs). These studies sought to quantify the level of disparity and convergence in muscle moment ...

journal_title：PeerJ

authors： Bates K,Maidment SC,Schachner ER,Barrett PM

更新日期：2015-10-08 00:00:00

abstract：:The epidemic of mass mortality of oak trees by Japanese oak wilt has affected secondary deciduous broadleaved forests that have been used as coppices in Japan. The dieback of oak trees formed gaps in the crown that would be expected to enhance the regeneration of shade-intolerant pioneer species. However, foraging by ...

journal_title：PeerJ

authors： Itô H

更新日期：2016-12-22 00:00:00

abstract：:The origin of recent parallel outbreaks of the high pathogenicity H5N8 avian flu virus in Europe and in Japan can be traced to a single source population, which has most likely been spread by migratory birds. By using Bayesian coalescent methods to analyze the DNA sequences of the virus to find the times for divergenc...

journal_title：PeerJ

authors： Dalby AR,Iqbal M

更新日期：2015-04-30 00:00:00

abstract：:We study the glycosylation processes that convert initially toxic substrates to nutritionally valuable metabolites in the flavonoid biosynthesis pathway of tomato (Solanum lycopersicum) seedlings. To estimate the reaction rates we use ordinary differential equations (ODEs) to model the enzyme kinetics. A popular choic...

journal_title：PeerJ

authors： Astola L,Stigter H,Gomez Roldan MV,van Eeuwijk F,Hall RD,Groenenboom M,Molenaar JJ

更新日期：2016-09-20 00:00:00

abstract：:Secondary cavity nesting (SCN) birds breed in holes that they do not excavate themselves. This is possible where there are large trees whose size and age permit the digging of holes by primary excavators and only rarely happens in forest plantations, where we expected a deficit of both breeding holes and SCN species. ...

journal_title：PeerJ

authors： Cuatianquiz Lima C,Macías Garcia C

更新日期：2016-03-15 00:00:00

abstract：:Construction of hydropower stations has been an important approach to meet China's increasing power demand, but the impact of construction of hydropower stations on river microbiota is not fully understood. To evaluate this, the microbial composition from 18 sampling sites in the downstream of Jinsha River of China, u...

journal_title：PeerJ

authors： Chen X,He D,Zhou L,Cao Y,Li Z

更新日期：2020-07-16 00:00:00

abstract：Background:Conserving both biodiversity and ecosystem services is a major goal of the Convention on Biological Diversity. Hotspots for biodiversity in the Andes significantly overlap with areas with dense human populations that sustain their economy through agricultural production. Therefore, developing management form...

journal_title：PeerJ

authors： Quintana C,Girardello M,Balslev H

更新日期：2019-02-13 00:00:00

abstract：Background:This study was performed to determine the characteristics of community cats that were admitted to trap-neuter-return(TNR) programs and the feasibility of the high-quality, high-volume spay/neuter (HQHVSN) model in Seoul, Korea. Methods:TNR programs were performed eight times from 2017 to 2018, and a total o...

journal_title：PeerJ

authors： Cho Y,Kim K,Kim MS,Lee I

更新日期：2020-03-05 00:00:00

abstract：BACKGROUND:Aspergillus niger, along with many other lignocellulolytic fungi, has been widely used as a commercial workhorse for cellulase production. A fungal cellulase system generally includes three major classes of enzymes i.e., β-glucosidases, endoglucanases and cellobiohydrolases. Cellobiohydrolases (CBH) are vita...

journal_title：PeerJ

authors： Woon JS,Mackeen MM,Illias RM,Mahadi NM,Broughton WJ,Murad AMA,Abu Bakar FD

更新日期：2017-10-12 00:00:00

abstract：Background:The microRNAs (miRNAs) have been validated as prognostic markers in many cancers. Here, we aimed at developing a miRNA-based signature for predicting the prognosis of esophagus adenocarcinoma (EAC). Methods:The RNA-sequencing data set of EAC was downloaded from The Cancer Genome Atlas (TCGA). Eighty-four pa...

journal_title：PeerJ

authors： Lan T,Lu Y,Xiao Z,Xu H,He J,Hu Z,Mao W

更新日期：2019-07-25 00:00:00

abstract：:The currently-accepted dogma when analysing human Alu transposable elements is that 'young' Alu elements are found in low GC regions and 'old' Alus in high GC regions. The correlation between high GC regions and high gene frequency regions make this observation particularly difficult to explain. Although a number of s...

journal_title：PeerJ

authors： Hellen EH,Brookfield JF

更新日期：2013-05-21 00:00:00

abstract：Background:Yunnanolepidoids constitute either the most basal consecutive segments or the most primitive clade of antiarchs, a highly diversified jawed vertebrate group from the Silurian and Early Devonian periods. Although the general morphology of yunnanolepidoids is well established, their endocranial features remain...

journal_title：PeerJ

authors： Wang Y,Zhu M

更新日期：2018-05-28 00:00:00

abstract：Background:Magnetite-mediated direct interspecies electron transfer (DIET) between Geobacter and Methanosarcina species is increasingly being invoked to explain magnetite stimulation of methane production in anaerobic soils and sediments. Although magnetite-mediated DIET has been documented in defined co-cultures reduc...

journal_title：PeerJ

authors： Wang O,Zheng S,Wang B,Wang W,Liu F

更新日期：2018-03-21 00:00:00

abstract：:Zoigê Plateau, China's largest plateau marsh wetland, has experienced large-scale degradation of the marsh wetland and evolution of the wetland landscape pattern over the past 40 years due to climate warming and human activities. How exactly do the wetland landscape pattern characteristics change? How do climatic chan...

journal_title：PeerJ

authors： Dong L,Yang W,Zhang K,Zhen S,Cheng X,Wu L

更新日期：2020-09-29 00:00:00

abstract：Background:Health education can benefit people with chronic diseases. However, in previous research those benefits were small, and reinforcement to maintain them was not effective. A possible explanation is that the benefits appeared to be small and reinforcement appeared to be ineffective because those analyses mixed ...

journal_title：PeerJ

authors： Park MJ,Green J,Jung HS,Park YS

更新日期：2019-07-15 00:00:00

abstract：:The evolution of the modern human (Homo sapiens) cranium is characterized by a reduction in the size of the feeding system, including reductions in the size of the facial skeleton, postcanine teeth, and the muscles involved in biting and chewing. The conventional view hypothesizes that gracilization of the human feedi...

journal_title：PeerJ

authors： Ledogar JA,Dechow PC,Wang Q,Gharpure PH,Gordon AD,Baab KL,Smith AL,Weber GW,Grosse IR,Ross CF,Richmond BG,Wright BW,Byron C,Wroe S,Strait DS

更新日期：2016-07-26 00:00:00

abstract：:Background. Hand function is essential to a person's self-efficacy and greatly affects quality of life. Adapted utensils with handles of increased diameters have historically been used to assist individuals with arthritis or other hand disabilities for feeding, and other related activities of daily living. To date, mi...

journal_title：PeerJ

authors： McDonald SS,Levine D,Richards J,Aguilar L

更新日期：2016-02-15 00:00:00

abstract：Background:Leucojum aestivum L. is an important medicinal plant which produces Amaryllidaceae alkaloids, especially galanthamine and lycorine. Research is currently exploring the possibility of producing these alkaloids using biotechnological methods, including in vitro cultures. The biosynthesis of alkaloids may be af...

journal_title：PeerJ

authors： Ptak A,Morańska E,Skrzypek E,Warchoł M,Spina R,Laurain-Mattar D,Simlat M

更新日期：2020-03-16 00:00:00

abstract：Background:Plums are a kind of stone fruit, a category that includes peaches, cherries, apricots, and almonds. In Korea, Japanese plum trees are usually cultivated as they best suit the climate. To date, there have been few studies in Korea on viruses infecting plum trees compared to those infecting peach trees. Metho...

journal_title：PeerJ

authors： Jo Y,Choi H,Lian S,Cho JK,Chu H,Cho WK

更新日期：2020-07-29 00:00:00