Comparative microRNA-seq Analysis Depicts Candidate miRNAs Involved in Skin Color Differentiation in Red Tilapia.

Abstract:

:Differentiation and variation in body color has been a growing limitation to the commercial value of red tilapia. Limited microRNA (miRNA) information is available on skin color differentiation and variation in fish so far. In this study, a high-throughput Illumina sequencing of sRNAs was conducted on three color varieties of red tilapia and 81,394,491 raw reads were generated. A total of 158 differentially expressed miRNAs (|log₂(fold change)| ≥ 1 and q-value ≤ 0.001) were identified. Target prediction and functional analysis of color-related miRNAs showed that a variety of putative target genes—including slc7a11, mc1r and asip—played potential roles in pigmentation. Moreover; the miRNA-mRNA regulatory network was illustrated to elucidate the pigmentation differentiation, in which miR-138-5p and miR-722 were predicted to play important roles in regulating the pigmentation process. These results advance our understanding of the molecular mechanisms of skin pigmentation differentiation in red tilapia.

journal_name

Int J Mol Sci

authors

Wang L,Zhu W,Dong Z,Song F,Dong J,Fu J

doi

10.3390/ijms19041209

subject

Has Abstract

pub_date

2018-04-16 00:00:00

issue

4

issn

1422-0067

pii

ijms19041209

journal_volume

19

pub_type

杂志文章
  • The Role of NLRP3 Inflammasome in the Pathogenesis of Traumatic Brain Injury.

    abstract::Traumatic brain injury (TBI) represents an important problem of global health. The damage related to TBI is first due to the direct injury and then to a secondary phase in which neuroinflammation plays a key role. NLRP3 inflammasome is a component of the innate immune response and different diseases, such as neurodege...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21176204

    authors: Irrera N,Russo M,Pallio G,Bitto A,Mannino F,Minutoli L,Altavilla D,Squadrito F

    更新日期:2020-08-27 00:00:00

  • Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.

    abstract::Overexpression of a constitutively active truncated form of OsCDPK1 (OEtr) in rice produced smaller seeds, but a double-stranded RNA gene-silenced form of OsCDPK1 (Ri) yielded larger seeds, suggesting that OsCDPK1 plays a functional role in rice seed development. In the study presented here, we propose a model in whic...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19103247

    authors: Jiang JZ,Kuo CH,Chen BH,Chen MK,Lin CS,Ho SL

    更新日期:2018-10-19 00:00:00

  • Suppression of Ocular Vascular Inflammation through Peptide-Mediated Activation of Angiopoietin-Tie2 Signaling.

    abstract::Persistent inflammation is a complication associated with many ocular diseases. Changes in ocular vessels can amplify disease responses and contribute to vision loss by influencing the delivery of leukocytes to the eye, vascular leakage, and perfusion. Here, we report the anti-inflammatory activity for AXT107, a non-R...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21145142

    authors: Mirando AC,Lima E Silva R,Chu Z,Campochiaro PA,Pandey NB,Popel AS

    更新日期:2020-07-21 00:00:00

  • Rat Aquaporin-5 Is pH-Gated Induced by Phosphorylation and Is Implicated in Oxidative Stress.

    abstract::Aquaporin-5 (AQP5) is a membrane water channel widely distributed in human tissues that was found up-regulated in different tumors and considered implicated in carcinogenesis in different organs and systems. Despite its wide distribution pattern and physiological importance, AQP5 short-term regulation was not reported...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17122090

    authors: Rodrigues C,Mósca AF,Martins AP,Nobre T,Prista C,Antunes F,Cipak Gasparovic A,Soveral G

    更新日期:2016-12-13 00:00:00

  • Increased Serum Levels of Fetal Tenascin-C Variants in Patients with Pulmonary Hypertension: Novel Biomarkers Reflecting Vascular Remodeling and Right Ventricular Dysfunction?

    abstract::Pulmonary vascular remodeling is a pathophysiological feature that common to all classes of pulmonary hypertension (PH) and right ventricular dysfunction, which is the major prognosis-limiting factor. Vascular, as well as cardiac tissue remodeling are associated with a re-expression of fetal variants of cellular adhes...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18112371

    authors: Rohm I,Grün K,Müller LM,Kretzschmar D,Fritzenwanger M,Yilmaz A,Lauten A,Jung C,Schulze PC,Berndt A,Franz M

    更新日期:2017-11-08 00:00:00

  • Genetic Dissection of Grain Yield and Agronomic Traits in Maize under Optimum and Low-Nitrogen Stressed Environments.

    abstract::Understanding the genetic basis of maize grain yield and other traits under low-nitrogen (N) stressed environments could improve selection efficiency. In this study, five doubled haploid (DH) populations were evaluated under optimum and N-stressed conditions, during the main rainy season and off-season in Kenya and Rw...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21020543

    authors: Tadesse Ertiro B,Olsen M,Das B,Gowda M,Labuschagne M

    更新日期:2020-01-15 00:00:00

  • Injectable Systems for Intra-Articular Delivery of Mesenchymal Stromal Cells for Cartilage Treatment: A Systematic Review of Preclinical and Clinical Evidence.

    abstract::Stem cell-based therapy is a promising approach to treat cartilage lesions and clinical benefits have been reported in a number of studies. However, the efficacy of cell injection procedures may be impaired by cell manipulation and damage as well as by cell dissemination to non-target tissues. To overcome such issues,...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19113322

    authors: Roffi A,Nakamura N,Sanchez M,Cucchiarini M,Filardo G

    更新日期:2018-10-25 00:00:00

  • The role of peritoneal alternatively activated macrophages in the process of peritoneal fibrosis related to peritoneal dialysis.

    abstract::It has been confirmed that alternatively activated macrophages (M2) participate in tissue remodeling and fibrosis occurrence, but the effect of M2 on peritoneal fibrosis related to peritoneal dialysis (PD) hasn't been elucidated. This study was therefore conducted to assess the association between M2 and peritoneal fi...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms140510369

    authors: Wang J,Jiang ZP,Su N,Fan JJ,Ruan YP,Peng WX,Li YF,Yu XQ

    更新日期:2013-05-17 00:00:00

  • lncRNA_Mdeep: An Alignment-Free Predictor for Distinguishing Long Non-Coding RNAs from Protein-Coding Transcripts by Multimodal Deep Learning.

    abstract::Long non-coding RNAs (lncRNAs) play crucial roles in diverse biological processes and human complex diseases. Distinguishing lncRNAs from protein-coding transcripts is a fundamental step for analyzing the lncRNA functional mechanism. However, the experimental identification of lncRNAs is expensive and time-consuming. ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21155222

    authors: Fan XN,Zhang SW,Zhang SY,Ni JJ

    更新日期:2020-07-23 00:00:00

  • In Vitro Innovation of Tendon Tissue Engineering Strategies.

    abstract::Tendinopathy is the term used to refer to tendon disorders. Spontaneous adult tendon healing results in scar tissue formation and fibrosis with suboptimal biomechanical properties, often resulting in poor and painful mobility. The biomechanical properties of the tissue are negatively affected. Adult tendons have a lim...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21186726

    authors: Citeroni MR,Ciardulli MC,Russo V,Della Porta G,Mauro A,El Khatib M,Di Mattia M,Galesso D,Barbera C,Forsyth NR,Maffulli N,Barboni B

    更新日期:2020-09-14 00:00:00

  • Genetic Risk Profiling in Parkinson's Disease and Utilizing Genetics to Gain Insight into Disease-Related Biological Pathways.

    abstract::Parkinson's disease (PD) is a complex disorder underpinned by both environmental and genetic factors. The latter only began to be understood around two decades ago, but since then great inroads have rapidly been made into deconvoluting the genetic component of PD. In particular, recent large-scale projects such as gen...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21197332

    authors: Hall A,Bandres-Ciga S,Diez-Fairen M,Quinn JP,Billingsley KJ

    更新日期:2020-10-04 00:00:00

  • Assessment of Dextran Antigenicity of Intravenous Iron Preparations with Enzyme-Linked Immunosorbent Assay (ELISA).

    abstract::Intravenous iron preparations are typically classified as non-dextran-based or dextran/dextran-based complexes. The carbohydrate shell for each of these preparations is unique and is key in determining the various physicochemical properties, the metabolic pathway, and the immunogenicity of the iron-carbohydrate comple...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17071185

    authors: Neiser S,Koskenkorva TS,Schwarz K,Wilhelm M,Burckhardt S

    更新日期:2016-07-21 00:00:00

  • Impact of tRNA Modifications and tRNA-Modifying Enzymes on Proteostasis and Human Disease.

    abstract::Transfer RNAs (tRNAs) are key players of protein synthesis, as they decode the genetic information organized in mRNA codons, translating them into the code of 20 amino acids. To be fully active, tRNAs undergo extensive post-transcriptional modifications, catalyzed by different tRNA-modifying enzymes. Lack of these mod...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19123738

    authors: Pereira M,Francisco S,Varanda AS,Santos M,Santos MAS,Soares AR

    更新日期:2018-11-24 00:00:00

  • The Novel Roles of Connexin Channels and Tunneling Nanotubes in Cancer Pathogenesis.

    abstract::Neoplastic growth and cellular differentiation are critical hallmarks of tumor development. It is well established that cell-to-cell communication between tumor cells and "normal" surrounding cells regulates tumor differentiation and proliferation, aggressiveness, and resistance to treatment. Nevertheless, the mechani...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19051270

    authors: Valdebenito S,Lou E,Baldoni J,Okafo G,Eugenin E

    更新日期:2018-04-24 00:00:00

  • Toward the understanding of the metabolism of levodopa I. DFT investigation of the equilibrium geometries, acid-base properties and levodopa-water complexes.

    abstract::Levodopa (LD) is used to increase dopamine level for treating Parkinson's disease. The major metabolism of LD to produce dopamine is decarboxylation. In order to understand the metabolism of LD; the electronic structure of levodopa was investigated at the Density Functional DFT/B3LYP level of theory using the 6-311+G*...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms13044321

    authors: Elroby SA,Makki MS,Sobahi TR,Hilal RH

    更新日期:2012-01-01 00:00:00

  • The Possible Importance of β3 Integrins for Leukemogenesis and Chemoresistance in Acute Myeloid Leukemia.

    abstract::Acute myeloid leukemia (AML) is an aggressive bone marrow malignancy where the immature leukemia cells communicate with neighboring cells through constitutive cytokine release and through their cell surface adhesion molecules. The primary AML cells express various integrins. These heterodimeric molecules containing an...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19010251

    authors: Johansen S,Brenner AK,Bartaula-Brevik S,Reikvam H,Bruserud Ø

    更新日期:2018-01-15 00:00:00

  • The Incremental Induction of Neuroprotective Properties by Multiple Therapeutic Strategies for Primary and Secondary Neural Injury.

    abstract::Neural diseases including injury by endogenous factors, traumatic brain injury, and degenerative neural injury are eventually due to reactive oxygen species (ROS). Thus ROS generation in neural tissues is a hallmark feature of numerous forms of neural diseases. Neural degeneration and the neural damage process is comp...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms160819657

    authors: Lee S,Park S,Won J,Lee SR,Chang KT,Hong Y

    更新日期:2015-08-19 00:00:00

  • Clarifying the Ghrelin System's Ability to Regulate Feeding Behaviours Despite Enigmatic Spatial Separation of the GHSR and Its Endogenous Ligand.

    abstract::Ghrelin is a hormone predominantly produced in and secreted from the stomach. Ghrelin is involved in many physiological processes including feeding, the stress response, and in modulating learning, memory and motivational processes. Ghrelin does this by binding to its receptor, the growth hormone secretagogue receptor...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18040859

    authors: Edwards A,Abizaid A

    更新日期:2017-04-19 00:00:00

  • Homogenized finite element analysis on effective elastoplastic mechanical behaviors of composite with imperfect interfaces.

    abstract::A three-dimensional (3D) representative volume element (RVE) model was developed for analyzing effective mechanical behavior of fiber-reinforced ceramic matrix composites with imperfect interfaces. In the model, the fiber is assumed to be perfectly elastic until its tensile strength, and the ceramic material is modele...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms151223389

    authors: Jiang WG,Zhong RZ,Qin QH,Tong YG

    更新日期:2014-12-16 00:00:00

  • Alpha-Synuclein RNA Expression is Increased in Major Depression.

    abstract::Alpha-synuclein (SNCA) is a small membrane protein that plays an important role in neuro-psychiatric diseases. It is best known for its abnormal subcellular aggregation in Lewy bodies that serves as a hallmark of Parkinson's disease (PD). Due to the high comorbidity of PD with depression, we investigated the role of S...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20082029

    authors: Rotter A,Lenz B,Pitsch R,Richter-Schmidinger T,Kornhuber J,Rhein C

    更新日期:2019-04-25 00:00:00

  • Binding of ochratoxin A to a urinary globulin: a new concept to account for gender difference in rat nephrocarcinogenic responses.

    abstract::SDS-gradient mini-gel electrophoresis and immunoblotting of urine of rats given ochratoxin A (OTA), showed OTA binding to an alpha2u-globulin. Perceived potential internalised delivery of OTA to proximal tubule epithelia by the carrier, specific only to adult male rats and augmenting other uptake mechanisms, suggests ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms9050719

    authors: Mantle PG,Nagy JM

    更新日期:2008-05-01 00:00:00

  • Proteomic study of differential protein expression in mouse lung tissues after aerosolized ricin poisoning.

    abstract::Ricin is one of the most poisonous natural toxins from plants and is classified as a Class B biological threat pathogen by the Centers for Disease Control and Prevention (CDC) of U.S.A. Ricin exposure can occur through oral or aerosol routes. Ricin poisoning has a rapid onset and a short incubation period. There is no...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms15057281

    authors: Guo Z,Han C,Du J,Zhao S,Fu Y,Zheng G,Sun Y,Zhang Y,Liu W,Wan J,Qian J,Liu L

    更新日期:2014-04-28 00:00:00

  • Identifying the Pathological Domain of Alpha- Synuclein as a Therapeutic for Parkinson's Disease.

    abstract::Alpha-synuclein is considered the major pathological protein associated with Parkinson's disease, but there is still no effective immunotherapy which targets alpha-synuclein. In order to create a safer and more effective therapy against PD, we are targeting an epitope of alpha-synuclein rather than full-length alpha-s...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20092338

    authors: Shen N,Song G,Yang H,Lin X,Brown B,Hong Y,Cai J,Cao C

    更新日期:2019-05-11 00:00:00

  • Induction of Oxidative Stress and Mitochondrial Dysfunction by Juglone Affects the Development of Bovine Oocytes.

    abstract::Juglone, a major naphthalenedione component of walnut trees, has long been used in traditional medicine as an antimicrobial and antitumor agent. Nonetheless, its impact on oocyte and preimplantation embryo development has not been entirely clarified. Using the bovine model, we sought to elucidate the impact of juglone...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms22010168

    authors: Mesalam AA,El-Sheikh M,Joo MD,Khalil AAK,Mesalam A,Ahn MJ,Kong IK

    更新日期:2020-12-26 00:00:00

  • Identification, Characterization and Synthesis of Walterospermin, a Sperm Motility Activator from the Egyptian Black Snake Walterinnesia aegyptia Venom.

    abstract::Animal venoms are small natural mixtures highly enriched in bioactive components. They are known to target at least two important pharmacological classes of cell surface receptors: ion channels and G protein coupled receptors. Since sperm cells express a wide variety of ion channels and membrane receptors, required fo...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21207786

    authors: Abd El-Aziz TM,Jaquillard L,Bourgoin-Voillard S,Martinez G,Triquigneaux M,Zoukimian C,Combemale S,Hograindleur JP,Al Khoury S,Escoffier J,Michelland S,Bulet P,Beroud R,Seve M,Arnoult C,De Waard M

    更新日期:2020-10-21 00:00:00

  • Myosin and Other Energy-Transducing ATPases: Structural Dynamics Studied by Electron Paramagnetic Resonance.

    abstract::The objective of this article was to document the energy-transducing and regulatory interactions in supramolecular complexes such as motor, pump, and clock ATPases. The dynamics and structural features were characterized by motion and distance measurements using spin-labeling electron paramagnetic resonance (EPR) spec...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21020672

    authors: Arata T

    更新日期:2020-01-20 00:00:00

  • Differentiation of Adsorptive and Viscous Effects of Dietary Fibres on Bile Acid Release by Means of In Vitro Digestion and Dialysis.

    abstract::To explain the cholesterol-reducing effects of dietary fibres, one of the major mechanisms proposed is the reduced reabsorption of bile acids in the ileum. The interaction of dietary fibres with bile acids is associated with their viscous or adsorptive effects. Since these fibre characteristics are difficult to invest...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19082193

    authors: Naumann S,Schweiggert-Weisz U,Bader-Mittermaier S,Haller D,Eisner P

    更新日期:2018-07-27 00:00:00

  • KCND3-Related Neurological Disorders: From Old to Emerging Clinical Phenotypes.

    abstract::KCND3 encodes the voltage-gated potassium ion channel subfamily D member 3, a six trans-membrane protein (Kv4.3), involved in the transient outward K+ current. KCND3 defect causes both cardiological and neurological syndromes. From a neurological perspective, Kv4.3 defect has been associated to SCA type 19/22, a compl...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21165802

    authors: Pollini L,Galosi S,Tolve M,Caputi C,Carducci C,Angeloni A,Leuzzi V

    更新日期:2020-08-13 00:00:00

  • Evaluation of the Potential Risk of Drugs to Induce Hepatotoxicity in Human-Relationships between Hepatic Steatosis Observed in Non-Clinical Toxicity Study and Hepatotoxicity in Humans.

    abstract::In the development of drugs, we sometimes encounter fatty change of the hepatocytes (steatosis) which is not accompanied by degenerative change in the liver in non-clinical toxicity studies. In this study, we investigated the relationships between fatty change of the hepatocytes noted in non-clinical toxicity studies ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18040810

    authors: Goda K,Kobayashi A,Takahashi A,Takahashi T,Saito K,Maekawa K,Saito Y,Sugai S

    更新日期:2017-04-12 00:00:00

  • Sex Differences in Urate Handling.

    abstract::Hyperuricemia, or elevated serum urate, causes urate kidney stones and gout and also increases the incidence of many other conditions including renal disease, cardiovascular disease, and metabolic syndrome. As we gain mechanistic insight into how urate contributes to human disease, a clear sex difference has emerged i...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21124269

    authors: Halperin Kuhns VL,Woodward OM

    更新日期:2020-06-16 00:00:00