Abstract:
:Identification of patients with early stage non-small cell lung cancer (NSCLC) with high risk of recurrence could help identify patients who would receive additional benefit from adjuvant therapy. In this work, we present a computational histomorphometric image classifier using nuclear orientation, texture, shape, and tumor architecture to predict disease recurrence in early stage NSCLC from digitized H&E tissue microarray (TMA) slides. Using a retrospective cohort of early stage NSCLC patients (Cohort #1, n = 70), we constructed a supervised classification model involving the most predictive features associated with disease recurrence. This model was then validated on two independent sets of early stage NSCLC patients, Cohort #2 (n = 119) and Cohort #3 (n = 116). The model yielded an accuracy of 81% for prediction of recurrence in the training Cohort #1, 82% and 75% in the validation Cohorts #2 and #3 respectively. A multivariable Cox proportional hazard model of Cohort #2, incorporating gender and traditional prognostic variables such as nodal status and stage indicated that the computer extracted histomorphometric score was an independent prognostic factor (hazard ratio = 20.81, 95% CI: 6.42-67.52, P < 0.001).
journal_name
Sci Repjournal_title
Scientific reportsauthors
Wang X,Janowczyk A,Zhou Y,Thawani R,Fu P,Schalper K,Velcheti V,Madabhushi Adoi
10.1038/s41598-017-13773-7subject
Has Abstractpub_date
2017-10-19 00:00:00pages
13543issue
1issn
2045-2322pii
10.1038/s41598-017-13773-7journal_volume
7pub_type
杂志文章abstract::In this paper, the annually average Defense Meteorological Satellite Program-Operational Linescan System (DMSP/OLS) night-time light data is first proposed as a surrogate indicator to mine and forecast the average housing prices in the inland capital cities of China. First, based on the time-series analysis of individ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-64506-2
更新日期:2020-05-07 00:00:00
abstract::Some 1,3-diarylureas and 1-((1,4-trans)-4-aryloxycyclohexyl)-3-arylureas (cHAUs) activate heme-regulated kinase causing protein synthesis inhibition via phosphorylation of the eukaryotic translation initiation factor 2 (eIF2) in mammalian cancer cells. To evaluate if these agents have potential to inhibit trypanosome ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-23259-9
更新日期:2018-03-20 00:00:00
abstract::For the application of formic acid as a liquid organic hydrogen carrier, development of efficient catalysts for dehydrogenation of formic acid is a challenging topic, and most studies have so far focused on the composition of metals and supports, the size effect of metal nanoparticles, and surface chemistry of support...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep33502
更新日期:2016-09-26 00:00:00
abstract::Similar to the onset phase of inflammation, its resolution is a process that unfolds in a manner that is coordinated and regulated by a panel of mediators. Lipoxin A4 (LXA4) has been implicated as an anti-inflammatory, pro-resolving mediator. We hypothesized that LXA4 attenuates or prevents an inflammatory response vi...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-27194-7
更新日期:2018-06-11 00:00:00
abstract::NGS (Next Generation Sequencing) technologies allows us to determine key gene expression signatures that correlate with resistance (and responsiveness) to anti-cancer therapeutics. We have undertaken a transcriptomic and chromatin immunoprecipitation followed by sequencing (ChIP-seq) approach to describe differences i...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-41672-6
更新日期:2019-03-26 00:00:00
abstract::One-year time series of current velocities and hydrographic parameters based on four deep moorings deployed east of the Luzon Strait are employed to study the deep current at the western boundary (DCWB) of the northern Philippine Basin. While the mean current is relatively weak, the DCWB is highly variable on an intra...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-32541-9
更新日期:2018-09-25 00:00:00
abstract::Huntington's disease (HD) is a progressive, dominantly inherited neurological disorder caused by an abnormal expansion of polyglutamine (polyQ) repeat within the Huntingtin (Htt) protein with no disease modifying treatments. In a Drosophila model of HD, expression of mutant Huntingtin (Htt) protein with expanded polyQ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep18736
更新日期:2016-01-05 00:00:00
abstract::The Farnesoid X receptor (FXR) regulates bile salt, glucose and cholesterol homeostasis by binding to DNA response elements, thereby activating gene expression (direct transactivation). FXR also inhibits the immune response via tethering to NF-κB (tethering transrepression). FXR activation therefore has therapeutic po...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep14086
更新日期:2015-09-15 00:00:00
abstract::Uniaxial-stress experiments have been performed for the 3287- and 2445-cm-1 local vibrational modes assigned to the positive charge state of interstitial hydrogen [Formula: see text] and deuterium [Formula: see text], respectively, occurring in mono-crystalline rutile TiO2. The onset of the defect alignment under the ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-16660-3
更新日期:2017-12-06 00:00:00
abstract::We report on high-performance thermochromic ZrO2/V0.982W0.018O2/ZrO2 coatings with a low transition temperature prepared on glass by a low-temperature scalable deposition technique. The V0.982W0.018O2 layers were deposited by a controlled high-power impulse magnetron sputtering of V target, combined with a simultaneou...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-68002-5
更新日期:2020-07-06 00:00:00
abstract::Establishing robust genome engineering methods in the malarial parasite, Plasmodium falciparum, has the potential to substantially improve the efficiency with which we gain understanding of this pathogen's biology to propel treatment and elimination efforts. Methods for manipulating gene expression and engineering the...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-77644-4
更新日期:2021-01-11 00:00:00
abstract::Determining accurate absolute surface energies for polar surfaces of semiconductors has been a great challenge in decades. Here, we propose pseudo-hydrogen passivation to calculate them, using density functional theory approaches. By calculating the energy contribution from pseudo-hydrogen using either a pseudo molecu...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep20055
更新日期:2016-02-01 00:00:00
abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper. ...
journal_title:Scientific reports
pub_type: 已发布勘误
doi:10.1038/s41598-018-22719-6
更新日期:2018-03-20 00:00:00
abstract::The impact of statin therapy on plasma asymmetric dimethylarginine (ADMA) levels has not been conclusively studied. Therefore the aim of the meta-analysis was to assess the effect of statins on circulating ADMA levels. We searched selected databases (up to August 2014) to identify randomized controlled trials (RCTs) t...
journal_title:Scientific reports
pub_type: 杂志文章,meta分析,评审
doi:10.1038/srep09902
更新日期:2015-05-13 00:00:00
abstract::Until now, the only kind of practical quantum private query (QPQ), quantum-key-distribution (QKD)-based QPQ, focuses on the retrieval of a single bit. In fact, meaningful message is generally composed of multiple adjacent bits (i.e., a multi-bit block). To obtain a message a1a2···al from database, the user Alice has t...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep07537
更新日期:2014-12-18 00:00:00
abstract::The topical application of lactic acid bacteria (LAB) is recognized as a useful approach to improve skin health. This work aims to characterize by a multidisciplinary approach, the wound healing, anti-inflammatory, anti-pathogens and proteomic effects of six LAB lysates, belonging to the genus Lactobacillus. Our resul...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-68483-4
更新日期:2020-07-14 00:00:00
abstract::In this study, the improved Aesop's fable paradigm-a series of experiments originally used to test whether some animals understand the causality associated with water replacement-was used to explore the cognitive ability of Azure-winged magpies (Cyanopica cyanus). Experimental results on causal cue tasks showed that t...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-80452-5
更新日期:2021-01-12 00:00:00
abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper. ...
journal_title:Scientific reports
pub_type: 已发布勘误
doi:10.1038/s41598-018-28391-0
更新日期:2018-07-11 00:00:00
abstract::Microbial life below the seafloor has changed over geological time, but these changes are often not obvious, as they are not recorded in the sediment. Sulphur (S) isotope values in pyrite extracted from a Plio- to Holocene sequence of the Peru Margin (Ocean Drilling Program, ODP, Site 1229) show a down-core pattern th...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-36943-7
更新日期:2019-01-24 00:00:00
abstract::We propose an error correction procedure based on a cellular automaton, the sweep rule, which is applicable to a broad range of codes beyond topological quantum codes. For simplicity, however, we focus on the three-dimensional toric code on the rhombic dodecahedral lattice with boundaries and prove that the resulting ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-021-81138-2
更新日期:2021-01-21 00:00:00
abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...
journal_title:Scientific reports
pub_type: 已发布勘误
doi:10.1038/s41598-018-37593-5
更新日期:2018-12-21 00:00:00
abstract::The complexity of the frictional dynamics at the microscopic scale makes difficult to identify all of its controlling parameters. Indeed, experiments on sheared elastic bodies have shown that the static friction coefficient depends on loading conditions, the real area of contact along the interfaces and the confining ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep06772
更新日期:2014-10-27 00:00:00
abstract::DNA methylation is an essential epigenetic marker associated with the silencing of gene expression. Although various genome-wide studies revealed aberrantly methylated gene targets as molecular biomarkers for early detection, the survival rate of lung cancer patients is still poor. In order to identify methylation-dri...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep42573
更新日期:2017-02-15 00:00:00
abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...
journal_title:Scientific reports
pub_type: 已发布勘误
doi:10.1038/s41598-020-65652-3
更新日期:2020-05-27 00:00:00
abstract::Boolean multiplex (multilevel) networks (BMNs) are currently receiving considerable attention as theoretical arguments for modeling of biological systems and system level analysis. Studying control-related problems in BMNs may not only provide new views into the intrinsic control in complex biological systems, but als...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep46495
更新日期:2017-04-28 00:00:00
abstract::Global climate change (GCC) can negatively affect freshwater ecosystems. However, the degree to which freshwater populations can acclimate to long-term warming and the underlying molecular mechanisms are not yet fully understood. We used the cooling water discharge (CWD) area of a power plant as a model for long-term ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep39476
更新日期:2016-12-20 00:00:00
abstract::Physical activity (PA) is known to influence cognitive function. However, the impact of PA on patients with cerebrovascular disease (CVD) has not yet been elucidated. PA and cognitive function have not been measured simultaneously over time, which makes it difficult to evaluate their relationship. The purpose of this ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-40460-6
更新日期:2019-03-07 00:00:00
abstract::Tacrolimus has a narrow therapeutic window and considerable variability in clinical use. Our goal was to compare the performance of multiple linear regression (MLR) and eight machine learning techniques in pharmacogenetic algorithm-based prediction of tacrolimus stable dose (TSD) in a large Chinese cohort. A total of ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep42192
更新日期:2017-02-08 00:00:00
abstract::The metabolic balance of the most extensive bioma on the Earth is a controversial topic of the global-change research. High ultraviolet radiation (UVR) levels by the shoaling of upper mixed layers and increasing atmospheric dust deposition from arid regions may unpredictably alter the metabolic state of marine oligotr...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep35892
更新日期:2016-10-24 00:00:00
abstract::Although the power conversion efficiency (PCE) of perovskite solar cells (PSCs) reached up to 23%, their short lifetime and fast degradation still remain as the main challenges. In this work, a new facile optical method based on the high power UV-irradiation is presented for the recovery of the degraded PSCs. Addition...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-45756-1
更新日期:2019-07-01 00:00:00