Whole genome characterization of sequence diversity of 15,220 Icelanders.

abstract：:Functional trait databases are emerging as crucial tools for a wide range of ecological studies across the world. Here, we provide a database of functional traits for vascular plant species of the Mediterranean Basin. The database includes 25,764 individual records of 44 traits from 2,457 plant taxa distributed in 119...

journal_title：Scientific data

authors： Tavşanoğlu Ç,Pausas JG

更新日期：2018-07-10 00:00:00

abstract：:East Africa is a drought prone, food and water insecure region with a highly variable climate. This complexity makes rainfall estimation challenging, and this challenge is compounded by low rain gauge densities and inhomogeneous monitoring networks. The dearth of observations is particularly problematic over the past ...

journal_title：Scientific data

authors： Funk C,Nicholson SE,Landsfeld M,Klotter D,Peterson P,Harrison L

更新日期：2015-09-29 00:00:00

abstract：:The human HCC1806 cell line is frequently used as a preclinical model for triple negative breast cancer (TNBC). Given that dysregulated epigenetic mechanisms are involved in cancer pathogenesis, emerging therapeutic strategies target chromatin regulators, such as histone deacetylases. A comprehensive understanding of ...

journal_title：Scientific data

authors： Perreault AA,Sprunger DM,Venters BJ

更新日期：2019-03-05 00:00:00

abstract：:Semiconducting inorganic materials with band gaps ranging between 0 and 5 eV constitute major components in electronic, optoelectronic and photovoltaic devices. Since the band gap is a primary material property that affects the device performance, large band-gap databases are useful in selecting optimal materials in e...

journal_title：Scientific data

authors： Kim S,Lee M,Hong C,Yoon Y,An H,Lee D,Jeong W,Yoo D,Kang Y,Youn Y,Han S

更新日期：2020-11-11 00:00:00

abstract：:In the last few decades, data-driven methods have come to dominate many fields of scientific inquiry. Open data and open-source software have enabled the rapid implementation of novel methods to manage and analyze the growing flood of data. However, it has become apparent that many scientific fields exhibit distressin...

journal_title：Scientific data

authors： Pasquier T,Lau MK,Trisovic A,Boose ER,Couturier B,Crosas M,Ellison AM,Gibson V,Jones CR,Seltzer M

更新日期：2017-09-05 00:00:00

abstract：:The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vi...

journal_title：Scientific data

authors： Aevermann BD,Pickett BE,Kumar S,Klem EB,Agnihothram S,Askovich PS,Bankhead A 3rd,Bolles M,Carter V,Chang J,Clauss TR,Dash P,Diercks AH,Eisfeld AJ,Ellis A,Fan S,Ferris MT,Gralinski LE,Green RR,Gritsenko MA,Hatta M

更新日期：2014-10-14 00:00:00

abstract：:Cross sectional imaging is essential for the patient-specific planning and delivery of radiotherapy, a primary determinant of head and neck cancer outcomes. Due to challenges ensuring data quality and patient de-identification, publicly available datasets including diagnostic and radiation treatment planning imaging a...

journal_title：Scientific data

authors： Grossberg AJ,Mohamed ASR,Elhalawani H,Bennett WC,Smith KE,Nolan TS,Williams B,Chamchod S,Heukelom J,Kantor ME,Browne T,Hutcheson KA,Gunn GB,Garden AS,Morrison WH,Frank SJ,Rosenthal DI,Freymann JB,Fuller CD

更新日期：2018-09-04 00:00:00

abstract：:Today's scientific data are primarily stored and accessed via centralized Web-based infrastructure. Centralization has advantages but also carries risks such as link rot and content drift, which can hinder scientific progress. It is time to ask whether traditional, centralized Web architecture aligns with scholarly pr...

journal_title：Scientific data

authors： Robinson DC,Hand JA,Madsen MB,McKelvey KR

更新日期：2018-10-23 00:00:00

abstract：:Rett syndrome is an X-linked neurodevelopmental disorder caused by mutation in the methyl-CpG-binding protein 2 gene (MECP2) in the majority of cases. We describe an RNA sequencing dataset of postmortem brain tissue samples from four females clinically diagnosed with Rett syndrome and four age-matched female donors. T...

journal_title：Scientific data

authors： Aldinger KA,Timms AE,MacDonald JW,McNamara HK,Herstein JS,Bammler TK,Evgrafov OV,Knowles JA,Levitt P

更新日期：2020-06-19 00:00:00

abstract：:Transparent evaluations of FAIRness are increasingly required by a wide range of stakeholders, from scientists to publishers, funding agencies and policy makers. We propose a scalable, automatable framework to evaluate digital resources that encompasses measurable indicators, open source tools, and participation guide...

journal_title：Scientific data

authors： Wilkinson MD,Dumontier M,Sansone SA,Bonino da Silva Santos LO,Prieto M,Batista D,McQuilton P,Kuhn T,Rocca-Serra P,Crosas M,Schultes E

更新日期：2019-09-20 00:00:00

abstract：:Ticks carry pathogens that can cause disease in both animals and humans, and there is a need to monitor the distribution and abundance of ticks and the pathogens they carry to pinpoint potential high risk areas for tick-borne disease transmission. In a joint Scandinavian study, we measured Ixodes ricinus instar abunda...

journal_title：Scientific data

authors： Kjær LJ,Klitgaard K,Soleng A,Edgar KS,Lindstedt HEH,Paulsen KM,Andreassen ÅK,Korslund L,Kjelland V,Slettan A,Stuen S,Kjellander P,Christensson M,Teräväinen M,Baum A,Jensen LM,Bødker R

更新日期：2020-07-16 00:00:00

abstract：:Many animal phyla have no representatives within the catalog of whole metazoan genome sequences. This dataset fills in one gap in the genome knowledge of animal phyla with a draft genome of Bugula neritina (phylum Bryozoa). Interest in this species spans ecology and biomedical sciences because B. neritina is the natur...

journal_title：Scientific data

authors： Rayko M,Komissarov A,Kwan JC,Lim-Fong G,Rhodes AC,Kliver S,Kuchur P,O'Brien SJ,Lopez JV

更新日期：2020-10-20 00:00:00

abstract：:Gene-gene (GXG) and gene-environment (GXE) interactions play important roles in pharmacogenetics study. Simultaneously incorporating multiple single nucleotide polymorphisms (SNPs) and clinical factors is needed to explore the association of their interactions with drug response and toxicity phenotypes. We genotyped 5...

journal_title：Scientific data

authors： Wang LY,Cui JJ,Liu JY,Guo AX,Zhao ZY,Liu YZ,Wu JC,Li M,Hu CP,Gao Y,Zhou HH,Yin JY

更新日期：2018-12-11 00:00:00

abstract：:The immune response to major trauma has been analysed mainly within post-hospital admission settings where the inflammatory response is already underway and the early drivers of clinical outcome cannot be readily determined. Thus, there is a need to better understand the immediate immune response to injury and how thi...

journal_title：Scientific data

authors： Bravo-Merodio L,Acharjee A,Hazeldine J,Bentley C,Foster M,Gkoutos GV,Lord JM

更新日期：2019-12-19 00:00:00

abstract：:Lysosomes are the main degradative organelles of cells and involved in a variety of processes including the recycling of macromolecules, storage of compounds, and metabolic signaling. Despite an increasing interest in the proteomic analysis of lysosomes, no systematic study of sample preparation protocols for lysosome...

journal_title：Scientific data

authors： Ponnaiyan S,Akter F,Singh J,Winter D

更新日期：2020-02-26 00:00:00

abstract：:Metadata that are structured using principled schemas and that use terms from ontologies are essential to making biomedical data findable and reusable for downstream analyses. The largest source of metadata that describes the experimental protocol, funding, and scientific leadership of clinical studies is ClinicalTria...

journal_title：Scientific data

authors： Miron L,Gonçalves RS,Musen MA

更新日期：2020-12-18 00:00:00

abstract：:In this paper we analyse the spatial footprint and temporal clustering of extreme sea level and skew surge events around the UK coast over the last 100 years (1915-2014). The vast majority of the extreme sea level events are generated by moderate, rather than extreme skew surges, combined with spring astronomical high...

journal_title：Scientific data

authors： Haigh ID,Wadey MP,Wahl T,Ozsoy O,Nicholls RJ,Brown JM,Horsburgh K,Gouldby B

更新日期：2016-12-06 00:00:00

abstract：:Orchids are renowned for their spectacular flowers and ecological adaptations. After the sequencing of the genome of the tropical epiphytic orchid Phalaenopsis equestris, we combined Illumina HiSeq2000 for RNA-Seq and Trinity for de novo assembly to characterize the transcriptomes for 11 diverse P. equestris tissues r...

journal_title：Scientific data

authors： Niu SC,Xu Q,Zhang GQ,Zhang YQ,Tsai WC,Hsu JL,Liang CK,Luo YB,Liu ZJ

更新日期：2016-09-27 00:00:00

abstract：:Induced pluripotent stem cells (iPSCs) and human embryonic stem cells (hESCs) differentiated into hepatocyte-like cells (HLCs) provide a defined and renewable source of cells for drug screening, toxicology and regenerative medicine. We previously reprogrammed human fetal foreskin fibroblast cells (HFF1) into iPSCs emp...

journal_title：Scientific data

authors： Wruck W,Adjaye J

更新日期：2018-03-13 00:00:00

abstract：:Structural studies of challenging targets such as G protein-coupled receptors (GPCRs) have accelerated during the last several years due to the development of new approaches, including small-wedge and serial crystallography. Here, we describe the deposition of seven datasets consisting of X-ray diffraction images acqu...

journal_title：Scientific data

authors： Marin E,Luginina A,Gusach A,Kovalev K,Bukhdruker S,Khorn P,Polovinkin V,Lyapina E,Rogachev A,Gordeliy V,Mishin A,Cherezov V,Borshchevskiy V

更新日期：2020-11-12 00:00:00

abstract：:Disease surveillance systems worldwide face increasing pressure to maintain and distribute data in usable formats supplemented with effective visualizations to enable actionable policy and programming responses. Annual reports and interactive portals provide access to surveillance data and visualizations depicting tem...

journal_title：Scientific data

authors： Simpson RB,Zhou B,Alarcon Falconi TM,Naumova EN

更新日期：2020-10-13 00:00:00

abstract：:One important use of genome-wide transcriptional profiles is to identify relationships between transcription levels and patient outcomes. These translational insights can guide the development of biomarkers for clinical application. Data from thousands of translational-biomarker studies have been deposited in public r...

journal_title：Scientific data

authors： Golightly NP,Bell A,Bischoff AI,Hollingsworth PD,Piccolo SR

更新日期：2018-04-17 00:00:00

abstract：:In Eco-Metabolomics interactions are studied of non-model organisms in their natural environment and relations are made between biochemistry and ecological function. Current challenges when processing such metabolomics data involve complex experiment designs which are often carried out in large field campaigns involvi...

journal_title：Scientific data

authors： Peters K,Gorzolka K,Bruelheide H,Neumann S

更新日期：2018-08-28 00:00:00

abstract：:Geological structures are by nature inaccessible to direct observation. This can cause difficulties in applications where a spatially explicit representation of such structures is required, in particular when modelling fluid migration in geological formations. An increasing trend in recent years has been to use analog...

journal_title：Scientific data

authors： Bayer P,Comunian A,Höyng D,Mariethoz G

更新日期：2015-07-07 00:00:00

abstract：:Magnetic resonance imaging (MRI) captures the dynamics of brain development with multiple modalities that quantify both structure and function. These measurements may yield valuable insights into the neural patterns that mark healthy maturation or that identify early risk for psychiatric disorder. The Pediatric Templa...

journal_title：Scientific data

authors： Avants BB,Duda JT,Kilroy E,Krasileva K,Jann K,Kandel BT,Tustison NJ,Yan L,Jog M,Smith R,Wang Y,Dapretto M,Wang DJ

更新日期：2015-02-03 00:00:00

abstract：:In angiogenesis with concurrent inflammation, many pathways are activated, some linked to VEGF and others largely VEGF-independent. Pathways involving inflammatory mediators, chemokines, and micro-RNAs may play important roles in maintaining a pro-angiogenic environment or mediating angiogenic regression. Here, we des...

journal_title：Scientific data

authors： Mukwaya A,Lindvall JM,Xeroudaki M,Peebo B,Ali Z,Lennikov A,Jensen LD,Lagali N

更新日期：2016-11-22 00:00:00

abstract：:Accurately characterizing land surface changes with Earth Observation requires geo-located ground truth. In the European Union (EU), a tri-annual surveyed sample of land cover and land use has been collected since 2006 under the Land Use/Cover Area frame Survey (LUCAS). A total of 1351293 observations at 651780 unique...

journal_title：Scientific data

authors： d'Andrimont R,Yordanov M,Martinez-Sanchez L,Eiselt B,Palmieri A,Dominici P,Gallego J,Reuter HI,Joebges C,Lemoine G,van der Velde M

更新日期：2020-10-16 00:00:00

abstract：:This paper presents a dataset obtained from fifty four laboratory experiments of the breaching of fluvial dikes due to flow overtopping. Data were collected on two complementary experimental setups, each consisting of a main channel representing the river, an erodible lateral dike and a floodplain. The dataset covers ...

journal_title：Scientific data

authors： Rifai I,El Kadi Abderrezzak K,Erpicum S,Archambeau P,Violeau D,Pirotton M,Dewals B

更新日期：2019-05-13 00:00:00

abstract：:With electric heat pumps substituting for fossil-fueled alternatives, the temporal variability of their power consumption becomes increasingly important to the electricity system. To easily include this variability in energy system analyses, this paper introduces the "When2Heat" dataset comprising synthetic national t...

journal_title：Scientific data

authors： Ruhnau O,Hirth L,Praktiknjo A

更新日期：2019-10-01 00:00:00

abstract：:This corrects the article DOI: 10.1038/sdata.2017.37. ...

journal_title：Scientific data

authors： Jungbluth SP,Amend JP,Rappé MS

更新日期：2017-07-04 00:00:00