The Dat Project, an open and decentralized research data tool.

Abstract:

:Today's scientific data are primarily stored and accessed via centralized Web-based infrastructure. Centralization has advantages but also carries risks such as link rot and content drift, which can hinder scientific progress. It is time to ask whether traditional, centralized Web architecture aligns with scholarly priorities and values, and to collaboratively move towards new approaches that do.

journal_name

Sci Data

journal_title

Scientific data

authors

Robinson DC,Hand JA,Madsen MB,McKelvey KR

doi

10.1038/sdata.2018.221

subject

Has Abstract

pub_date

2018-10-23 00:00:00

pages

180221

issn

2052-4463

pii

sdata2018221

journal_volume

5

pub_type

杂志文章
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    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-00672-2

    authors: Ghawaly JM Jr,Nicholson AD,Peplow DE,Anderson-Cook CM,Myers KL,Archer DE,Willis MJ,Quiter BJ

    更新日期:2020-10-05 00:00:00

  • De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups.

    abstract::Gammarids are amphipods found worldwide distributed in fresh and marine waters. They play an important role in aquatic ecosystems and are well established sentinel species in ecotoxicology. In this study, we sequenced the transcriptomes of a male individual and a female individual for seven different taxonomic groups ...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-019-0192-5

    authors: Cogne Y,Degli-Esposti D,Pible O,Gouveia D,François A,Bouchez O,Eché C,Ford A,Geffard O,Armengaud J,Chaumot A,Almunia C

    更新日期:2019-09-27 00:00:00

  • An analecta of visualizations for foodborne illness trends and seasonality.

    abstract::Disease surveillance systems worldwide face increasing pressure to maintain and distribute data in usable formats supplemented with effective visualizations to enable actionable policy and programming responses. Annual reports and interactive portals provide access to surveillance data and visualizations depicting tem...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-00677-x

    authors: Simpson RB,Zhou B,Alarcon Falconi TM,Naumova EN

    更新日期:2020-10-13 00:00:00

  • A draft genome assembly of spotted hyena, Crocuta crocuta.

    abstract::The spotted hyena (Crocuta crocuta), one of the largest terrestrial predators native to sub-Saharan Africa, is well known for its matriarchal social system and large-sized social group in which larger females dominate smaller males. Spotted hyenas are highly adaptable predators as they both actively hunt prey and scav...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-0468-9

    authors: Yang C,Li F,Xiong Z,Koepfli KP,Ryder O,Perelman P,Li Q,Zhang G

    更新日期:2020-04-28 00:00:00

  • Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells.

    abstract::The nuclear receptor estrogen receptor 2 (ESR2, ERβ) modulates cancer cell proliferation and tumor growth, exerting an oncosuppressive role in breast cancer (BC). Interaction proteomics by tandem affinity purification coupled to mass spectrometry was previously applied in BC cells to identify proteins acting in concer...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/sdata.2018.31

    authors: Giurato G,Nassa G,Salvati A,Alexandrova E,Rizzo F,Nyman TA,Weisz A,Tarallo R

    更新日期:2018-03-06 00:00:00

  • A dataset of distribution and diversity of ticks in China.

    abstract::While tick-borne zoonoses, such as Lyme disease and tick-borne encephalitis, present an increasing global concern, knowledge of their vectors' distribution remains limited, especially for China. In this paper, we present the first comprehensive dataset of known tick species and their distributions in China, derived fr...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-019-0115-5

    authors: Zhang G,Zheng D,Tian Y,Li S

    更新日期:2019-07-01 00:00:00

  • Long term survey of the fish community and associated benthic fauna of the Seine estuary nursery grounds.

    abstract::Estuaries are crucial ecosystems where human activities deeply affect numerous ecological functions. Here we present a survey dataset based on the monitoring of fish nursery grounds of the Seine estuary and eastern bay of Seine collected once a year using a beam trawl during three distinct periods (1995-2002, 2008-201...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-0572-x

    authors: Cariou T,Dubroca L,Vogel C

    更新日期:2020-07-13 00:00:00

  • A band-gap database for semiconducting inorganic materials calculated with hybrid functional.

    abstract::Semiconducting inorganic materials with band gaps ranging between 0 and 5 eV constitute major components in electronic, optoelectronic and photovoltaic devices. Since the band gap is a primary material property that affects the device performance, large band-gap databases are useful in selecting optimal materials in e...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-00723-8

    authors: Kim S,Lee M,Hong C,Yoon Y,An H,Lee D,Jeong W,Yoo D,Kang Y,Youn Y,Han S

    更新日期:2020-11-11 00:00:00

  • A synthesis of bacterial and archaeal phenotypic trait data.

    abstract::A synthesis of phenotypic and quantitative genomic traits is provided for bacteria and archaea, in the form of a scripted, reproducible workflow that standardizes and merges 26 sources. The resulting unified dataset covers 14 phenotypic traits, 5 quantitative genomic traits, and 4 environmental characteristics for app...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-0497-4

    authors: Madin JS,Nielsen DA,Brbic M,Corkrey R,Danko D,Edwards K,Engqvist MKM,Fierer N,Geoghegan JL,Gillings M,Kyrpides NC,Litchman E,Mason CE,Moore L,Nielsen SL,Paulsen IT,Price ND,Reddy TBK,Richards MA,Rocha EPC,Schmidt

    更新日期:2020-06-05 00:00:00

  • An annotated fluorescence image dataset for training nuclear segmentation methods.

    abstract::Fully-automated nuclear image segmentation is the prerequisite to ensure statistically significant, quantitative analyses of tissue preparations,applied in digital pathology or quantitative microscopy. The design of segmentation methods that work independently of the tissue type or preparation is complex, due to varia...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-00608-w

    authors: Kromp F,Bozsaky E,Rifatbegovic F,Fischer L,Ambros M,Berneder M,Weiss T,Lazic D,Dörr W,Hanbury A,Beiske K,Ambros PF,Ambros IM,Taschner-Mandl S

    更新日期:2020-08-11 00:00:00

  • Impacts of elevated atmospheric CO₂ on nutrient content of important food crops.

    abstract::One of the many ways that climate change may affect human health is by altering the nutrient content of food crops. However, previous attempts to study the effects of increased atmospheric CO2 on crop nutrition have been limited by small sample sizes and/or artificial growing conditions. Here we present data from a me...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/sdata.2015.36

    authors: Dietterich LH,Zanobetti A,Kloog I,Huybers P,Leakey AD,Bloom AJ,Carlisle E,Fernando N,Fitzgerald G,Hasegawa T,Holbrook NM,Nelson RL,Norton R,Ottman MJ,Raboy V,Sakai H,Sartor KA,Schwartz J,Seneweera S,Usui Y,Yoshina

    更新日期:2015-07-21 00:00:00

  • A data set of global river networks and corresponding water resources zones divisions.

    abstract::As basic data, the river networks and water resources zones (WRZ) are critical for planning, utilization, development, conservation and management of water resources. Currently, the river network and WRZ of world are most obtained based on digital elevation model data automatically, which are not accuracy enough, espe...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-019-0243-y

    authors: Yan D,Wang K,Qin T,Weng B,Wang H,Bi W,Li X,Li M,Lv Z,Liu F,He S,Ma J,Shen Z,Wang J,Bai H,Man Z,Sun C,Liu M,Shi X,Jing L,Sun R,Cao S,Hao C,Wang L,Pei M,Dorjsuren B,Gedefaw M,Girma A,Abiyu A

    更新日期:2019-10-22 00:00:00

  • Two-colour serial femtosecond crystallography dataset from gadoteridol-derivatized lysozyme for MAD phasing.

    abstract::We provide a detailed description of a gadoteridol-derivatized lysozyme (gadolinium lysozyme) two-colour serial femtosecond crystallography (SFX) dataset for multiple wavelength anomalous dispersion (MAD) structure determination. The data was collected at the Spring-8 Angstrom Compact free-electron LAser (SACLA) facil...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/sdata.2017.188

    authors: Gorel A,Motomura K,Fukuzawa H,Doak RB,Grünbein ML,Hilpert M,Inoue I,Kloos M,Nass Kovács G,Nango E,Nass K,Roome CM,Shoeman RL,Tanaka R,Tono K,Foucar L,Joti Y,Yabashi M,Iwata S,Ueda K,Barends TRM,Schlichting I

    更新日期:2017-12-12 00:00:00

  • A multi-species repository of social networks.

    abstract::Social network analysis is an invaluable tool to understand the patterns, evolution, and consequences of sociality. Comparative studies over a range of social systems across multiple taxonomic groups are particularly valuable. Such studies however require quantitative social association or interaction data across mult...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-019-0056-z

    authors: Sah P,Méndez JD,Bansal S

    更新日期:2019-04-29 00:00:00

  • Comprehensive draft of the mouse embryonic fibroblast lysosomal proteome by mass spectrometry based proteomics.

    abstract::Lysosomes are the main degradative organelles of cells and involved in a variety of processes including the recycling of macromolecules, storage of compounds, and metabolic signaling. Despite an increasing interest in the proteomic analysis of lysosomes, no systematic study of sample preparation protocols for lysosome...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-0399-5

    authors: Ponnaiyan S,Akter F,Singh J,Winter D

    更新日期:2020-02-26 00:00:00

  • MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding.

    abstract::The use of DNA metabarcoding to characterise the biodiversity of environmental and community samples has exploded in recent years. However, taxonomic inferences from these studies are contingent on the quality and completeness of the sequence reference database used to characterise sample species-composition. In respo...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-0549-9

    authors: Arranz V,Pearman WS,Aguirre JD,Liggins L

    更新日期:2020-07-03 00:00:00

  • A global view on the effect of water uptake on aerosol particle light scattering.

    abstract::A reference dataset of multi-wavelength particle light scattering and hemispheric backscattering coefficients for different relative humidities (RH) between RH = 30 and 95% and wavelengths between λ = 450 nm and 700 nm is described in this work. Tandem-humidified nephelometer measurements from 26 ground-based sites ar...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-019-0158-7

    authors: Burgos MA,Andrews E,Titos G,Alados-Arboledas L,Baltensperger U,Day D,Jefferson A,Kalivitis N,Mihalopoulos N,Sherman J,Sun J,Weingartner E,Zieger P

    更新日期:2019-08-22 00:00:00

  • Multi-omics profile of the mouse dentate gyrus after kainic acid-induced status epilepticus.

    abstract::Temporal lobe epilepsy (TLE) can develop from alterations in hippocampal structure and circuit characteristics, and can be modeled in mice by administration of kainic acid (KA). Adult neurogenesis in the dentate gyrus (DG) contributes to hippocampal functions and has been reported to contribute to the development of T...

    journal_title:Scientific data

    pub_type: 评论,杂志文章

    doi:10.1038/sdata.2016.68

    authors: Schouten M,Bielefeld P,Fratantoni SA,Hubens CJ,Piersma SR,Pham TV,Voskuyl RA,Lucassen PJ,Jimenez CR,Fitzsimons CP

    更新日期:2016-08-16 00:00:00

  • Large-scale modeled contemporary and future water temperature estimates for 10774 Midwestern U.S. Lakes.

    abstract::Climate change has already influenced lake temperatures globally, but understanding future change is challenging. The response of lakes to changing climate drivers is complex due to the nature of lake-atmosphere coupling, ice cover, and stratification. To better understand the diversity of lake responses to climate ch...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/sdata.2017.53

    authors: Winslow LA,Hansen GJA,Read JS,Notaro M

    更新日期:2017-04-25 00:00:00

  • Spatiotemporal dataset on Chinese population distribution and its driving factors from 1949 to 2013.

    abstract::Spatio-temporal data on human population and its driving factors is critical to understanding and responding to population problems. Unfortunately, such spatio-temporal data on a large scale and over the long term are often difficult to obtain. Here, we present a dataset on Chinese population distribution and its driv...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/sdata.2016.47

    authors: Wang L,Chen L

    更新日期:2016-07-05 00:00:00

  • A lake data set for the Tibetan Plateau from the 1960s, 2005, and 2014.

    abstract::Long-term datasets of number and size of lakes over the Tibetan Plateau (TP) are among the most critical components for better understanding the interactions among the cryosphere, hydrosphere, and atmosphere at regional and global scales. Due to the harsh environment and the scarcity of data over the TP, data accumula...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/sdata.2016.39

    authors: Wan W,Long D,Hong Y,Ma Y,Yuan Y,Xiao P,Duan H,Han Z,Gu X

    更新日期:2016-06-21 00:00:00

  • Long-term surveys of age structure in 13 ungulate and one ostrich species in the Serengeti, 1926-2018.

    abstract::The Serengeti ecosystem spans an extensive network of protected areas in Tanzania, eastern Africa, and a UNESCO Wold Heritage Site. It is home to some of the largest animal migrations on the planet. Here, we describe a dataset consisting of the sample counts of three age classes (infant, juvenile and adult) of 13 ungu...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-00701-0

    authors: Rogy P,Sinclair ARE

    更新日期:2020-10-21 00:00:00

  • A three-dimensional thalamocortical dataset for characterizing brain heterogeneity.

    abstract::Neural microarchitecture is heterogeneous, varying both across and within brain regions. The consistent identification of regions of interest is one of the most critical aspects in examining neurocircuitry, as these structures serve as the vital landmarks with which to map brain pathways. Access to continuous, three-d...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-00692-y

    authors: Prasad JA,Balwani AH,Johnson EC,Miano JD,Sampathkumar V,De Andrade V,Fezzaa K,Du M,Vescovi R,Jacobsen C,Kording KP,Gürsoy D,Gray Roncal W,Kasthuri N,Dyer EL

    更新日期:2020-10-20 00:00:00

  • I-BLEND, a campus-scale commercial and residential buildings electrical energy dataset.

    abstract::Efficient energy consumption at the building level is vital for sustainability. Providing energy efficient systems and solutions requires an understanding of how energy gets consumed. However, there is a general lack of large-scale open datasets about the energy consumption of buildings, which hinders the research. Th...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/sdata.2019.15

    authors: Rashid H,Singh P,Singh A

    更新日期:2019-02-19 00:00:00

  • Tracking vegetation phenology across diverse biomes using Version 2.0 of the PhenoCam Dataset.

    abstract::Monitoring vegetation phenology is critical for quantifying climate change impacts on ecosystems. We present an extensive dataset of 1783 site-years of phenological data derived from PhenoCam network imagery from 393 digital cameras, situated from tropics to tundra across a wide range of plant functional types, biomes...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-019-0229-9

    authors: Seyednasrollah B,Young AM,Hufkens K,Milliman T,Friedl MA,Frolking S,Richardson AD

    更新日期:2019-10-22 00:00:00

  • A database seed for a community-driven material intensity research platform.

    abstract::The data record contains Material Intensity data for buildings (MI). MI coefficients are often used for different types of analysis of socio-economic systems and in particular for environmental assessments. Until now, MI values were compiled and reported ad-hoc with few cross-study comparisons. We extracted and conver...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-019-0021-x

    authors: Heeren N,Fishman T

    更新日期:2019-04-09 00:00:00

  • Transcriptome sequencing, molecular markers, and transcription factor discovery of Platanus acerifolia in the presence of Corythucha ciliata.

    abstract::The London Planetree (Platanus acerifolia) are present throughout the world. The tree is considered a greening plant and is commonly planted in streets, parks, and courtyards. The Sycamore lace bug (Corythucha ciliata) is a serious pest of this tree. To determine the molecular mechanism behind the interaction between ...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-019-0111-9

    authors: Li F,Wu C,Gao M,Jiao M,Qu C,Gonzalez-Uriarte A,Luo C

    更新日期:2019-07-22 00:00:00

  • A structured open dataset of government interventions in response to COVID-19.

    abstract::In response to the COVID-19 pandemic, governments have implemented a wide range of non-pharmaceutical interventions (NPIs). Monitoring and documenting government strategies during the COVID-19 crisis is crucial to understand the progression of the epidemic. Following a content analysis strategy of existing public info...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-00609-9

    authors: Desvars-Larrive A,Dervic E,Haug N,Niederkrotenthaler T,Chen J,Di Natale A,Lasser J,Gliga DS,Roux A,Sorger J,Chakraborty A,Ten A,Dervic A,Pacheco A,Jurczak A,Cserjan D,Lederhilger D,Bulska D,Berishaj D,Tames EF,Álv

    更新日期:2020-08-27 00:00:00

  • Multivariate time series dataset for space weather data analytics.

    abstract::We introduce and make openly accessible a comprehensive, multivariate time series (MVTS) dataset extracted from solar photospheric vector magnetograms in Spaceweather HMI Active Region Patch (SHARP) series. Our dataset also includes a cross-checked NOAA solar flare catalog that immediately facilitates solar flare pred...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-0548-x

    authors: Angryk RA,Martens PC,Aydin B,Kempton D,Mahajan SS,Basodi S,Ahmadzadeh A,Cai X,Filali Boubrahimi S,Hamdi SM,Schuh MA,Georgoulis MK

    更新日期:2020-07-10 00:00:00

  • Oral microbiota and dental caries data from monozygotic and dizygotic twin children.

    abstract::There are recent studies which aimed to detect the inheritance on the etiology of dental caries exploring oral composition. We present data on the oral microbiota and its relation with dental caries and other factors in monozygotic (MZ) and dizygotic (DZ) twin children. Following clinical investigation, DNA samples we...

    journal_title:Scientific data

    pub_type: 杂志文章

    doi:10.1038/s41597-020-00691-z

    authors: Kasimoglu Y,Koruyucu M,Birant S,Karacan I,Topcuoglu N,Tuna EB,Gencay K,Seymen F

    更新日期:2020-10-13 00:00:00