De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris.

abstract：:An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

journal_title：Scientific data

authors： Schweiker M,Abdul-Zahra A,André M,Al-Atrash F,Al-Khatri H,Alprianti RR,Alsaad H,Amin R,Ampatzi E,Arsano AY,Azadeh M,Azar E,Bahareh B,Batagarawa A,Becker S,Buonocore C,Cao B,Choi JH,Chun C,Daanen H,Damiati SA,Dan

更新日期：2020-01-06 00:00:00

abstract：:Studies of chimpanzee vocal communication provide valuable insights into the evolution of communication in complex societies, and also comparative data for understanding the evolution of human language. One particularly valuable dataset of recordings from free-living chimpanzees was collected by Frans X. Plooij and th...

journal_title：Scientific data

authors： Plooij FX,van de Rijt-Plooij H,Fischer M,Wilson ML,Pusey A

更新日期：2015-05-26 00:00:00

abstract：:Metadata that are structured using principled schemas and that use terms from ontologies are essential to making biomedical data findable and reusable for downstream analyses. The largest source of metadata that describes the experimental protocol, funding, and scientific leadership of clinical studies is ClinicalTria...

journal_title：Scientific data

authors： Miron L,Gonçalves RS,Musen MA

更新日期：2020-12-18 00:00:00

abstract：:The COVID-19 pandemic has ignited interest in age-specific manifestations of infection but surprisingly little is known about relative severity of infectious disease between the extremes of age. In a systematic analysis we identified 142 datasets with information on severity of disease by age for 32 different infectio...

journal_title：Scientific data

authors： Glynn JR,Moss PAH

更新日期：2020-10-15 00:00:00

abstract：:In 2010, an estimated 860 million people were living in slums worldwide, with around 60 million added to the slum population between 2000 and 2010. In 2011, 200 million people in urban Indian households were considered to live in slums. In order to address and create slum development programmes and poverty alleviation...

journal_title：Scientific data

authors： Roy D,Palavalli B,Menon N,King R,Pfeffer K,Lees M,Sloot PMA

更新日期：2018-01-09 00:00:00

abstract：:This article presents data derived from a 36 year-long uninterrupted observational study of amphibian populations living in the city and vicinity of Yekaterinburg, Russia. This area is inhabited by six amphibian species. Based on a degree of anthropogenic transformation, the urban territory is divided into five highly...

journal_title：Scientific data

authors： Vershinin VL,Vershinina SD,Berzin DL,Zmeeva DV,Kinev AV

更新日期：2015-05-12 00:00:00

abstract：:Tardigrades are ubiquitous microscopic animals that play an important role in the study of metazoan phylogeny. Most terrestrial tardigrades can withstand extreme environments by entering an ametabolic desiccated state termed anhydrobiosis. Due to their small size and the non-axenic nature of laboratory cultures, molec...

journal_title：Scientific data

authors： Arakawa K,Yoshida Y,Tomita M

更新日期：2016-08-16 00:00:00

abstract：:The corneal endothelium maintains corneal transparency; consequently, damage to this endothelium by a number of pathological conditions results in severe vision loss. Publicly available expression databases of human tissues are useful for investigating the pathogenesis of diseases and for developing new therapeutic mo...

journal_title：Scientific data

authors： Tokuda Y,Okumura N,Komori Y,Hanada N,Tashiro K,Koizumi N,Nakano M

更新日期：2020-11-20 00:00:00

abstract：:Surveys for more than 9,500 households were conducted in the growing seasons 2002/2003 or 2003/2004 in eleven African countries: Burkina Faso, Cameroon, Ghana, Niger and Senegal in western Africa; Egypt in northern Africa; Ethiopia and Kenya in eastern Africa; South Africa, Zambia and Zimbabwe in southern Africa. Hous...

journal_title：Scientific data

authors： Waha K,Zipf B,Kurukulasuriya P,Hassan RM

更新日期：2016-05-24 00:00:00

abstract：:Metastatic colorectal cancer is a leading cause of cancer death. However, current therapy options are limited to chemotherapy, with the addition of anti-EGFR antibodies for patients with RAS wild-type tumours. Novel drug targets, or drug combinations that induce a synergistic response, would be of great benefit to pat...

journal_title：Scientific data

authors： Williams SP,Barthorpe AS,Lightfoot H,Garnett MJ,McDermott U

更新日期：2017-10-03 00:00:00

abstract：:Benthic fauna refers to all fauna that live in or on the seafloor, which researchers typically divide into size classes meiobenthos (32/64 µm-0.5/1 mm), macrobenthos (250 µm-1 cm), and megabenthos (>1 cm). Benthic fauna play important roles in bioturbation activity, mineralization of organic matter, and in marine food...

journal_title：Scientific data

authors： Stratmann T,van Oevelen D,Martínez Arbizu P,Wei CL,Liao JX,Cusson M,Scrosati RA,Archambault P,Snelgrove PVR,Ramey-Balci PA,Burd BJ,Kenchington E,Gilkinson K,Belley R,Soetaert K

更新日期：2020-06-29 00:00:00

abstract：:As basic data, the river networks and water resources zones (WRZ) are critical for planning, utilization, development, conservation and management of water resources. Currently, the river network and WRZ of world are most obtained based on digital elevation model data automatically, which are not accuracy enough, espe...

journal_title：Scientific data

authors： Yan D,Wang K,Qin T,Weng B,Wang H,Bi W,Li X,Li M,Lv Z,Liu F,He S,Ma J,Shen Z,Wang J,Bai H,Man Z,Sun C,Liu M,Shi X,Jing L,Sun R,Cao S,Hao C,Wang L,Pei M,Dorjsuren B,Gedefaw M,Girma A,Abiyu A

更新日期：2019-10-22 00:00:00

abstract：:Rett syndrome (RTT) is a rare neurological disorder mostly caused by a genetic variation in MECP2. Making new MECP2 variants and the related phenotypes available provides data for better understanding of disease mechanisms and faster identification of variants for diagnosis. This is, however, currently hampered by the...

journal_title：Scientific data

authors： Ehrhart F,Jacobsen A,Rigau M,Bosio M,Kaliyaperumal R,Laros JFJ,Willighagen EL,Valencia A,Roos M,Capella-Gutierrez S,Curfs LMG,Evelo CT

更新日期：2021-01-15 00:00:00

abstract：:Brain atlases that encompass detailed anatomical or physiological features are instrumental in the research and surgical planning of various neurological conditions. Magnetic resonance imaging (MRI) has played important roles in neuro-image analysis while histological data remain crucial as a gold standard to guide an...

journal_title：Scientific data

authors： Xiao Y,Lau JC,Anderson T,DeKraker J,Collins DL,Peters T,Khan AR

更新日期：2019-10-17 00:00:00

abstract：:Size-resolved aerosol samples were collected in Metro Manila between July 2018 and October 2019. Two Micro-Orifice Uniform Deposit Impactors (MOUDI) were deployed at Manila Observatory in Quezon City, Metro Manila with samples collected on a weekly basis for water-soluble speciation and mass quantification. Additional...

journal_title：Scientific data

authors： Stahl C,Cruz MT,Bañaga PA,Betito G,Braun RA,Aghdam MA,Cambaliza MO,Lorenzo GR,MacDonald AB,Pabroa PC,Yee JR,Simpas JB,Sorooshian A

更新日期：2020-04-29 00:00:00

abstract：:We present an ultra-high resolution MRI dataset of an ex vivo human brain specimen. The brain specimen was donated by a 58-year-old woman who had no history of neurological disease and died of non-neurological causes. After fixation in 10% formalin, the specimen was imaged on a 7 Tesla MRI scanner at 100 µm isotropic ...

journal_title：Scientific data

authors： Edlow BL,Mareyam A,Horn A,Polimeni JR,Witzel T,Tisdall MD,Augustinack JC,Stockmann JP,Diamond BR,Stevens A,Tirrell LS,Folkerth RD,Wald LL,Fischl B,van der Kouwe A

更新日期：2019-10-30 00:00:00

abstract：:The mammalian innate immune system senses many bacterial stimuli through the toll-like receptor (TLR) family. Activation of the TLR4 receptor by bacterial lipopolysaccharide (LPS) is the most widely studied TLR pathway due to its central role in host responses to gram-negative bacterial infection and its contribution ...

journal_title：Scientific data

authors： Sun J,Katz S,Dutta B,Wang Z,Fraser ID

更新日期：2017-03-01 00:00:00

abstract：:Monitoring vegetation phenology is critical for quantifying climate change impacts on ecosystems. We present an extensive dataset of 1783 site-years of phenological data derived from PhenoCam network imagery from 393 digital cameras, situated from tropics to tundra across a wide range of plant functional types, biomes...

journal_title：Scientific data

authors： Seyednasrollah B,Young AM,Hufkens K,Milliman T,Friedl MA,Frolking S,Richardson AD

更新日期：2019-10-22 00:00:00

abstract：:Achievements of near human-level performance in object recognition by deep neural networks (DNNs) have triggered a flood of comparative studies between the brain and DNNs. Using a DNN as a proxy for hierarchical visual representations, our recent study found that human brain activity patterns measured by functional ma...

journal_title：Scientific data

authors： Horikawa T,Aoki SC,Tsukamoto M,Kamitani Y

更新日期：2019-02-12 00:00:00

abstract：:Chest radiography is an extremely powerful imaging modality, allowing for a detailed inspection of a patient's chest, but requires specialized training for proper interpretation. With the advent of high performance general purpose computer vision algorithms, the accurate automated analysis of chest radiographs is beco...

journal_title：Scientific data

authors： Johnson AEW,Pollard TJ,Berkowitz SJ,Greenbaum NR,Lungren MP,Deng CY,Mark RG,Horng S

更新日期：2019-12-12 00:00:00

abstract：:There are recent studies which aimed to detect the inheritance on the etiology of dental caries exploring oral composition. We present data on the oral microbiota and its relation with dental caries and other factors in monozygotic (MZ) and dizygotic (DZ) twin children. Following clinical investigation, DNA samples we...

journal_title：Scientific data

authors： Kasimoglu Y,Koruyucu M,Birant S,Karacan I,Topcuoglu N,Tuna EB,Gencay K,Seymen F

更新日期：2020-10-13 00:00:00

abstract：:Eicosanoids comprise a class of bioactive lipids derived from a unique group of essential fatty acids that mediate a variety of important physiological functions. Owing to the structural diversity of these lipids, their analysis in biological samples is often a major challenge. Advancements in mass spectrometric have ...

journal_title：Scientific data

authors： Sorgi CA,Peti APF,Petta T,Meirelles AFG,Fontanari C,Moraes LAB,Faccioli LH

更新日期：2018-08-21 00:00:00

abstract：:We provide a detailed description of a gadoteridol-derivatized lysozyme (gadolinium lysozyme) two-colour serial femtosecond crystallography (SFX) dataset for multiple wavelength anomalous dispersion (MAD) structure determination. The data was collected at the Spring-8 Angstrom Compact free-electron LAser (SACLA) facil...

journal_title：Scientific data

authors： Gorel A,Motomura K,Fukuzawa H,Doak RB,Grünbein ML,Hilpert M,Inoue I,Kloos M,Nass Kovács G,Nango E,Nass K,Roome CM,Shoeman RL,Tanaka R,Tono K,Foucar L,Joti Y,Yabashi M,Iwata S,Ueda K,Barends TRM,Schlichting I

更新日期：2017-12-12 00:00:00

abstract：:The silkmoth chorion was studied extensively by F.C. Kafatos' group for almost 40 years. However, the complete structure of the chorion locus was not obtained in the genome sequence of Bombyx mori published in 2008 due to repetitive sequences, resulting in gaps and an incomplete view of the locus. To obtain the comple...

journal_title：Scientific data

authors： Chen Z,Nohata J,Guo H,Li S,Liu J,Guo Y,Yamamoto K,Kadono-Okuda K,Liu C,Arunkumar KP,Nagaraju J,Zhang Y,Liu S,Labropoulou V,Swevers L,Tsitoura P,Iatrou K,Gopinathan KP,Goldsmith MR,Xia Q,Mita K

更新日期：2015-11-10 00:00:00

abstract：:In angiogenesis with concurrent inflammation, many pathways are activated, some linked to VEGF and others largely VEGF-independent. Pathways involving inflammatory mediators, chemokines, and micro-RNAs may play important roles in maintaining a pro-angiogenic environment or mediating angiogenic regression. Here, we des...

journal_title：Scientific data

authors： Mukwaya A,Lindvall JM,Xeroudaki M,Peebo B,Ali Z,Lennikov A,Jensen LD,Lagali N

更新日期：2016-11-22 00:00:00

abstract：:Functional trait databases are emerging as crucial tools for a wide range of ecological studies across the world. Here, we provide a database of functional traits for vascular plant species of the Mediterranean Basin. The database includes 25,764 individual records of 44 traits from 2,457 plant taxa distributed in 119...

journal_title：Scientific data

authors： Tavşanoğlu Ç,Pausas JG

更新日期：2018-07-10 00:00:00

abstract：:Gammarids are amphipods found worldwide distributed in fresh and marine waters. They play an important role in aquatic ecosystems and are well established sentinel species in ecotoxicology. In this study, we sequenced the transcriptomes of a male individual and a female individual for seven different taxonomic groups ...

journal_title：Scientific data

authors： Cogne Y,Degli-Esposti D,Pible O,Gouveia D,François A,Bouchez O,Eché C,Ford A,Geffard O,Armengaud J,Chaumot A,Almunia C

更新日期：2019-09-27 00:00:00

abstract：:With the aim to uncover the molecular pathways underlying the regulation of sleep, we recently assembled an extensive and comprehensive systems genetics dataset interrogating a genetic reference population of mice at the levels of the genome, the brain and liver transcriptomes, the plasma metabolome, and the sleep-wak...

journal_title：Scientific data

authors： Jan M,Gobet N,Diessler S,Franken P,Xenarios I

更新日期：2019-10-31 00:00:00

abstract：:Gait analysis has traditionally relied on laborious and lab-based methods. Data from wearable sensors, such as Inertial Measurement Units (IMU), can be analyzed with machine learning to perform gait analysis in real-world environments. This database provides data from thirty participants (fifteen males and fifteen fem...

journal_title：Scientific data

authors： Luo Y,Coppola SM,Dixon PC,Li S,Dennerlein JT,Hu B

更新日期：2020-07-08 00:00:00

abstract：:A synthesis of phenotypic and quantitative genomic traits is provided for bacteria and archaea, in the form of a scripted, reproducible workflow that standardizes and merges 26 sources. The resulting unified dataset covers 14 phenotypic traits, 5 quantitative genomic traits, and 4 environmental characteristics for app...

journal_title：Scientific data

authors： Madin JS,Nielsen DA,Brbic M,Corkrey R,Danko D,Edwards K,Engqvist MKM,Fierer N,Geoghegan JL,Gillings M,Kyrpides NC,Litchman E,Mason CE,Moore L,Nielsen SL,Paulsen IT,Price ND,Reddy TBK,Richards MA,Rocha EPC,Schmidt

更新日期：2020-06-05 00:00:00