Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica.

Abstract:

:The yeast Yarrowia lipolytica is a potent accumulator of lipids, and lipogenesis in this organism can be influenced by a variety of factors, such as genetics and environmental conditions. Using a multifactorial study, we elucidated the effects of both genetic and environmental factors on regulation of lipogenesis in Y. lipolytica and identified how two opposite regulatory states both result in lipid accumulation. This study involved comparison of a strain overexpressing diacylglycerol acyltransferase (DGA1) with a control strain grown under either nitrogen or carbon limitation conditions. A strong correlation was observed between the responses on the transcript and protein levels. Combination of DGA1 overexpression with nitrogen limitation resulted in a high level of lipid accumulation accompanied by downregulation of several amino acid biosynthetic pathways, including that of leucine in particular, and these changes were further correlated with a decrease in metabolic fluxes. This downregulation was supported by the measured decrease in the level of 2-isopropylmalate, an intermediate of leucine biosynthesis. Combining the multi-omics data with putative transcription factor binding motifs uncovered a contradictory role for TORC1 in controlling lipid accumulation, likely mediated through 2-isopropylmalate and a Leu3-like transcription factor.IMPORTANCE The ubiquitous metabolism of lipids involves refined regulation, and an enriched understanding of this regulation would have wide implications. Various factors can influence lipid metabolism, including the environment and genetics. We demonstrated, using a multi-omics and multifactorial experimental setup, that multiple factors affect lipid accumulation in the yeast Yarrowia lipolytica Using integrative analysis, we identified novel interactions between nutrient restriction and genetic factors involving regulators that are highly conserved among eukaryotes. Given that lipid metabolism is involved in many diseases but is also vital to the development of microbial cell factories that can provide us with sustainable fuels and oleochemicals, we envision that our report introduces foundational work to further unravel the regulation of lipid accumulation in eukaryal cells.

journal_name

mBio

journal_title

mBio

authors

Kerkhoven EJ,Kim YM,Wei S,Nicora CD,Fillmore TL,Purvine SO,Webb-Robertson BJ,Smith RD,Baker SE,Metz TO,Nielsen J

doi

10.1128/mBio.00857-17

subject

Has Abstract

pub_date

2017-06-20 00:00:00

issue

3

issn

2150-7511

pii

mBio.00857-17

journal_volume

8

pub_type

杂志文章

相关文献

mBio文献大全
  • Lipid Flippase Subunit Cdc50 Mediates Drug Resistance and Virulence in Cryptococcus neoformans.

    abstract:UNLABELLED:Cryptococcus neoformans is a human fungal pathogen and a major cause of fungal meningitis in immunocompromised individuals. Treatment options for cryptococcosis are limited. Of the two major antifungal drug classes, azoles are active against C. neoformans but exert a fungistatic effect, necessitating long tr...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00478-16

    authors: Huang W,Liao G,Baker GM,Wang Y,Lau R,Paderu P,Perlin DS,Xue C

    更新日期:2016-05-10 00:00:00

  • Monoassociation with Lactobacillus plantarum Disrupts Intestinal Homeostasis in Adult Drosophila melanogaster.

    abstract::Adult Drosophila melanogaster raised in the absence of symbiotic bacteria have fewer intestinal stem cell divisions and a longer life span than their conventionally reared counterparts. However, we do not know if increased stem cell divisions are essential for symbiont-dependent regulation of longevity. To determine i...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01114-18

    authors: Fast D,Duggal A,Foley E

    更新日期:2018-07-31 00:00:00

  • Kisameet Clay Exhibits Potent Antibacterial Activity against the ESKAPE Pathogens.

    abstract:UNLABELLED:The ESKAPE (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species) pathogens cause an increasing number of nosocomial infections worldwide since they escape the inhibitory effect of the available antibiotics and the immun...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01842-15

    authors: Behroozian S,Svensson SL,Davies J

    更新日期:2016-01-26 00:00:00

  • The Escherichia coli protein YfeX functions as a porphyrinogen oxidase, not a heme dechelatase.

    abstract:UNLABELLED:The protein YfeX from Escherichia coli has been proposed to be essential for the process of iron removal from heme by carrying out a dechelation of heme without cleavage of the porphyrin macrocycle. Since this proposed reaction is unique and would represent the first instance of the biological dechelation of...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00248-11

    authors: Dailey HA,Septer AN,Daugherty L,Thames D,Gerdes S,Stabb EV,Dunn AK,Dailey TA,Phillips JD

    更新日期:2011-11-08 00:00:00

  • Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter.

    abstract::The members of the OM43 clade of Betaproteobacteria are abundant coastal methylotrophs with a range of carbon-utilizing capabilities. However, their underlying transcriptional and metabolic responses to shifting conditions or different carbon substrates remain poorly understood. We examined the transcriptional dynamic...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01279-16

    authors: Gifford SM,Becker JW,Sosa OA,Repeta DJ,DeLong EF

    更新日期:2016-11-22 00:00:00

  • FtsZ-Dependent Elongation of a Coccoid Bacterium.

    abstract:UNLABELLED:A mechanistic understanding of the determination and maintenance of the simplest bacterial cell shape, a sphere, remains elusive compared with that of more complex shapes. Cocci seem to lack a dedicated elongation machinery, and a spherical shape has been considered an evolutionary dead-end morphology, as a ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00908-16

    authors: Pereira AR,Hsin J,Król E,Tavares AC,Flores P,Hoiczyk E,Ng N,Dajkovic A,Brun YV,VanNieuwenhze MS,Roemer T,Carballido-Lopez R,Scheffers DJ,Huang KC,Pinho MG

    更新日期:2016-09-06 00:00:00

  • FOSL1 Inhibits Type I Interferon Responses to Malaria and Viral Infections by Blocking TBK1 and TRAF3/TRIF Interactions.

    abstract::Innate immune response plays a critical role in controlling invading pathogens, but such an immune response must be tightly regulated. Insufficient or overactivated immune responses may lead to harmful or even fatal consequences. To dissect the complex host-parasite interactions and the molecular mechanisms underlying...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02161-16

    authors: Cai B,Wu J,Yu X,Su XZ,Wang RF

    更新日期:2017-01-03 00:00:00

  • Tol-Pal System and Rgs Proteins Interact to Promote Unipolar Growth and Cell Division in Sinorhizobium meliloti.

    abstract::Sinorhizobium meliloti is an alphaproteobacterium belonging to the Rhizobiales Bacteria from this order elongate their cell wall at the new cell pole, generated by cell division. Screening for protein interaction partners of the previously characterized polar growth factors RgsP and RgsM, we identified the inner membr...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00306-20

    authors: Krol E,Yau HCL,Lechner M,Schäper S,Bange G,Vollmer W,Becker A

    更新日期:2020-06-30 00:00:00

  • A Functional Polymorphism-Mediated Disruption of EGR1/ADAM10 Pathway Confers the Risk of Sepsis Progression.

    abstract::Increasing evidence has indicated that single nucleotide polymorphisms (SNPs) are related to the susceptibility of sepsis and might provide potential evidence for the mechanisms of sepsis. Our recent preliminary study showed that the ADAM10 genetic polymorphism was clinically associated with the development of sepsis,...

    journal_title:mBio

    pub_type: 杂志文章,多中心研究

    doi:10.1128/mBio.01663-19

    authors: Chen F,Wang Y,Zhang W,Cai Y,Zhao T,Mai H,Tao S,Wei W,Li J,Chen X,Li X,Tang P,Fan W,Yang J,Ou M,Lu F,Lai Z,Chen H,Zou T,Sun F,Shao Y,Cui L

    更新日期:2019-08-06 00:00:00

  • Offloading Role of a Discrete Thioesterase in Type II Polyketide Biosynthesis.

    abstract::Type II polyketides are a group of secondary metabolites with various biological activities. In nature, biosynthesis of type II polyketides involves multiple enzymatic steps whereby key enzymes, including ketoacyl-synthase (KSα), chain length factor (KSβ), and acyl carrier protein (ACP), are utilized to elongate the p...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01334-20

    authors: Hua K,Liu X,Zhao Y,Gao Y,Pan L,Zhang H,Deng Z,Jiang M

    更新日期:2020-09-15 00:00:00

  • Characterization of an M-Cluster-Substituted Nitrogenase VFe Protein.

    abstract::The Mo- and V-nitrogenases are two homologous members of the nitrogenase family that are distinguished mainly by the presence of different heterometals (Mo or V) at their respective cofactor sites (M- or V-cluster). However, the V-nitrogenase is ~600-fold more active than its Mo counterpart in reducing CO to hydrocarb...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00310-18

    authors: Rebelein JG,Lee CC,Newcomb M,Hu Y,Ribbe MW

    更新日期:2018-03-13 00:00:00

  • Bat Caliciviruses and Human Noroviruses Are Antigenically Similar and Have Overlapping Histo-Blood Group Antigen Binding Profiles.

    abstract::Emerging zoonotic viral diseases remain a challenge to global public health. Recent surveillance studies have implicated bats as potential reservoirs for a number of viral pathogens, including coronaviruses and Ebola viruses. Caliciviridae represent a major viral family contributing to emerging diseases in both human ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00869-18

    authors: Kocher JF,Lindesmith LC,Debbink K,Beall A,Mallory ML,Yount BL,Graham RL,Huynh J,Gates JE,Donaldson EF,Baric RS

    更新日期:2018-05-22 00:00:00

  • Evolutionary Stabilization of Cooperative Toxin Production through a Bacterium-Plasmid-Phage Interplay.

    abstract::Colicins are toxins produced and released by Enterobacteriaceae to kill competitors in the gut. While group A colicins employ a division of labor strategy to liberate the toxin into the environment via colicin-specific lysis, group B colicin systems lack cognate lysis genes. In Salmonella enterica serovar Typhimurium ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00912-20

    authors: Spriewald S,Stadler E,Hense BA,Münch PC,McHardy AC,Weiss AS,Obeng N,Müller J,Stecher B

    更新日期:2020-07-21 00:00:00

  • Signature Arsenic Detoxification Pathways in Halomonas sp. Strain GFAJ-1.

    abstract::Since the original report that Halomonas sp. strain GFAJ-1 was capable of using arsenic instead of phosphorus to sustain growth, additional studies have been conducted, and GFAJ-1 is now considered a highly arsenic-resistant but phosphorus-dependent bacterium. However, the mechanisms supporting the extreme arsenic res...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00515-18

    authors: Wu S,Wang L,Gan R,Tong T,Bian H,Li Z,Du S,Deng Z,Chen S

    更新日期:2018-05-01 00:00:00

  • Inhibition of the ATP Synthase Eliminates the Intrinsic Resistance of Staphylococcus aureus towards Polymyxins.

    abstract::Staphylococcus aureus is intrinsically resistant to polymyxins (polymyxin B and colistin), an important class of cationic antimicrobial peptides used in treatment of Gram-negative bacterial infections. To understand the mechanisms underlying intrinsic polymyxin resistance in S. aureus, we screened the Nebraska Transpo...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01114-17

    authors: Vestergaard M,Nøhr-Meldgaard K,Bojer MS,Krogsgård Nielsen C,Meyer RL,Slavetinsky C,Peschel A,Ingmer H

    更新日期:2017-09-05 00:00:00

  • Minimal Elements Required for the Formation of Respiratory Syncytial Virus Cytoplasmic Inclusion Bodies In Vivo and In Vitro.

    abstract::Infection of host cells by the respiratory syncytial virus (RSV) is characterized by the formation of spherical cytoplasmic inclusion bodies (IBs). These structures, which concentrate all the proteins of the polymerase complex as well as some cellular proteins, were initially considered aggresomes formed by viral dead...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01202-20

    authors: Galloux M,Risso-Ballester J,Richard CA,Fix J,Rameix-Welti MA,Eléouët JF

    更新日期:2020-09-22 00:00:00

  • Laccase Affects the Rate of Cryptococcus neoformans Nonlytic Exocytosis from Macrophages.

    abstract::Nonlytic exocytosis is a process in which previously ingested microbes are expelled from host phagocytes with the concomitant survival of both cell types. This process has been observed in the interaction of Cryptococcus spp. and other fungal cells with phagocytes as distant as mammalian, bird, and fish macrophages an...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02085-20

    authors: Frazão SO,Sousa HR,Silva LGD,Folha JDS,Gorgonha KCM,Oliveira GP Jr,Felipe MSS,Silva-Pereira I,Casadevall A,Nicola AM,Albuquerque P

    更新日期:2020-09-08 00:00:00

  • Competition in Biofilms between Cystic Fibrosis Isolates of Pseudomonas aeruginosa Is Shaped by R-Pyocins.

    abstract::Pseudomonas aeruginosa is an opportunistic pathogen and the leading cause of morbidity and mortality in cystic fibrosis (CF) patients. P. aeruginosa infections are difficult to treat due to a number of antibiotic resistance mechanisms and the organism's propensity to form multicellular biofilms. Epidemic strains of P....

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01828-18

    authors: Oluyombo O,Penfold CN,Diggle SP

    更新日期:2019-01-29 00:00:00

  • Dietary pyridoxine controls efficacy of vitamin B6-auxotrophic tuberculosis vaccine bacillus Calmette-Guérin ΔureC::hly Δpdx1 in mice.

    abstract:UNLABELLED:The only tuberculosis (TB) vaccine in use today, bacillus Calmette-Guérin (BCG), provides insufficient protection and can cause adverse events in immunocompromised individuals, such as BCGosis in HIV(+) newborns. We previously reported improved preclinical efficacy and safety of the recombinant vaccine candi...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01262-14

    authors: Gengenbacher M,Vogelzang A,Schuerer S,Lazar D,Kaiser P,Kaufmann SH

    更新日期:2014-06-03 00:00:00

  • Bioluminescence resonance energy transfer system for measuring dynamic protein-protein interactions in bacteria.

    abstract:UNLABELLED:Protein-protein interactions are important for virtually every biological process, and a number of elegant approaches have been designed to detect and evaluate such interactions. However, few of these methods allow the detection of dynamic and real-time protein-protein interactions in bacteria. Here we descr...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01050-14

    authors: Cui B,Wang Y,Song Y,Wang T,Li C,Wei Y,Luo ZQ,Shen X

    更新日期:2014-05-20 00:00:00

  • Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates.

    abstract:UNLABELLED:Investigation of the human microbiome has revealed diverse and complex microbial communities at distinct anatomic sites. The microbiome of the human sebaceous follicle provides a tractable model in which to study its dominant bacterial inhabitant, Propionibacterium acnes, which is thought to contribute to th...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00279-12

    authors: Marinelli LJ,Fitz-Gibbon S,Hayes C,Bowman C,Inkeles M,Loncaric A,Russell DA,Jacobs-Sera D,Cokus S,Pellegrini M,Kim J,Miller JF,Hatfull GF,Modlin RL

    更新日期:2012-09-25 00:00:00

  • Pandemic COVID-19 Joins History's Pandemic Legion.

    abstract::With great apprehension, the world is now watching the birth of a novel pandemic already causing tremendous suffering, death, and disruption of normal life. Uncertainty and dread are exacerbated by the belief that what we are experiencing is new and mysterious. However, deadly pandemics and disease emergences are not ...

    journal_title:mBio

    pub_type: 历史文章,杂志文章,评审

    doi:10.1128/mBio.00812-20

    authors: Morens DM,Daszak P,Markel H,Taubenberger JK

    更新日期:2020-05-29 00:00:00

  • Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments.

    abstract::Unlike all other archaeal lineages, ammonia-oxidizing archaea (AOA) of the phylum Thaumarchaeota are widespread and abundant in all moderate and oxic environments on Earth. The evolutionary adaptations that led to such unprecedented ecological success of a microbial clade characterized by highly conserved energy and c...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02371-20

    authors: Abby SS,Kerou M,Schleper C

    更新日期:2020-10-13 00:00:00

  • Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii.

    abstract::The pathogenic species of Cryptococcus are a major cause of mortality owing to severe infections in immunocompromised as well as immunocompetent individuals. Although antifungal treatment is usually effective, many patients relapse after treatment, and in such cases, comparative analyses of the genomes of incident and...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00166-17

    authors: Chen Y,Farrer RA,Giamberardino C,Sakthikumar S,Jones A,Yang T,Tenor JL,Wagih O,Van Wyk M,Govender NP,Mitchell TG,Litvintseva AP,Cuomo CA,Perfect JR

    更新日期:2017-03-07 00:00:00

  • The ESCRT-Related ATPase Vps4 Is Modulated by Interferon during Herpes Simplex Virus 1 Infection.

    abstract::Interferons (IFNs) and autophagy are critical neuronal defenses against viral infection. IFNs alter neuronal autophagy by promoting the accumulation of IFN-dependent LC3-decorated autophagic structures, termed LC3 clusters. Here, we analyzed LC3 clusters in sensory ganglia following herpes simplex virus 1 (HSV-1) infe...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02567-18

    authors: Cabrera JR,Manivanh R,North BJ,Leib DA

    更新日期:2019-03-05 00:00:00

  • Structural and mechanistic roles of novel chemical ligands on the SdiA quorum-sensing transcription regulator.

    abstract:UNLABELLED:Bacteria engage in chemical signaling, termed quorum sensing (QS), to mediate intercellular communication, mimicking multicellular organisms. The LuxR family of QS transcription factors regulates gene expression, coordinating population behavior by sensing endogenous acyl homoserine lactones (AHLs). However,...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02429-14

    authors: Nguyen Y,Nguyen NX,Rogers JL,Liao J,MacMillan JB,Jiang Y,Sperandio V

    更新日期:2015-03-31 00:00:00

  • Pseudomonas aeruginosa Leucine Aminopeptidase Influences Early Biofilm Composition and Structure via Vesicle-Associated Antibiofilm Activity.

    abstract::Pseudomonas aeruginosa, known as one of the leading causes of disease in cystic fibrosis (CF) patients, secretes a variety of proteases. These enzymes contribute significantly to P. aeruginosa pathogenesis and biofilm formation in the chronic colonization of CF patient lungs, as well as playing a role in infections of...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02548-19

    authors: Esoda CN,Kuehn MJ

    更新日期:2019-11-19 00:00:00

  • Structural and functional features of a developmentally regulated lipopolysaccharide-binding protein.

    abstract:UNLABELLED:Mammalian lipopolysaccharide (LPS) binding proteins (LBPs) occur mainly in extracellular fluids and promote LPS delivery to specific host cell receptors. The function of LBPs has been studied principally in the context of host defense; the possible role of LBPs in nonpathogenic host-microbe interactions has ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01193-15

    authors: Krasity BC,Troll JV,Lehnert EM,Hackett KT,Dillard JP,Apicella MA,Goldman WE,Weiss JP,McFall-Ngai MJ

    更新日期:2015-10-13 00:00:00

  • Antibiotics in feed induce prophages in swine fecal microbiomes.

    abstract:UNLABELLED:Antibiotics are a cost-effective tool for improving feed efficiency and preventing disease in agricultural animals, but the full scope of their collateral effects is not understood. Antibiotics have been shown to mediate gene transfer by inducing prophages in certain bacterial strains; therefore, one collate...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00260-11

    authors: Allen HK,Looft T,Bayles DO,Humphrey S,Levine UY,Alt D,Stanton TB

    更新日期:2011-11-29 00:00:00

  • Oral Administration of Astrovirus Capsid Protein Is Sufficient To Induce Acute Diarrhea In Vivo.

    abstract::The disease mechanisms associated with the onset of astrovirus diarrhea are unknown. Unlike other enteric virus infections, astrovirus infection is not associated with an inflammatory response or cellular damage. In vitro studies in differentiated Caco-2 cells demonstrated that human astrovirus serotype 1 (HAstV-1) ca...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01494-16

    authors: Meliopoulos VA,Marvin SA,Freiden P,Moser LA,Nighot P,Ali R,Blikslager A,Reddivari M,Heath RJ,Koci MD,Schultz-Cherry S

    更新日期:2016-11-01 00:00:00