QTLs and analysis of the candidate gene for amylose, protein, and moisture content in rice (Oryza sativa L.).

Abstract:

:In this study, we determined using NIRS the heritability percentage of amylose, protein, and moisture content in polished and unpolished rice in a CNDH population derived from a cross between Cheongcheong and Nagdong rice varieties. The results revealed a higher heritability percentage for the amylose content and compromised heritability for protein and moisture contents. We also conducted QTL analysis of rice for these major components and identified their chromosomal locations on a physical map. We found a total of four QTLs affecting the amylose, protein, and moisture contents of grain on chromosome 7. We constructed physical maps of seven DNA markers responsible for amylose content, six responsible for protein content, and three responsible for moisture content. Furthermore, we classified these genes according to their functions and found 17 genes (over 77%) to be involved in secondary metabolite synthesis, two genes (about 9%), each related to cell function and abiotic stress, and one gene (about 5%) involved in redox signaling.

journal_name

3 Biotech

journal_title

3 Biotech

authors

Bruno E,Choi YS,Chung IK,Kim KM

doi

10.1007/s13205-017-0687-8

subject

Has Abstract

pub_date

2017-05-01 00:00:00

pages

40

issue

1

eissn

2190-572X

issn

2190-5738

pii

10.1007/s13205-017-0687-8

journal_volume

7

pub_type

杂志文章
  • Mechanisms underlying the wound healing and tissue regeneration properties of Chenopodium album.

    abstract::In the current study, aerial parts (leaves, stem and shoots) of C. album were extracted with methanol and subjected to phytochemical and HPLC analysis. Agar well diffusion method was used for anti-bacterial activity against Gram-negative strains Escherichia coli, Salmonella typhi, Klebsiella, Pseudomonas aeruginosa an...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02436-6

    authors: Said A,Naeem N,Siraj S,Khan T,Javed A,Rasheed HM,Sajjad W,Shah K,Wahid F

    更新日期:2020-10-01 00:00:00

  • MERS-CoV papain-like protease (PLpro): expression, purification, and spectroscopic/thermodynamic characterization.

    abstract::Within a decade, MERS-CoV emerged with nearly four times higher case fatality rate than an earlier outbreak of SARS-CoV and spread out in 27 countries in short span of time. As an emerging virus, combating it requires an in-depth understanding of its molecular machinery. Therefore, conformational characterization stud...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0744-3

    authors: Malik A,Alsenaidy MA

    更新日期:2017-06-01 00:00:00

  • New insights into the role of nanotechnology in microbial food safety.

    abstract::Today, the role of nanotechnology in human life is undeniable as a broad range of industries, particularly food and medicine sectors, have been dramatically influenced. Nanomaterials can contribute to food safety by forming new nano-sized ingredients with modified physicochemical characteristics. Nanotechnologies can ...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-020-02409-9

    authors: Rahmati F,Hosseini SS,Mahuti Safai S,Asgari Lajayer B,Hatami M

    更新日期:2020-10-01 00:00:00

  • Polymorphisms in 5' proximal regulating region of THRSP gene are associated with fat production in pigs.

    abstract::Chinese and imported pig breeds differ in fat production potential, which is associated with the polymorphisms in the 5' proximal regulating region (5'PRR) of thyroid hormone responsive gene (THRSP). In three Chinese breeds (Dingyuan, CDY; Wannanhua, CWH; and Jixi, CJX) and one introduced breed (Yorkshire, YKS), three...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02266-6

    authors: Wang X,Cheng J,Qin W,Chen H,Chen G,Shang X,Zhang M,Balsai N,Chen H

    更新日期:2020-06-01 00:00:00

  • Remarkable stability of an instability-prone lentiviral vector plasmid in Escherichia coli Stbl3.

    abstract::Large-scale production of plasmid DNA to prepare therapeutic gene vectors or DNA-based vaccines requires a suitable bacterial host, which can stably maintain the plasmid DNA during industrial cultivation. Plasmid loss during bacterial cell divisions and structural changes in the plasmid DNA can dramatically reduce the...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-012-0070-8

    authors: Al-Allaf FA,Tolmachov OE,Zambetti LP,Tchetchelnitski V,Mehmet H

    更新日期:2013-02-01 00:00:00

  • Banana bunchy top virus (BBTV) nuclear shuttle protein interacts and re-distributes BBTV coat protein in Nicotiana benthamiana.

    abstract::Banana bunchy top virus (BBTV) is a circular single-stranded DNA virus with multi-components. The knowledge about interaction between viral proteins and pathogenesis mechanism of BBTV remains unclear. In this study, the coat protein gene (CP, ORF 516 bp) and nuclear shuttle protein gene (NSP, ORF 465 bp) from BBTV B2 ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1656-1

    authors: Ji XL,Yu NT,Qu L,Li BB,Liu ZX

    更新日期:2019-04-01 00:00:00

  • Curcumin-loaded, alginate-gelatin composite fibers for wound healing applications.

    abstract::The wound healing process is characterized by varied biological and molecular cascades including inflammation, tissue proliferation, and remodeling phase. To augment and maintain these cascades, an all-natural matrix system is proposed. Biocompatible biopolymers, sodium alginate and gelatin, were employed to prepare m...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02453-5

    authors: Sharma A,Mittal A,Puri V,Kumar P,Singh I

    更新日期:2020-11-01 00:00:00

  • Evaluation of indigenous Trichoderma isolates from Manipur as biocontrol agent against Pythium aphanidermatum on common beans.

    abstract::Pythium aphanidermatum is one of the common causal pathogen of damping-off disease of beans (Phaseolus vulgaris L.) grown in Manipur. A total of 110 indigenous Trichoderma isolates obtained from North east India were screened for their biocontrol activity which can inhibit the mycelial growth of P. aphanidermatum, the...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-011-0027-3

    authors: Kamala T,Indira S

    更新日期:2011-12-01 00:00:00

  • Complete genome and plasmid sequence of a novel Bacillus sp. BD59S, a parasporal protein synthesizing bacterium.

    abstract::Parasporal crystalline inclusion proteins of some Bacillus spp. are of paramount importance due to their insecticidal, nematocidal, and cancer cell killing capabilities. Here, we present a brief report of the complete genome sequence of Bacillus sp. BD59S, a bacterium that produced HeLa cell-killing parasporal crystal...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-019-1849-7

    authors: Hasan MM,Khan SN,Karim MM,Begum A,Hoq MM

    更新日期:2019-09-01 00:00:00

  • Cloning and expression analysis of tps, and cryopreservation research of trehalose from Antarctic strain Pseudozyma sp.

    abstract::Trehalose is a non-reducing disaccharide sugar that widely exists in a variety of organisms, such as bacteria and eukaryotes except the vertebrates. It plays an important role in a number of critical metabolic functions especially in response to stressful environmental conditions. However, the biosynthetic pathways of...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0983-3

    authors: Yin H,Wang Y,He Y,Xing L,Zhang X,Wang S,Qi X,Zheng Z,Lu J,Miao J

    更新日期:2017-10-01 00:00:00

  • Differential expression of anthocyanin structural genes and transcription factors determines coloration patterns in gerbera flowers.

    abstract::We investigated the expression of anthocyanin structural genes and transcription factors (TFs) associated with varying anthocyanin content during different developmental stages (S1-S4) of the gerbera cultivars 'Nathasha' and 'Rosalin'. Accumulation of anthocyanin started at S1 and reached a maximum at S3 in both culti...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-018-1408-7

    authors: Naing AH,Park DY,Park KI,Kim CK

    更新日期:2018-09-01 00:00:00

  • Agricultural residues for cellulolytic enzyme production by Aspergillus niger: effects of pretreatment.

    abstract::Different agricultural residues were considered in this study for their ability to support cellulolytic enzyme production by Aspergillus niger. A total of eleven agricultural residues including finger millet hulls, sorghum hulls, soybean hulls, groundnut husk, banana peels, corn stalk, cassava peels, sugarcane bagasse...

    journal_title:3 Biotech

    pub_type:

    doi:10.1007/s13205-015-0294-5

    authors: Salihu A,Abbas O,Sallau AB,Alam MZ

    更新日期:2015-12-01 00:00:00

  • Phyto-synthesis and structural characterization of catalytically active gold nanoparticles biosynthesized using Delonix regia leaf extract.

    abstract::Biological methods of nanoparticles synthesis are ecologically sound and sustainable alternative to the conventional methods. On the basis of aforesaid premise, the present study deals with the optimization and fabrication of gold nanoparticles (Au-NPs) using easily available bio-resource, Delonix regia leaf extract. ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0432-8

    authors: Dauthal P,Mukhopadhyay M

    更新日期:2016-12-01 00:00:00

  • Dark fermentation effluent as substrate for hydrogen production from Rhodobacter capsulatus highlighting the performance of different fermentation systems.

    abstract::Hydrogen production by biological route is a potentially sustainable alternative. Nowadays, energy production from sustainable sources has become urgent for several countries as well as for international policies. In this perspective, hydrogen has gained substantial global attention as clean, sustainable, and versatil...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1676-x

    authors: Silva FTM,Bessa LP,Vieira LM,Moreira FS,de Souza Ferreira J,Batista FRX,Cardoso VL

    更新日期:2019-04-01 00:00:00

  • Genetic diversity among some canola cultivars as revealed by RAPD, SSR and AFLP analyses.

    abstract::To assess the genetic diversity among four canola cultivars (namely, Serw-3, Serw-4, Misser L-16 and Semu 249), random amplified polymorphic DNA (RAPD), simple sequence repeat polymorphism (SSR) and amplified fragment length polymorphism (AFLP) analyses were performed. The data indicated that all of the three molecula...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-013-0165-x

    authors: Moghaieb RE,Mohammed EH,Youssief SS

    更新日期:2014-08-01 00:00:00

  • Human leukocyte antigen (HLA-F) polymorphism is associated with chronic HBV infection.

    abstract::Human leukocyte antigen (HLA)-F has been involved in immune regulation of infectious diseases. However, the role of HLA-F polymorphisms in hepatitis B infection outcomes remains unclear. Here, we aimed to determine HLA-F polymorphism implication in chronic HBV. Genotype analysis was performed for three single nucleoti...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-1079-9

    authors: Laaribi AB,Hannachi N,Ben Yahia H,Marzouk M,Mehri A,Belhadj M,Yacoub S,Letaief A,Ouzari HI,Boudabous A,Boukadida J,Rizzo R,Zidi I

    更新日期:2018-01-01 00:00:00

  • Pectin from muskmelon (Cucumis melo var. reticulatus) peels: extraction optimization and physicochemical properties.

    abstract::Pectin derived from plant waste sources is currently focused as an economical and eco-friendly approach. Optimization of pectin extraction from muskmelon peel by response surface methodology (RSM) was investigated in this study. Box-Behnken Design (BBD) was used to identify the optimal level of the extraction variable...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0655-3

    authors: Muthukumaran C,Banupriya L,Harinee S,Sivaranjani S,Sharmila G,Rajasekar V,Kumar NM

    更新日期:2017-05-01 00:00:00

  • Shotgun label-free proteomic and biochemical study of somatic embryos (cotyledonary and maturation stage) in Catharanthus roseus (L.) G. Don.

    abstract::Somatic embryogenesis is an important and wonderful biotechnological tool used to develop whole plant from a single or a group of somatic cells. The differentiated somatic cells become totipotent stem cells by drastic reprogramming of a wide range of cellular activities, leading to the acquisition of embryogenic compe...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-021-02649-3

    authors: Gulzar B,Mujib A,Rajam MV,Zafar N,Mamgain J,Malik M,Syeed R,Ejaz B

    更新日期:2021-02-01 00:00:00

  • Plant stem cells and their applications: special emphasis on their marketed products.

    abstract::Stem cells are becoming increasingly popular in public lexicon owing to their prospective applications in the biomedical and therapeutic domains. Extensive research has found various independent stem cell systems fulfilling specific needs of plant development. Plant stem cells are innately undifferentiated cells prese...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-020-02247-9

    authors: Aggarwal S,Sardana C,Ozturk M,Sarwat M

    更新日期:2020-07-01 00:00:00

  • Aggressiveness and molecular characterization of Fusarium spp. associated with foot rot and wilt in Tomato in Sinaloa, Mexico.

    abstract::Fusarium wilt is one of the main limiting factors for tomato production in Mexico. One thousand and fifty isolates were obtained from vascular tissues tomato plants showing wilt and yellowing symptoms in Sinaloa, Mexico. The pathogenic isolates were evaluated through phylogenetic analysis of the TEF-1α gene and ITS re...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1808-3

    authors: Vega-Gutiérrez TA,López-Urquídez GA,Allende-Molar R,Amarillas-Bueno LA,Romero-Gómez SJ,López-Orona CA

    更新日期:2019-07-01 00:00:00

  • Involvement of exogenous polyamines enhances regeneration and Agrobacterium-mediated genetic transformation in half-seeds of soybean.

    abstract::The present work demonstrates the participation of polyamines (PAs) to improve direct regeneration and Agrobacterium-mediated transformation in soybean half-seeds. The inclusion of PAs to culture medium along with optimal plant growth regulators (PGRs) enhanced shoot induction [98.3 %; 4.44 µM N6-benzyladenine (BA) an...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0448-0

    authors: Arun M,Chinnathambi A,Subramanyam K,Karthik S,Sivanandhan G,Theboral J,Alharbi SA,Kim CK,Ganapathi A

    更新日期:2016-12-01 00:00:00

  • Purification and characterization of a newly serine protease inhibitor from Rhamnus frangula with potential for use as therapeutic drug.

    abstract::Protease inhibitors from plants are well known to be potent inhibitors of the growth of bacteria, fungi, and even certain viruses which make them excellent candidates for use as the lead compounds for the development of novel antimicrobial agents for applications in medicine. In this study, Rhamnus frangula was select...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0764-z

    authors: Bacha AB,Jemel I,Moubayed NMS,Abdelmalek IB

    更新日期:2017-06-01 00:00:00

  • Antifungal, plant growth-promoting, and mycotoxin detoxication activities of Burkholderia sp. strain XHY-12.

    abstract::A bacterial strain named XHY-12 was isolated from corn soil samples and identified as Burkholderia sp. based on 16S rDNA sequencing, it displayed high antagonistic activity against 12 fungal pathogens and the common fungal contaminant in grain Aspergillus flavus. Plate experiment showed that XHY-12 fermentation broth ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-2112-y

    authors: Yang X,Chen X,Song Z,Zhang X,Zhang J,Mei S

    更新日期:2020-04-01 00:00:00

  • Progress toward sourcing plants for new bioconjugation tools: a screening evaluation of a model peptide ligase using a synthetic precursor.

    abstract::In the present study, leaves from 39 phylogenetically distant plant species were sampled and screened for asparaginyl endopeptidase ligase activity using mass spectrometry to test the generality of peptide ligases in plants. A modified version of the sunflower trypsin inhibitor-1 precursor was used as the substrate fo...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1983-2

    authors: Mahatmanto T,Azizah I,Buchberger A,Stephanopoulos N

    更新日期:2019-12-01 00:00:00

  • Enhanced production of berberine in In vitro regenerated cell of Tinospora cordifolia and its analysis through LCMS QToF.

    abstract::Tinospora cordifolia is a prioritized medicinal plant and having an immense medicinal importance especially in Indian medicinal system. But this plant needs a regeneration protocol for its rapid propagation. An efficient regeneration protocol was developed for T. cordifolia using nodal explants. High frequency of mult...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-016-0592-6

    authors: Mittal J,Sharma MM

    更新日期:2017-05-01 00:00:00

  • Antioxidant properties and polyphenolic content in terrestrial cyanobacteria.

    abstract::Cell-free extracts of twenty terrestrial cyanobacteria were evaluated for their antioxidant properties in terms of free-radical scavenging (DPPH and ABTS) and metal chelating activity and deoxyribose protection. Extract of Anabaena constricta was the most prominent antioxidant agent (IC50 for DPPH activity 0.91 mg ml-...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-017-0786-6

    authors: Singh DP,Prabha R,Verma S,Meena KK,Yandigeri M

    更新日期:2017-06-01 00:00:00

  • Evaluation of immuno-modulating effect of recombinant heat shock protein 40 of Brucella abortus in mice.

    abstract::The present study was aimed to evaluate the immuno-modulatory effect of Brucella-specific recombinant HSP40 (rDnaJ) when co-immunized with Brucella rOmp22 in mice. For this, dnaJ of Brucella abortus was cloned, expressed in E. coli, and purified to homogeneity using Ni-NTA agarose columns. Three groups of mice (n = 6 ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1905-3

    authors: Minhas P,Sunil Kumar BV,Verma R

    更新日期:2019-10-01 00:00:00

  • Fish trypsins: potential applications in biomedicine and prospects for production.

    abstract::In fishes, trypsins are adapted to different environmental conditions, and the biochemical and kinetic properties of a broad variety of native isoforms have been studied. Proteolytic enzymes remain in high demand in the detergent, food, and feed industries; however, our analysis of the literature showed that, in the l...

    journal_title:3 Biotech

    pub_type: 杂志文章,评审

    doi:10.1007/s13205-018-1208-0

    authors: Jesús-de la Cruz K,Álvarez-González CA,Peña E,Morales-Contreras JA,Ávila-Fernández Á

    更新日期:2018-04-01 00:00:00

  • Genetic diversity and population structure of watermelon (Citrullus sp.) genotypes.

    abstract::Genetic polymorphism amid plant species is a crucial factor for plant improvement and maintaining their biodiversity. Evaluation of genetic diversity amongst plant species is significant to deal with the environmental stress conditions and their effective involvement in the breeding programs. Hence, in present study, ...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-019-1736-2

    authors: Pandey A,Khan MK,Isik R,Turkmen O,Acar R,Seymen M,Hakki EE

    更新日期:2019-06-01 00:00:00

  • A novel, simple, and stable mesoporous silica nanoparticle-based gene transformation approach in Solanum lycopersicum.

    abstract::In this study, a novel and stable gene transformation system was developed under control of Maize Proteinase Inhibitor (MPI) as an inducible promoter using the Mesoporous Silica Nanoparticles (MSNs). The functionalized MSNs with a proper particle size were synthesized and attached to a recombinant construct (pDNA) con...

    journal_title:3 Biotech

    pub_type: 杂志文章

    doi:10.1007/s13205-020-02359-2

    authors: Hajiahmadi Z,Shirzadian-Khorramabad R,Kazemzad M,Sohani MM,Khajehali J

    更新日期:2020-08-01 00:00:00