Genome-wide profiling of long non-coding RNA expression patterns in anthracycline-resistant breast cancer cells.

Abstract:

:Long non-coding RNAs (lncRNAs) are involved in cancer progression. In the present study, we analyzed the lncRNA profiles in adriamycin-resistant and -sensitive breast cancer cells and found a group of dysregulated lncRNAs in the adriamycin-resistant cells. Expression of the dysregulated lncRNAs was correlated with dysregulated mRNAs, and these were enriched in GO and KEGG pathways associated with cancer progression and chemoresistance development. Among these lncRNA-mRNA interactions, some lncRNAs may cis‑regulate neighboring protein-coding genes and be involved in chemoresistance. We then validated that the lncRNA NONHSAT028712 regulated nearby CDK2 and interfered with the cell cycle and chemoresistance. Furthermore, we identified another group of lncRNAs that trans-regulated genes by interacting with different transcription factors. For example, NONHSAT057282 and NONHSAG023333 modulated chemoresistance and most likely interacted with the transcription factors ELF1 and E2F1, respectively. In conclusion, in the present study, we report for the first time the lncRNA expression patterns in adriamycin-resistant breast cancer cells, and provide a group of novel lncRNA targets that mediate chemoresistance development in both cis- and trans-action modes.

journal_name

Int J Oncol

authors

He DX,Zhang GY,Gu XT,Mao AQ,Lu CX,Jin J,Liu DQ,Ma X

doi

10.3892/ijo.2016.3665

subject

Has Abstract

pub_date

2016-10-01 00:00:00

pages

1695-1703

issue

4

eissn

1019-6439

issn

1791-2423

journal_volume

49

pub_type

杂志文章
  • alpha6 integrin expression in esophageal carcinoma.

    abstract::One of the genes that the authors have isolated by a differential display of hepatocellular carcinoma compared to adjacent liver is the alpha6 integrin. alpha6 integrin is the major adhesion receptor for laminin and is suggested to be involved in tumor cell invasion and metastasis. To our knowledge, however, there are...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.16.4.725

    authors: Tanaka Y,Mimori K,Shiraishi T,Ohkura Y,Takubo K,Mafune K,Barnard GF,Mori M

    更新日期:2000-04-01 00:00:00

  • Co-expression of beta-adrenergic receptors and cyclooxygenase-2 in pulmonary adenocarcinoma.

    abstract::Pulmonary adenocarcinoma (PAC) is the leading type of lung cancer and is highly resistant to conventional cancer therapy. A better understanding of the regulatory mechanisms which control the growth of this deadly malignancy are urgently needed to develop more effective cancer intervention strategies. Recent studies h...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:

    authors: Schuller HM,Plummer HK 3rd,Bochsler PN,Dudric P,Bell JL,Harris RE

    更新日期:2001-09-01 00:00:00

  • Imatinib impairs the proliferation and function of CD4+CD25+ regulatory T cells in a dose-dependent manner.

    abstract::The tyrosine kinase inhibitor imatinib has been reported to inhibit CD8+ T lymphocytes. Little is known about its effects on CD4+CD25+ regulatory T cells (T(reg) cells) which might regulate the graft-vs.-leukemia (GVL) reaction after allogeneic stem cell transplantation (allo-SCT) and donor lymphocyte infusion (DLI). ...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:

    authors: Chen J,Schmitt A,Giannopoulos K,Chen B,Rojewski M,Döhner H,Bunjes D,Schmitt M

    更新日期:2007-11-01 00:00:00

  • A novel curcuminoid exhibits enhanced antitumor activity in nasopharyngeal carcinoma.

    abstract::Curcumin shows growth-inhibition against tumor cells through multi-target mechanisms. Nevertheless, the poor stability and pharmacokinetics considerably limit its clinical functions. Increased effort has been put into the chemical alteration of curcumin to find potential analogues with improved bioavailability and ant...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2016.3425

    authors: Pan Y,Liu G,Xiao J,Su B,Zhou F,Wei Y

    更新日期:2016-05-01 00:00:00

  • Transcriptome analysis of hepatitis B virus-associated small hepatocellular carcinoma by serial analysis of gene expression.

    abstract::Serial analysis of gene expression (SAGE) is a sequence-based tool that enables quantitative study of comprehensive gene expression profiles. In this study, we generated a SAGE library of hepatitis B virus (HBV)-associated small hepatocellular carcinoma (HCC) and compared it with libraries of normal liver and other or...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo_00000321

    authors: Kim JW,Lee SH,Park YS,Jeong SH,Kim N,Lee DH,Lee HS

    更新日期:2009-07-01 00:00:00

  • The estrogen receptor signaling pathway activated by phthalates is linked with transforming growth factor-β in the progression of LNCaP prostate cancer models.

    abstract::The distinct roles of estrogen receptors (ERs) related with androgen receptors (ARs) have been proposed in prostate cancer, while the involvement of transforming growth factor-β (TGF-β) has been reported in the progression of prostate cancer. In this study, we examined whether the TGF-β signaling pathway is associated...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2014.2460

    authors: Lee HR,Hwang KA,Choi KC

    更新日期:2014-08-01 00:00:00

  • Promoter methylation of RASSF1A modulates the effect of the microtubule-targeting agent docetaxel in breast cancer.

    abstract::Docetaxel is one of the most commonly used chemotherapeutic agents in breast cancer. To avert from significant toxicities with no clinical benefit, identification of predictive markers for response is one of the most important unsolved clinical needs. Therefore, the potential associ...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2012.1470

    authors: Gil EY,Jo UH,Jeong H,Whang YM,Woo OH,Cho KR,Seo JH,Kim A,Lee ES,Koh I,Kim YH,Park KH

    更新日期:2012-08-01 00:00:00

  • FOXO3a‑SIRT6 axis suppresses aerobic glycolysis in melanoma.

    abstract::Melanoma, the most aggressive human skin tumor, has a very short survival time, and there are currently no effective treatments. Alterations in cell metabolism, such as enhanced aerobic glycolysis, have been identified as hallmarks of cancer cells. In the present study, bioinformatics studies using online databases re...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2020.4964

    authors: Dong Z,Yang J,Li L,Tan L,Shi P,Zhang J,Zhong X,Ge L,Wu Z,Cui H

    更新日期:2020-03-01 00:00:00

  • miRNA expression pattern associated with prognosis in elderly patients with advanced OPSC and OCC.

    abstract::The long-term survival for elderly patients with advanced ovarian papillary serous carcinoma (OPSC) does not exceed 30%, and the incidence and prognosis rise continuously after menopause. The aim of this study was to identify the differences in key miRNAs and their potential regulators through miRNA microarray analysi...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2013.1988

    authors: Zhao H,Ding Y,Tie B,Sun ZF,Jiang JY,Zhao J,Lin X,Cui S

    更新日期:2013-09-01 00:00:00

  • Downregulation of miR-374b-5p promotes chemotherapeutic resistance in pancreatic cancer by upregulating multiple anti-apoptotic proteins.

    abstract::Resistance to first-line chemotherapeutic drugs such as gemcitabine contributes to the poor prognosis of patients with pancreatic cancer. MicroRNAs (miRNA) regulate chemoresistance in pancreatic cancer. By analyzing the miRNA sequencing dataset of pancreatic cancer from The Cancer Genome Atlas, it was demonstrated tha...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2018.4315

    authors: Sun D,Wang X,Sui G,Chen S,Yu M,Zhang P

    更新日期:2018-05-01 00:00:00

  • Immunotherapy for malignant tumors using combination of allogeneic intra-bone marrow-bone marrow transplantation, donor lymphocyte infusion and dendritic cells.

    abstract::We have previously shown that the combination of allogeneic intra-bone marrow-bone marrow transplantation (IBM-BMT) and donor lymphocyte infusion (DLI) using CD4+ cell-depleted spleen cells is effective in suppressing tumor growth, but that this does not induce graft-versus-host disease (GVHD) in mice. In this report,...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:

    authors: Mukaide H,Adachi Y,Koike-Kiriyama N,Suzuki Y,Minamino K,Iwasaki M,Tsuda M,Nakano K,Koike Y,Shigematsu A,Kamiyama Y,Ikehara S

    更新日期:2007-06-01 00:00:00

  • Tumor hypoxia: Impact on gene amplification in glioblastoma.

    abstract::Gene amplification is frequently found in human glioblastoma but the mechanisms driving amplifications remain to be elucidated. Hypoxia as hallmark of glioblastoma is known to be involved in the induction of fragile sites that are central to gene amplification. We analyzed the potential of hypoxia (pO2 0%) and mini hy...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:

    authors: Fischer U,Radermacher J,Mayer J,Mehraein Y,Meese E

    更新日期:2008-09-01 00:00:00

  • Substrate stiffness affects epithelial-mesenchymal transition of cervical cancer cells through miR-106b and its target protein DAB2.

    abstract::The effects of different substrate stiffness were investigated on epithelial-mesenchymal transition (EMT) of cervical cancer cell lines and the role of miR-106b and its target protein DAB2 therein. Cervical cancer cell lines HeLa and SiHa were cultured on artificial substrates with different stiffness prepared using d...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2017.3978

    authors: Piao J,You K,Guo Y,Zhang Y,Li Z,Geng L

    更新日期:2017-06-01 00:00:00

  • Correlation between the immunohistochemical and mRNA expression of glutathione S-transferase-pi and cisplatin plus etoposide chemotherapy response in patients with untreated primary non-small cell lung cancer.

    abstract::Patients who have inoperable lung cancer usually undergo chemotherapy and have problems such as a resistance against chemotherapeutic agents during the treatment. Glutathione S-transferase (GST) is one of the detoxication-related enzymes. We studied the relationship between immunohisto-chemical staining of GST-pi type...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.11.1.127

    authors: Arai T,Yasuda Y,Takaya T,Yoshimi N,Ito H,Fujiwara H

    更新日期:1997-07-01 00:00:00

  • The selective cytotoxicity elicited by phytochemical extract from Senecio graveolens (Asteraceae) on breast cancer cells is enhanced by hypoxia.

    abstract::Breast cancer is the second cause of cancer‑related deaths in woman and the incidence of the disease has increased worldwide, in part due to improvements in early detection. Several drugs with anticancer effects have been extracted from plants in the last 20 years, many of which are particularly effective against brea...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2014.2302

    authors: Echiburú-Chau C,Alfaro-Lira S,Brown N,Salas CO,Cuellar M,Santander J,Ogalde JP,Rothhammer F

    更新日期:2014-04-01 00:00:00

  • Human tumor-cell growth modulatory effects of the aebs/hic-binding drugs used as single agents and in combination with a novel amphibian oocyte rnase.

    abstract::A novel amphibian oocyte RNase, ONCONASE(R) (ONC), has been previously shown to have synergistic tumor cell growth inhibitory activity when combined with tamoxifen (TMX) and/or trifluoperazine (TFP) in human ASPC-1 pancreatic and A-549 lung carcinoma cells, respectively. It has recently been reported that several drug...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2.5.807

    authors: Mikulski S,Viera A,Shogen K

    更新日期:1993-05-01 00:00:00

  • No microsatellite instability, but frequent LOH in liposarcomas.

    abstract::To evaluate the significance of microsatellite instability (MI) and loss of heterozygosity (LOH) in the development of different histological subgroups of liposarcomas, we examined 28 tissue-samples from 21 patients and the corresponding non-neoplastic reference tissues. We investigated nine microsatellite loci and de...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.14.4.721

    authors: Schneider-Stock R,Szibor R,Walter H,Plate I,Roessner A

    更新日期:1999-04-01 00:00:00

  • Ganoderma lucidum inhibits proliferation and induces apoptosis in human prostate cancer cells PC-3.

    abstract::Ganoderma lucidum (Reishi), an oriental medical mushroom, has been widely used in Asian countries for centuries to prevent or treat different diseases, including cancer. However, the mechanism(s) responsible for the effects of Ganoderma lucidum on cancer cells remain to be elucidated. We have previously demonstrated t...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:

    authors: Jiang J,Slivova V,Valachovicova T,Harvey K,Sliva D

    更新日期:2004-05-01 00:00:00

  • Expression of second class of KIP protein p57KIP2 in human colorectal carcinoma.

    abstract::p57KIP2, the second class of KIP family protein, is one of the negative regulators of the cell cycle. To elucidate the role of p57KIP2 in colorectal normal mucosa and cancer, we examined the expression of p57KIP2 protein in 110 pairs of colorectal non-tumor and cancer tissues. Immunohistochemical analysis showed that ...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.19.1.39

    authors: Noura S,Yamamoto H,Sekimoto M,Takemasa I,Miyake Y,Ikenaga M,Matsuura N,Monden M

    更新日期:2001-07-01 00:00:00

  • Akt inhibitors in cancer treatment: The long journey from drug discovery to clinical use (Review).

    abstract::Targeted cancer therapies are used to inhibit the growth, progression, and metastasis of the tumor by interfering with specific molecular targets and are currently the focus of anticancer drug development. Protein kinase B, also known as Akt, plays a central role in many types of cancer and has been validated as a the...

    journal_title:International journal of oncology

    pub_type: 杂志文章,评审

    doi:10.3892/ijo.2015.3306

    authors: Nitulescu GM,Margina D,Juzenas P,Peng Q,Olaru OT,Saloustros E,Fenga C,Spandidos DΑ,Libra M,Tsatsakis AM

    更新日期:2016-03-01 00:00:00

  • Genomic profiling of long non-coding RNA and mRNA expression associated with acquired temozolomide resistance in glioblastoma cells.

    abstract::Temozolomide (TMZ) is an alkylating chemotherapeutic agent widely used in anti-glioma treatment. However, acquired TMZ resistance represents a major clinical challenge that leads to tumor relapse or progress. This study investigated the genomic profiles including long non-coding RNA (lncRNA) and mRNA expression associ...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2017.4033

    authors: Zeng H,Xu N,Liu Y,Liu B,Yang Z,Fu Z,Lian C,Guo H

    更新日期:2017-08-01 00:00:00

  • Gene therapy of chondrosarcoma using retrovirus vectors encoding the herpes simplex virus thymidine kinase gene.

    abstract::Human chondrosarcoma cells (HCS-TG) were transduced with the gene for a herpes simplex virus thymidine kinase (HSV-tk) or Escherichia coli beta-galactosidase (lacZ). We investigated the cytotoxicity of human chondrosarcoma bearing an HSV-tk gene after treatment with ganciclovir. Chondrosarcoma cells bearing an HSV-tk ...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.14.6.1137

    authors: Seto M,Wakabayashi H,Yamazaki T,Sonoda J,Shinto Y,Uchida A

    更新日期:1999-06-01 00:00:00

  • Phosphorylation of p53, induction of Bax and activation of caspases during beta-lapachone-mediated apoptosis in human prostate epithelial cells.

    abstract::The DNA topoisomerase I inhibitor beta-lapachone, the product of a tree from South America, is known to exhibit various biological properties, the mechanisms of which are poorly understood. We investigated the effects of beta-lapachone on the growth of human prostate epithelial cells. Upon treatment with beta-lapachon...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:

    authors: Choi YH,Kim MJ,Lee SY,Lee YN,Chi GY,Eom HS,Kim ND,Choi BT

    更新日期:2002-12-01 00:00:00

  • Endosialin: a novel malignant cell therapeutic target for neuroblastoma.

    abstract::Endosialin emerged recently as a potential therapeutic target for sarcoma. Since some sarcoma subtypes, such as Ewing's sarcoma, show characteristics of neuroendocrine differentiation, we wondered whether cancers with neuro-endocrine properties and/or neuroectodermal origin, such as neuroblastoma, small cell lung canc...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2011.1091

    authors: Rouleau C,Smale R,Sancho J,Fu YS,Kurtzberg L,Weber W,Kruger A,Jones C,Roth S,Bormann C,Dunham S,Krumbholz R,Curiel M,Wallar G,Mascarello J,Campos-Rivera J,Horten B,Schmid S,Miller G,Teicher BA

    更新日期:2011-10-01 00:00:00

  • DNA fragility and repair capability are separate genetic phenotypes - studies on in-situ nick translation and chromosome breakage.

    abstract::Three separate experiments, designed to minimize the DNA repair process following exposures to mutagens, were performed to determine whether DNA repair capability is the sole factor responsible for differential mutagen sensitivity. These experiments included (i) very short bleomycin pulse treatments (2, 5 and 10 min),...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.6.1.51

    authors: Wang R,Hsu T,Brock W,Liang J

    更新日期:1995-01-01 00:00:00

  • Mitotic catastrophe induced in HeLa cells by photodynamic treatment with Zn(II)-phthalocyanine.

    abstract::Photodynamic therapy (PDT) is a tool against neoplastic and non-neoplastic diseases. PDT is capable to induce different cell death mechanisms in vitro, triggered in a dose-dependent manner. Relationships between PDT and apoptosis or necrosis induction are well-known, but other cell death mechanisms triggered after PDT...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo_32_6_1189

    authors: Rello-Varona S,Stockert JC,Cañete M,Acedo P,Villanueva A

    更新日期:2008-06-01 00:00:00

  • Novel crosstalk between KLF4 and ZEB1 regulates gemcitabine resistance in pancreatic ductal adenocarcinoma.

    abstract::Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal malignancies with broad resistance to chemotherapeutic drugs. Krüppel-like factor 4 (KLF4) is a candidate tumor suppressor in PDAC. However, the precise role of KLF4 in gemcitabine resistance of PDAC remains largely unclear. In this study, we demonstrat...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2017.4099

    authors: Wang Z,Chen Y,Lin Y,Wang X,Cui X,Zhang Z,Xian G,Qin C

    更新日期:2017-10-01 00:00:00

  • NK cell depletion results in accelerated tumor growth and attenuates the antitumor effect of total body irradiation.

    abstract::Total body irradiation (TBI), given in low to moderate doses as a single modality, can enhance leukocyte populations and immune modifiers, resulting in slowed tumor progression. The aim of this study was to evaluate natural killer (NK) cell involvement in mediating the antitumor effect of TBI by depleting NK populatio...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:

    authors: Miller GM,Andres ML,Gridley DS

    更新日期:2003-12-01 00:00:00

  • SCTR regulates cell cycle-related genes toward anti-proliferation in normal breast cells while having pro-proliferation activity in breast cancer cells.

    abstract::Secretin receptor (SCTR), the G-protein coupled receptor (GPCR) for secretin, has been observed to be upregulated in a few tumor types while downregulated in others, promoting or suppressing the proliferation of tumor cells, respectively. However, little is known about the molecular regulatory mechanism of dysregulati...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2015.3164

    authors: Kang S,Kim B,Kang HS,Jeong G,Bae H,Lee H,Lee S,Kim SJ

    更新日期:2015-11-01 00:00:00

  • Survivin suppression through STAT3/β-catenin is essential for resveratrol-induced melanoma apoptosis.

    abstract::Although many chemotherapies have been developed for melanomas, successful therapy would be aided by the identification of intrinsic mechanisms that are crucial for melanoma survival. Here, we used resveratrol, a phytoalexin, as an anti-melanoma reagent. Applying resveratrol to various human and murine melanoma cell l...

    journal_title:International journal of oncology

    pub_type: 杂志文章

    doi:10.3892/ijo.2014.2480

    authors: Habibie,Yokoyama S,Abdelhamed S,Awale S,Sakurai H,Hayakawa Y,Saiki I

    更新日期:2014-08-01 00:00:00