Running up that hill: How to create cellular lipid gradients by lipid counter-flows.

Abstract:

:Lipids are unevenly distributed within eukaryotic cells, allowing various processes to work in an optimized membrane environment. Rather than following vesicular trafficking pathways, certain lipids are transported by lipid transfer proteins (LTPs), some at sites of close apposition of two organelles called membrane contact sites (MCSs). An important question is whether or not LTPs are able to convey lipids to create and maintain the lipid gradients observed between organelles. Recent data shows that LTPs from the ORP/Osh family transport sterols and phosphatidylserine (PS) to the Golgi and plasma membrane, respectively, through counter-exchange for the phosphoinositide phosphatidylinositol 4-phosphate (PI4P). Coupling PI4P-driven exchange to PI4P metabolism allows for an accumulation of these lipids in specific organelles and for a regulation of ORP/Osh proteins in MCSs. Additionally, data indicate that PI4P/sterol exchanges are hijacked by various virus strains to generate replication organelles. Compounds called ORPhilins block PI4P/sterol exchange and have thereby powerful antiviral activities, indicating in turn that some ORP/Osh proteins might be relevant pharmaceutical targets.

journal_name

Biochimie

journal_title

Biochimie

authors

Moser von Filseck J,Drin G

doi

10.1016/j.biochi.2016.08.001

subject

Has Abstract

pub_date

2016-11-01 00:00:00

pages

115-121

eissn

0300-9084

issn

1638-6183

pii

S0300-9084(16)30149-3

journal_volume

130

pub_type

杂志文章,评审
  • Proteases and their inhibitors: today and tomorrow.

    abstract::A major incentive in inhibitor research is that control of limited proteolysis constitutes a valuable pharmacological tool. Protease inhibitors have proved to be successful in influencing pathogenesis in many experimental models but a breakthrough to use in human therapy has mainly been restricted to aprotinin and ang...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(91)90084-e

    authors: Scharpe S,De Meester I,Hendriks D,Vanhoof G,van Sande M,Vriend G

    更新日期:1991-01-01 00:00:00

  • Thermodynamic investigation of kissing-loop interactions.

    abstract::Kissing loop interactions (KLIs) are a common motif that is critical in retroviral dimerization, viroid replication, mRNA, and riboswitches. In addition, KLIs are currently used in a variety of biotechnology applications, such as in aptamer sensors, RNA scaffolds and to stabilize vaccines for therapeutics. Here we des...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2018.11.012

    authors: Carr CE,Marky LA

    更新日期:2019-02-01 00:00:00

  • tRNAs as primer of reverse transcriptases.

    abstract::Genetic elements coding for proteins that present amino acid identity with the conserved motifs of retroviral reverse transcriptases constitute the retroid family. With the exception of reverse transcriptases encoded by mitochondrial plasmids of Neurospora, all reverse transcriptases have an absolute requirement for a...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(96)88114-4

    authors: Marquet R,Isel C,Ehresmann C,Ehresmann B

    更新日期:1995-01-01 00:00:00

  • Modulation of membrane function by cholesterol.

    abstract::The molecular basis for the essential role of cholesterol in mammalian (and other cholesterol-requiring) cells has long been the object of intense interest. Cholesterol has been found to modulate the function of membrane proteins critical to cellular function. Current literature supports two mechanisms for this modula...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(91)90093-g

    authors: Yeagle PL

    更新日期:1991-10-01 00:00:00

  • Poly(ADP-ribose) degradation by post-nuclear extracts from human cells.

    abstract::The nuclear metabolism of poly(ADP-ribose) is mainly regulated by poly(ADP-ribose) polymerase-1 (PARP-1) and by poly(ADP-ribose) glycohydrolase (PARG). A PARP-like enzyme, V-PARP, and a PARG isoform are present in the extra-nuclear compartment of mammalian cells, even if poly(ADP-ribose) has never been detected therei...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(02)00017-2

    authors: Rossi L,Denegri M,Torti M,Poirier GG,Ivana Scovassi A

    更新日期:2002-12-01 00:00:00

  • LPA-induced suppression of periostin in human osteosarcoma cells is mediated by the LPA(1)/Egr-1 axis.

    abstract::Lysophosphatidic acid (LPA), a naturally occurring bioactive phospholipid, mediates a multitude of (patho)physiological events including activation of mitogen-activated protein kinases (MAPKs). As LPA may induce cellular reponses in human osteosarcoma, the present study aimed at investigating expression of various LPA...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2012.05.023

    authors: Windischhofer W,Huber E,Rossmann C,Semlitsch M,Kitz K,Rauh A,Devaney T,Leis HJ,Malle E

    更新日期:2012-09-01 00:00:00

  • Expression of eukaryotic glycosyltransferases in the yeast Pichia pastoris.

    abstract::The methylotrophic yeast Pichia pastoris is often used as an organism for the heterologous expression of proteins and has been used already for production of a number of glycosyltransferases involved in the biosynthesis of N- and O-linked oligosaccharides. In our recent studies, we have examined the expression in P. p...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(03)00072-5

    authors: Bencúrová M,Rendić D,Fabini G,Kopecky EM,Altmann F,Wilson IB

    更新日期:2003-03-01 00:00:00

  • Isotopic discrimination between D-[1-(13)C]fructose and D-[2-(13)C]fructose in rat liver cells.

    abstract::When liver cells from either normal or hereditarily diabetic rats are exposed to (13)C-enriched D-fructose (10 mM) and unlabelled D-glucose (also 10 mM) in the presence of D(2)O, the output of (13)C-enriched D-glucose generated from D-[1-(13)C]fructose is significantly lower than that from D-[2-(13)C]fructose. This co...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2003.12.005

    authors: Malaisse WJ,Willem R

    更新日期:2004-02-01 00:00:00

  • Comparison of histidine recognition in human and trypanosomatid histidyl-tRNA synthetases.

    abstract::As part of a project aimed at obtaining selective inhibitors and drug-like compounds targeting tRNA synthetases from trypanosomatids, we have elucidated the crystal structure of human cytosolic histidyl-tRNA synthetase (Hs-cHisRS) in complex with histidine in order to be able to compare human and parasite enzymes. The...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.08.005

    authors: Koh CY,Wetzel AB,de van der Schueren WJ,Hol WG

    更新日期:2014-11-01 00:00:00

  • Assembly of chloroplast cytochromes b and c.

    abstract::The synthesis of holocytochromes in plastids is a catalyzed process. Several proteins, including plastid CcsA, Ccs1, possibly CcdA and a thioredoxin, plus at least two additional Ccs factors, are required in sub-stoichiometric amounts for the conversion of apocytochromes f and c(6) to their respective holoforms. CcsA,...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(00)00605-2

    authors: Nakamoto SS,Hamel P,Merchant S

    更新日期:2000-06-01 00:00:00

  • Potential secondary structure at the translational start domain of eukaryotic and prokaryotic mRNAs.

    abstract::In order to identify conserved potential secondary structures within translational start sites, mRNA sequences derived from different species were studied with programs able to depict such features. The potential secondary structure of 71 bases around the initiator AUG or AUGs in the coding sequences of 290 eukaryotic...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(94)90120-1

    authors: Ganoza MC,Louis BG

    更新日期:1994-01-01 00:00:00

  • Antihyperglycemic effect of fraxetin on hepatic key enzymes of carbohydrate metabolism in streptozotocin-induced diabetic rats.

    abstract::Epidemiological studies have demonstrated that the diabetes mellitus is a serious health burden for both governments and healthcare providers. The present study was hypothesized to evaluate the antihyperglycemic potential of fraxetin by determining the activities of key enzymes of carbohydrate metabolism in streptozot...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2013.06.013

    authors: Murali R,Srinivasan S,Ashokkumar N

    更新日期:2013-10-01 00:00:00

  • Non-canonical substrates of aminoacyl-tRNA synthetases: the tRNA-like structure of brome mosaic virus genomic RNA.

    abstract::A 3-D model of the tyrosylable tRNA-like domain of the genomic brome mosaic virus RNAs was built by computer modelling based on solution probing of the molecule with different chemical and enzymatic reagents. This model encompasses four major structural domains, including two peculiar substructures oriented perpendicu...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(93)90014-j

    authors: Felden B,Florentz C,Westhof E,Giegé R

    更新日期:1993-01-01 00:00:00

  • Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.

    abstract::Sm and Sm-like (Lsm) proteins are considered as an evolutionary conserved family involved in RNA metabolism in organisms from bacteria and archaea to human. Currently, the function of Sm-like archaeal proteins (SmAP) is not well understood. Here, we report the crystal structures of SmAP proteins from Sulfolobus acidoc...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2020.05.001

    authors: Lekontseva N,Mikhailina A,Fando M,Kravchenko O,Balobanov V,Tishchenko S,Nikulin A

    更新日期:2020-08-01 00:00:00

  • Structure, biological functions and inhibition of the HIV-1 proteins Vpr and NCp7.

    abstract::The Gag-encoded nucleocapsid protein NCp7 (72 amino acids) from HIV-1, the regulatory protein, Vpr (96 amino acids) and numerous derivatives have been synthesized by solid phase method and their structures determined by 2D NMR. In NCp7, the two highly folded zinc fingers of the Cx2Cx4Hx4C type are in close spacial pro...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(97)83501-8

    authors: Roques BP,Morellet N,de Rocquigny H,Déméné H,Schueler W,Jullian N

    更新日期:1997-11-01 00:00:00

  • Disintegrins of Crotalus simus tzabcan venom: Isolation, characterization and evaluation of the cytotoxic and anti-adhesion activities of tzabcanin, a new RGD disintegrin.

    abstract::Disintegrins are small non-enzymatic proteins common in the venoms of many viperid snakes. These proteins have received significant attention due to their ability to inhibit platelet aggregation and cell adhesion, making them model compounds in drug development and design investigations. The present study used a combi...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.07.005

    authors: Saviola AJ,Modahl CM,Mackessy SP

    更新日期:2015-09-01 00:00:00

  • Myelin consists of a continuum of particles of different density with varying lipid composition: major differences are found between normal mice and quaking mutants.

    abstract::Mouse brain myelin consists of a continuum of particles of different densities, as shown by sucrose density gradient centrifugation. In normal animals most of the material (65 per cent) is concentrated between 0.6 and 0.7 M sucrose (the maximum being found at 0.66 M sucrose, corresponding to 23 per cent). The density ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(77)80213-7

    authors: Bourre JM,Pollet S,Daudu O,Le Saux F,Baumann N

    更新日期:1977-01-01 00:00:00

  • Snake toxins with high selectivity for subtypes of muscarinic acetylcholine receptors.

    abstract::There are five subtypes of muscarinic acetylcholine receptors (M(1) to M(5)) which control a large number of physiological processes, such as the function of heart and smooth muscles, glandular secretion, release of neurotransmitters, gene expression and cognitive functions as learning and memory. A selective ligand i...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(00)01176-7

    authors: Karlsson E,Jolkkonen M,Mulugeta E,Onali P,Adem A

    更新日期:2000-09-01 00:00:00

  • The efficient cell-SELEX strategy, Icell-SELEX, using isogenic cell lines for selection and counter-selection to generate RNA aptamers to cell surface proteins.

    abstract::Aptamers are short single-stranded nucleic acid molecules that are selected in vitro from a large random sequence library based on their high and specific affinity to a target molecule by a process known as SELEX. Cell-SELEX that employs whole living cells overexpressing the defined cell surface proteins (for selectio...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2016.09.018

    authors: Takahashi M,Sakota E,Nakamura Y

    更新日期:2016-12-01 00:00:00

  • Cytoplasmic peptidoglycan intermediate levels in Staphylococcus aureus.

    abstract::Intracellular cytoplasmic peptidoglycan (PG) intermediate levels were determined in Staphylococcus aureus during log-phase growth in enriched media. Levels of UDP-linked intermediates were quantitatively determined using ion pairing LC-MS/MS in negative mode, and amine intermediates were quantitatively determined ster...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.11.017

    authors: Vemula H,Ayon NJ,Gutheil WG

    更新日期:2016-02-01 00:00:00

  • The proteolytic system of Penicillium roqueforti. V. -- Purification and properties of an alkaline aminopeptidase.

    abstract::An alkaline aminopeptidase was isolated from the culture medium of Penicillium roqueforti. The enzyme was purified by ammonium sulfate precipitation, filtration on Bio-Gel P-100, chromatography on D.E.A.E.-cellulose and hydroxylapatite, filtration on Bio-Gel P-150 and electrofusing. The purified preparation was homoge...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(77)80246-0

    authors: Gripon JC

    更新日期:1977-01-01 00:00:00

  • Iron increases liver injury through oxidative/nitrative stress in diabetic rats: Involvement of nitrotyrosination of glucokinase.

    abstract::Excessive tissue iron levels are associated with the increase of oxidative/nitrative stress which contributes to tissue damage that may elevate the risk of diabetes. Therefore, we investigated the effects of iron on diabetes-associated liver injury and whether iron-related tyrosine nitration participated in this proce...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2012.07.019

    authors: Li X,Li H,Lu N,Feng Y,Huang Y,Gao Z

    更新日期:2012-12-01 00:00:00

  • Does histone H1 bind specifically to the nuclear factor I recognition sequence?

    abstract::The issue of whether histone H1 possesses specificity of binding to certain nucleotide sequences in DNA is of fundamental importance to the suggested role of the linker histone in the regulation of gene transcription. The purpose of the present study was to reinvestigate the specificity of binding of histone H1 to the...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(93)90116-a

    authors: Yaneva JN,Zlatanova JS

    更新日期:1993-01-01 00:00:00

  • Diacylglycerol kinase η regulates C2C12 myoblast proliferation through the mTOR signaling pathway.

    abstract::Diacylglycerol kinase (DGK) phosphorylates diacylglycerol to produce phosphatidic acid (PA). The η isozyme of DGK is abundantly expressed in C2C12 myoblasts. However, the role of DGKη in skeletal muscle cells remains unknown. In the present study, we showed that DGKη was downregulated at an early stage of myogenic dif...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2020.07.018

    authors: Sakai H,Murakami C,Usuki T,Lu Q,Matsumoto KI,Urano T,Sakane F

    更新日期:2020-10-01 00:00:00

  • Pathophysiological functions of cathepsin D: Targeting its catalytic activity versus its protein binding activity?

    abstract::The lysosomal aspartic protease cathepsin D (cath-D) is overexpressed and hyper-secreted by epithelial breast cancer cells. This protease is an independent marker of poor prognosis in breast cancer as it is correlated with the incidence of clinical metastasis. In normal cells, cath-D is localized in intracellular vesi...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2010.05.009

    authors: Masson O,Bach AS,Derocq D,Prébois C,Laurent-Matha V,Pattingre S,Liaudet-Coopman E

    更新日期:2010-11-01 00:00:00

  • Variations in some molecular events during the early phases of the Reuber H 35 cell cycle. II.-Chromatin protein phosphorylation and protein kinases.

    abstract::Reuber H 35 hepatoma cells were synchronized by transfer in a serum free medium. Growth was re-initiated by addition of serum. Under these conditions DNA synthesis exhibited a maximum after 24 hours. Chromatin non-histone proteins prepared from cells at various phases of the cell cycle were incubated with [gamma-32P] ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(79)80280-1

    authors: Defer N,Tichonicky L,Kruh J,Zoutewelle G,Van Wijk R

    更新日期:1979-01-01 00:00:00

  • Prediction of bacterial protein subcellular localization by incorporating various features into Chou's PseAAC and a backward feature selection approach.

    abstract::Information on the subcellular localization of bacterial proteins is essential for protein function prediction, genome annotation and drug design. Here we proposed a novel approach to predict the subcellular localization of bacterial proteins by fusing features from position-specific score matrix (PSSM), Gene Ontology...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.06.001

    authors: Li L,Yu S,Xiao W,Li Y,Li M,Huang L,Zheng X,Zhou S,Yang H

    更新日期:2014-09-01 00:00:00

  • Characterization of all the lipolytic activities in pancreatin and comparison with porcine and human pancreatic juices.

    abstract::Porcine pancreatic extracts (PPE), also named pancreatin, are commonly used as a global source of pancreatic enzymes for enzyme replacement therapy in patients with exocrine pancreatic insufficiency. They are considered as a good substitute of human pancreatic enzymes and they have become a material of choice for in v...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2019.07.004

    authors: Salhi A,Amara S,Mansuelle P,Puppo R,Lebrun R,Gontero B,Aloulou A,Carrière F

    更新日期:2020-02-01 00:00:00

  • A stepwise approach to the understanding of extracellular enzyme activity in soil. II. Competitive effects on the adsorption of a beta-D-glucosidase in mixed mineral or organo-mineral systems.

    abstract::A previous study has shown the effect of individual mineral surfaces on the activity of sweet almond beta-D-glucosidase. We now consider more complex situations likely to occur in soil, such as adsorption onto mixtures of different mineral surfaces, and the effect on enzyme activity of mineral surfaces with organic co...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(87)90197-0

    authors: Quiquampoix H

    更新日期:1987-06-01 00:00:00

  • Structure-function relationships of elongation factor Tu as studied by mutagenesis.

    abstract::We have modified elongation factor Tu (EF-Tu) from Escherichia coli via mutagenesis of its encoding tufA gene to study its function-structure relationships. The isolation of the N-terminal half molecule of EF-Tu (G domain) has facilitated the analysis of the basic EF-Tu activities, since the G domain binds the substra...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(91)90147-s

    authors: Anborgh PH,Cool RH,Gümüsel F,Harmark K,Jacquet E,Weijland A,Mistou MY,Parmeggiani A

    更新日期:1991-07-01 00:00:00