Metabolomic Profiling of Bradyrhizobium diazoefficiens-Induced Root Nodules Reveals Both Host Plant-Specific and Developmental Signatures.

Abstract:

:Bradyrhizobium diazoefficiens is a nitrogen-fixing endosymbiont, which can grow inside root-nodule cells of the agriculturally important soybean and other host plants. Our previous studies described B. diazoefficiens host-specific global expression changes occurring during legume infection at the transcript and protein level. In order to further characterize nodule metabolism, we here determine by flow injection-time-of-flight mass spectrometry analysis the metabolome of (i) nodules and roots from four different B. diazoefficiens host plants; (ii) soybean nodules harvested at different time points during nodule development; and (iii) soybean nodules infected by two strains mutated in key genes for nitrogen fixation, respectively. Ribose (soybean), tartaric acid (mungbean), hydroxybutanoyloxybutanoate (siratro) and catechol (cowpea) were among the metabolites found to be specifically elevated in one of the respective host plants. While the level of C4-dicarboxylic acids decreased during soybean nodule development, we observed an accumulation of trehalose-phosphate at 21 days post infection (dpi). Moreover, nodules from non-nitrogen-fixing bacteroids (nifA and nifH mutants) showed specific metabolic alterations; these were also supported by independent transcriptomics data. The alterations included signs of nitrogen limitation in both mutants, and an increased level of a phytoalexin in nodules induced by the nifA mutant, suggesting that the tissue of these nodules exhibits defense and stress reactions.

journal_name

Int J Mol Sci

authors

Lardi M,Murset V,Fischer HM,Mesa S,Ahrens CH,Zamboni N,Pessi G

doi

10.3390/ijms17060815

subject

Has Abstract

pub_date

2016-05-27 00:00:00

issue

6

issn

1422-0067

pii

ijms17060815

journal_volume

17

pub_type

杂志文章
  • Human Leukocyte Antigen Class II Alleles Are Associated with Hepatitis C Virus Natural Susceptibility in the Chinese Population.

    abstract::Human leukocyte antigen (HLA) class II molecule influences host antigen presentation and anti-viral immune response. The aim of this study was to investigate whether single nucleotide polymorphisms (SNPs) within HLA class II gene were associated with different clinical outcomes of hepatitis C virus (HCV) infection. Th...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms160816792

    authors: Yue M,Xu K,Wu MP,Han YP,Huang P,Peng ZH,Wang J,Su J,Yu RB,Li J,Zhang Y

    更新日期:2015-07-23 00:00:00

  • Oxathiapiprolin, a Novel Chemical Inducer Activates the Plant Disease Resistance.

    abstract::Oxathiapiprolin was developed as a specific plant pathogenic oomycete inhibitor, previously shown to have highly curative and protective activities against the pepper Phytophthora blight disease under field and greenhouse tests. Therefore, it was hypothesized that oxathiapiprolin might potentially activate the plant d...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21041223

    authors: Peng Q,Wang Z,Liu P,Liang Y,Zhao Z,Li W,Liu X,Xia Y

    更新日期:2020-02-12 00:00:00

  • Unhealthy Levels of Phthalates and Bisphenol A in Mexican Pregnant Women with Gestational Diabetes and Its Association to Altered Expression of miRNAs Involved with Metabolic Disease.

    abstract::Several studies indicate that bisphenol A (BPA) and phthalates may have a role in the development of metabolic diseases using different molecular pathways, including epigenetic regulatory mechanisms. However, it is unclear whether exposure to these chemicals modifies serum levels of miRNAs associated with gestational ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20133343

    authors: Martínez-Ibarra A,Martínez-Razo LD,Vázquez-Martínez ER,Martínez-Cruz N,Flores-Ramírez R,García-Gómez E,López-López M,Ortega-González C,Camacho-Arroyo I,Cerbón M

    更新日期:2019-07-07 00:00:00

  • A Proline Derivative-Enriched Fraction from Sideroxylon obtusifolium Protects the Hippocampus from Intracerebroventricular Pilocarpine-Induced Injury Associated with Status Epilepticus in Mice.

    abstract::The N-methyl-(2S,4R)-trans-4-hydroxy-l-proline-enriched fraction (NMP) from Sideroxylon obtusifolium was evaluated as a neuroprotective agent in the intracerebroventricular (icv) pilocarpine (Pilo) model. To this aim, male mice were subdivided into sham (SO, vehicle), Pilo (300 µg/1 µL icv, followed by the vehicle per...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21114188

    authors: de Aquino PEA,Rabelo Bezerra J,de Souza Nascimento T,Tavares J,Rosal Lustosa Í,Chaves Filho AJM,Mottin M,Macêdo Gaspar D,Andrade GM,Tavares Neves KR,Biagini G,Silveira ER,de Barros Viana GS

    更新日期:2020-06-11 00:00:00

  • DNA Damage and Repair in Schizophrenia and Autism: Implications for Cancer Comorbidity and Beyond.

    abstract::Schizophrenia and autism spectrum disorder (ASD) are multi-factorial and multi-symptomatic psychiatric disorders, each affecting 0.5%-1% of the population worldwide. Both are characterized by impairments in cognitive functions, emotions and behaviour, and they undermine basic human processes of perception and judgment...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms17060856

    authors: Markkanen E,Meyer U,Dianov GL

    更新日期:2016-06-01 00:00:00

  • EAAC1 gene deletion increases neuronal death and blood brain barrier disruption after transient cerebral ischemia in female mice.

    abstract::EAAC1 is important in modulating brain ischemic tolerance. Mice lacking EAAC1 exhibit increased susceptibility to neuronal oxidative stress in mice after transient cerebral ischemia. EAAC1 was first described as a glutamate transporter but later recognized to also function as a cysteine transporter in neurons. EAAC1-m...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms151119444

    authors: Choi BY,Kim JH,Kim HJ,Lee BE,Kim IY,Sohn M,Suh SW

    更新日期:2014-10-27 00:00:00

  • A Pilot Study of the Photoprotective Effects of Strawberry-Based Cosmetic Formulations on Human Dermal Fibroblasts.

    abstract::Strawberry polyphenols have been extensively studied over the last two decades for their beneficial properties. Recently, their possible use in ameliorating skin conditions has also been proposed; however, their role in preventing UVA-induced damage in cosmetic formulation has not yet been investigated. Skin is consta...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms160817870

    authors: Gasparrini M,Forbes-Hernandez TY,Afrin S,Alvarez-Suarez JM,Gonzàlez-Paramàs AM,Santos-Buelga C,Bompadre S,Quiles JL,Mezzetti B,Giampieri F

    更新日期:2015-08-04 00:00:00

  • A Mixture of Polyunsaturated Fatty Acids ω-3 and ω-6 Reduces Melanoma Growth by Inhibiting Inflammatory Mediators in the Murine Tumor Microenvironment.

    abstract:BACKGROUND:Although it has been previously demonstrated that acute inflammation can promote the tumor growth of a sub-tumorigenic dose of melanoma cells through of 5-lipoxygenase inflammatory pathway and its product leukotriene B4, and also that the peritumoral treatment with eicosapentaenoic acid and its product, leuk...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20153765

    authors: Almeida EB,Silva KPH,Paixão V,Amaral JBD,Rossi M,Xavier-Navarro RA,Barros KV,Silveira VLF,Vieira RP,Oliveira LVF,Perez EC,Jasiulionis MG,Bachi ALL

    更新日期:2019-08-01 00:00:00

  • First Insights into Human Fingertip Regeneration by Echo-Doppler Imaging and Wound Microenvironment Assessment.

    abstract::Fingertip response to trauma represents a fascinating example of tissue regeneration. Regeneration derives from proliferative mesenchymal cells (blastema) that subsequently differentiate into soft and skeletal tissues. Clinically, conservative treatment of the amputated fingertip under occlusive dressing can shift the...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18051054

    authors: Jafari P,Muller C,Grognuz A,Applegate LA,Raffoul W,di Summa PG,Durand S

    更新日期:2017-05-13 00:00:00

  • Biased Ligands Differentially Shape the Conformation of the Extracellular Loop Region in 5-HT2B Receptors.

    abstract::G protein-coupled receptors are linked to various intracellular transducers, each pathway associated with different physiological effects. Biased ligands, capable of activating one pathway over another, are gaining attention for their therapeutic potential, as they could selectively activate beneficial pathways whilst...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21249728

    authors: Denzinger K,Nguyen TN,Noonan T,Wolber G,Bermudez M

    更新日期:2020-12-20 00:00:00

  • Influenza A Virus-Host Protein Interactions Control Viral Pathogenesis.

    abstract::The influenza A virus (IAV), a member of the Orthomyxoviridae family, is a highly transmissible respiratory pathogen and represents a continued threat to global health with considerable economic and social impact. IAV is a zoonotic virus that comprises a plethora of strains with different pathogenic profiles. The diff...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18081673

    authors: Zhao M,Wang L,Li S

    更新日期:2017-08-01 00:00:00

  • Reductive Activity and Mechanism of Hypoxia- Targeted AGT Inhibitors: An Experimental and Theoretical Investigation.

    abstract::O6-alkylguanine-DNA alkyltransferase (AGT) is the main cause of tumor cell resistance to DNA-alkylating agents, so it is valuable to design tumor-targeted AGT inhibitors with hypoxia activation. Based on the existing benchmark inhibitor O6-benzylguanine (O6-BG), four derivatives with hypoxia-reduced potential and thei...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20246308

    authors: Xiao W,Sun G,Fan T,Liu J,Zhang N,Zhao L,Zhong R

    更新日期:2019-12-13 00:00:00

  • Coexpression and secretion of endoglucanase and phytase genes in Lactobacillus reuteri.

    abstract::A multifunctional transgenic Lactobacillus with probiotic characteristics and an ability to degrade β-glucan and phytic acid (phytate) was engineered to improve nutrient utilization, increase production performance and decrease digestive diseases in broiler chickens. The Bacillus subtilis WL001 endoglucanase gene (cel...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms150712842

    authors: Wang L,Yang Y,Cai B,Cao P,Yang M,Chen Y

    更新日期:2014-07-21 00:00:00

  • Insights into Body Size Evolution: A Comparative Transcriptome Study on Three Species of Asian Sisoridae Catfish.

    abstract::Body size is one of the most important attributes of a species, but the basic question of why and how each species reaches a different "right size" is still largely unknown. Herein, three phylogenetically closely related catfishes from Sisoridae, including one extraordinarily large-sized Bagarius yarrelli and two aver...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20040944

    authors: Jiang W,Guo Y,Yang K,Shi Q,Yang J

    更新日期:2019-02-21 00:00:00

  • Alpha Ketoglutarate Exerts In Vitro Anti-Osteosarcoma Effects through Inhibition of Cell Proliferation, Induction of Apoptosis via the JNK and Caspase 9-Dependent Mechanism, and Suppression of TGF-β and VEGF Production and Metastatic Potential of Cells.

    abstract::Osteosarcoma (OS) is the most common type of primary bone tumor. Currently, there are limited treatment options for metastatic OS. Alpha-ketoglutarate (AKG), i.e., a multifunctional intermediate of the Krebs cycle, is one of the central metabolic regulators of tumor fate and plays an important role in cancerogenesis a...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21249406

    authors: Kaławaj K,Sławińska-Brych A,Mizerska-Kowalska M,Żurek A,Bojarska-Junak A,Kandefer-Szerszeń M,Zdzisińska B

    更新日期:2020-12-10 00:00:00

  • Unraveling the Role of Inflammation in the Pathogenesis of Diabetic Kidney Disease.

    abstract::Diabetic kidney disease (DKD) remains the leading cause of end-stage renal disease (ESRD) and is therefore a major burden on the healthcare system. Patients with DKD are highly susceptible to developing cardiovascular disease, which contributes to increased morbidity and mortality rates. While progress has been made t...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20143393

    authors: Matoba K,Takeda Y,Nagai Y,Kawanami D,Utsunomiya K,Nishimura R

    更新日期:2019-07-10 00:00:00

  • Dp71 Expression in Human Glioblastoma.

    abstract:BACKGROUND:Dp71 is the most abundant dystrophin (DMD) gene product in the nervous system. Mutation in the Dp71 coding region is associated with cognitive disturbances in Duchenne muscular dystrophy (DMD) patients, but the function of dystrophin Dp71 in tumor progression remains to be established. This study investigate...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20215429

    authors: Ruggieri S,De Giorgis M,Annese T,Tamma R,Notarangelo A,Marzullo A,Senetta R,Cassoni P,Notarangelo M,Ribatti D,Nico B

    更新日期:2019-10-31 00:00:00

  • Endothelial Semaphorin 7A promotes inflammation in seawater aspiration-induced acute lung injury.

    abstract::Inflammation is involved in the pathogenesis of seawater aspiration-induced acute lung injury (ALI). Although several studies have shown that Semaphorin 7A (SEMA7A) promotes inflammation, there are limited reports regarding immunological function of SEMA7A in seawater aspiration-induced ALI. Therefore, we investigated...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms151119650

    authors: Zhang M,Wang L,Dong M,Li Z,Jin F

    更新日期:2014-10-28 00:00:00

  • Therapeutic Potential of Antimicrobial Peptides in Polymicrobial Biofilm-Associated Infections.

    abstract::It is widely recognized that many chronic infections of the human body have a polymicrobial etiology. These include diabetic foot ulcer infections, lung infections in cystic fibrosis patients, periodontitis, otitis, urinary tract infections and even a proportion of systemic infections. The treatment of mixed infection...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms22020482

    authors: Batoni G,Maisetta G,Esin S

    更新日期:2021-01-06 00:00:00

  • Biogenesis and mechanism of action of small non-coding RNAs: insights from the point of view of structural biology.

    abstract::Non-coding RNAs are dominant in the genomic output of the higher organisms being not simply occasional transcripts with idiosyncratic functions, but constituting an extensive regulatory network. Among all the species of non-coding RNAs, small non-coding RNAs (miRNAs, siRNAs and piRNAs) have been shown to be in the cor...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms130810268

    authors: Costa MC,Leitão AL,Enguita FJ

    更新日期:2012-01-01 00:00:00

  • Could Aspirin and Diets High in Fiber Act Synergistically to Reduce the Risk of Colon Cancer in Humans?

    abstract::Early inhibition of inflammation suppresses the carcinogenic process. Aspirin is the most commonly used non-steroid anti-inflammatory drugs (NSAIDs), and it irreversibly inhibits cyclooxygenase-1 and -2 (COX1, COX2). Multiple randomized clinical trials have demonstrated that aspirin offers substantial protection from ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19010166

    authors: Pan P,Huang YW,Oshima K,Yearsley M,Zhang J,Yu J,Arnold M,Wang LS

    更新日期:2018-01-06 00:00:00

  • Coenzyme Q10 Supplementation Improves Adipokine Levels and Alleviates Inflammation and Lipid Peroxidation in Conditions of Metabolic Syndrome: A Meta-Analysis of Randomized Controlled Trials.

    abstract::Evidence from randomized controlled trials (RCTs) suggests that coenzyme Q10 (CoQ10) can regulate adipokine levels to impact inflammation and oxidative stress in conditions of metabolic syndrome. Here, prominent electronic databases such as MEDLINE, Cochrane Library, and EMBASE were searched for eligible RCTs reportin...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21093247

    authors: Dludla PV,Orlando P,Silvestri S,Marcheggiani F,Cirilli I,Nyambuya TM,Mxinwa V,Mokgalaboni K,Nkambule BB,Johnson R,Mazibuko-Mbeje SE,Muller CJF,Louw J,Tiano L

    更新日期:2020-05-04 00:00:00

  • Extracellular Vesicles, Influential Players of Intercellular Communication within Adult Neurogenic Niches.

    abstract::Adult neurogenesis, involving the generation of functional neurons from adult neural stem cells (NSCs), occurs constitutively in discrete brain regions such as hippocampus, sub-ventricular zone (SVZ) and hypothalamus. The intrinsic structural plasticity of the neurogenic process allows the adult brain to face the cont...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21228819

    authors: Losurdo M,Grilli M

    更新日期:2020-11-21 00:00:00

  • Stem cell-based neuroprotective and neurorestorative strategies.

    abstract::Stem cells, a special subset of cells derived from embryo or adult tissues, are known to present the characteristics of self-renewal, multiple lineages of differentiation, high plastic capability, and long-term maintenance. Recent reports have further suggested that neural stem cells (NSCs) derived from the adult hipp...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms11052039

    authors: Hung CW,Liou YJ,Lu SW,Tseng LM,Kao CL,Chen SJ,Chiou SH,Chang CJ

    更新日期:2010-05-05 00:00:00

  • Hsa-let-7g miRNA targets caspase-3 and inhibits the apoptosis induced by ox-LDL in endothelial cells.

    abstract::It has been well confirmed ox-LDL plays key roles in the development of atherosclerosis via binding to LOX-1 and inducing apoptosis in vascular endothelial cells. Recent studies have shown ox-LDL can suppress microRNA has-let-7g, which in turn inhibits the ox-LDL induced apoptosis. However, details need to be uncovere...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms141122708

    authors: Zhang Y,Chen N,Zhang J,Tong Y

    更新日期:2013-11-18 00:00:00

  • Transcriptome profiling and identification of transcription factors in ramie (Boehmeria nivea L. Gaud) in response to PEG treatment, using illumina paired-end sequencing technology.

    abstract::Ramie (Boehmeria nivea L. Gaud), commonly known as China grass, is a perennial bast fiber plant of the Urticaceae. In China, ramie farming, industry, and trade provide income for about five million people. Drought stress severely affects ramie stem growth and causes a dramatic decrease in ramie fiber production. There...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms16023493

    authors: An X,Chen J,Zhang J,Liao Y,Dai L,Wang B,Liu L,Peng D

    更新日期:2015-02-04 00:00:00

  • Signalling Overlaps between Nitrate and Auxin in Regulation of The Root System Architecture: Insights from the Arabidopsis thaliana.

    abstract::Nitrate (NO3-) and auxin are key regulators of root growth and development, modulating the signalling cascades in auxin-induced lateral root formation. Auxin biosynthesis, transport, and transduction are significantly altered by nitrate. A decrease in nitrate (NO3-) supply tends to promote auxin translocation from sho...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21082880

    authors: Asim M,Ullah Z,Oluwaseun A,Wang Q,Liu H

    更新日期:2020-04-20 00:00:00

  • Challenges for Super-Resolution Localization Microscopy and Biomolecular Fluorescent Nano-Probing in Cancer Research.

    abstract::Understanding molecular interactions and regulatory mechanisms in tumor initiation, progression, and treatment response are key requirements towards advanced cancer diagnosis and novel treatment procedures in personalized medicine. Beyond decoding the gene expression, malfunctioning and cancer-related epigenetic pathw...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18102066

    authors: Hausmann M,Ilić N,Pilarczyk G,Lee JH,Logeswaran A,Borroni AP,Krufczik M,Theda F,Waltrich N,Bestvater F,Hildenbrand G,Cremer C,Blank M

    更新日期:2017-09-28 00:00:00

  • Effects of Sphingosine-1-Phosphate on Cell Viability, Differentiation, and Gene Expression of Adipocytes.

    abstract::Sphingosine-1-phosphate (S1P) is a highly potent sphingolipid metabolite, which controls numerous physiological and pathological process via its extracellular and intracellular functions. The breast is mainly composed of epithelial cells (mammary gland) and adipocytes (stroma). Adipocytes play an important role in reg...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21239284

    authors: Wu X,Sakharkar MK,Wabitsch M,Yang J

    更新日期:2020-12-05 00:00:00

  • Abnormal unsaturated fatty acid metabolism in cystic fibrosis: biochemical mechanisms and clinical implications.

    abstract::Cystic fibrosis is an inherited multi-organ disorder caused by mutations in the CFTR gene. Patients with this disease exhibit characteristic abnormalities in the levels of unsaturated fatty acids in blood and tissue. Recent studies have uncovered an underlying biochemical mechanism for some of these changes, namely in...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms150916083

    authors: Seegmiller AC

    更新日期:2014-09-11 00:00:00