Spatial and temporal homogeneity of driver mutations in diffuse intrinsic pontine glioma.

Abstract:

:Diffuse Intrinsic Pontine Gliomas (DIPGs) are deadly paediatric brain tumours where needle biopsies help guide diagnosis and targeted therapies. To address spatial heterogeneity, here we analyse 134 specimens from various neuroanatomical structures of whole autopsy brains from nine DIPG patients. Evolutionary reconstruction indicates histone 3 (H3) K27M--including H3.2K27M--mutations potentially arise first and are invariably associated with specific, high-fidelity obligate partners throughout the tumour and its spread, from diagnosis to end-stage disease, suggesting mutual need for tumorigenesis. These H3K27M ubiquitously-associated mutations involve alterations in TP53 cell-cycle (TP53/PPM1D) or specific growth factor pathways (ACVR1/PIK3R1). Later oncogenic alterations arise in sub-clones and often affect the PI3K pathway. Our findings are consistent with early tumour spread outside the brainstem including the cerebrum. The spatial and temporal homogeneity of main driver mutations in DIPG implies they will be captured by limited biopsies and emphasizes the need to develop therapies specifically targeting obligate oncohistone partnerships.

journal_name

Nat Commun

journal_title

Nature communications

authors

Nikbakht H,Panditharatna E,Mikael LG,Li R,Gayden T,Osmond M,Ho CY,Kambhampati M,Hwang EI,Faury D,Siu A,Papillon-Cavanagh S,Bechet D,Ligon KL,Ellezam B,Ingram WJ,Stinson C,Moore AS,Warren KE,Karamchandani J,Packer

doi

10.1038/ncomms11185

subject

Has Abstract

pub_date

2016-04-06 00:00:00

pages

11185

issn

2041-1723

pii

ncomms11185

journal_volume

7

pub_type

杂志文章
  • Cholesterol and ORP1L-mediated ER contact sites control autophagosome transport and fusion with the endocytic pathway.

    abstract::Autophagy is the main homeostatic pathway guiding cytosolic materials for degradation by the lysosome. Maturation of autophagosomes requires their transport towards the perinuclear region of the cell, with key factors underlying both processes still poorly understood. Here we show that transport and positioning of lat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11808

    authors: Wijdeven RH,Janssen H,Nahidiazar L,Janssen L,Jalink K,Berlin I,Neefjes J

    更新日期:2016-06-10 00:00:00

  • Author Correction: Mutant p53 drives clonal hematopoiesis through modulating epigenetic pathway.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-020-17555-0

    authors: Chen S,Wang Q,Yu H,Capitano ML,Vemula S,Nabinger SC,Gao R,Yao C,Kobayashi M,Geng Z,Fahey A,Henley D,Liu SZ,Barajas S,Cai W,Wolf ER,Ramdas B,Cai Z,Gao H,Luo N,Sun Y,Wong TN,Link DC,Liu Y,Boswell HS,Mayo L

    更新日期:2020-07-28 00:00:00

  • Universal mechanical exfoliation of large-area 2D crystals.

    abstract::Two-dimensional materials provide extraordinary opportunities for exploring phenomena arising in atomically thin crystals. Beginning with the first isolation of graphene, mechanical exfoliation has been a key to provide high-quality two-dimensional materials, but despite improvements it is still limited in yield, late...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16266-w

    authors: Huang Y,Pan YH,Yang R,Bao LH,Meng L,Luo HL,Cai YQ,Liu GD,Zhao WJ,Zhou Z,Wu LM,Zhu ZL,Huang M,Liu LW,Liu L,Cheng P,Wu KH,Tian SB,Gu CZ,Shi YG,Guo YF,Cheng ZG,Hu JP,Zhao L,Yang GH,Sutter E,Sutter P,Wan

    更新日期:2020-05-15 00:00:00

  • A tunable artificial circadian clock in clock-defective mice.

    abstract::Self-sustaining oscillations are essential for diverse physiological functions such as the cell cycle, insulin secretion and circadian rhythms. Synthetic oscillators using biochemical feedback circuits have been generated in cell culture. These synthetic systems provide important insight into design principles for bio...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9587

    authors: D'Alessandro M,Beesley S,Kim JK,Chen R,Abich E,Cheng W,Yi P,Takahashi JS,Lee C

    更新日期:2015-11-30 00:00:00

  • Calcium oscillations coordinate feather mesenchymal cell movement by SHH dependent modulation of gap junction networks.

    abstract::Collective cell migration mediates multiple tissue morphogenesis processes. Yet how multi-dimensional mesenchymal cell movements are coordinated remains mostly unknown. Here we report that coordinated mesenchymal cell migration during chicken feather elongation is accompanied by dynamic changes of bioelectric currents...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07661-5

    authors: Li A,Cho JH,Reid B,Tseng CC,He L,Tan P,Yeh CY,Wu P,Li Y,Widelitz RB,Zhou Y,Zhao M,Chow RH,Chuong CM

    更新日期:2018-12-18 00:00:00

  • Urban areas as hotspots for bees and pollination but not a panacea for all insects.

    abstract::Urbanisation is an important global driver of biodiversity change, negatively impacting some species groups whilst providing opportunities for others. Yet its impact on ecosystem services is poorly investigated. Here, using a replicated experimental design, we test how Central European cities impact flying insects and...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14496-6

    authors: Theodorou P,Radzevičiūtė R,Lentendu G,Kahnt B,Husemann M,Bleidorn C,Settele J,Schweiger O,Grosse I,Wubet T,Murray TE,Paxton RJ

    更新日期:2020-01-29 00:00:00

  • The electrophotonic silicon biosensor.

    abstract::The emergence of personalized and stratified medicine requires label-free, low-cost diagnostic technology capable of monitoring multiple disease biomarkers in parallel. Silicon photonic biosensors combine high-sensitivity analysis with scalable, low-cost manufacturing, but they tend to measure only a single biomarker ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12769

    authors: Juan-Colás J,Parkin A,Dunn KE,Scullion MG,Krauss TF,Johnson SD

    更新日期:2016-09-14 00:00:00

  • Quantitative bounds on morphodynamics and implications for reading the sedimentary record.

    abstract::Sedimentary rocks are the archives of environmental conditions and ancient planetary surface processes that led to their formation. Reconstructions of Earth's past surface behaviour from the physical sedimentary record remain controversial, however, in part because we lack a quantitative framework to deconvolve intern...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4298

    authors: Ganti V,Lamb MP,McElroy B

    更新日期:2014-02-28 00:00:00

  • Global urban expansion offsets climate-driven increases in terrestrial net primary productivity.

    abstract::The global urbanization rate is accelerating; however, data limitations have far prevented robust estimations of either global urban expansion or its effects on terrestrial net primary productivity (NPP). Here, using a high resolution dataset of global land use/cover (GlobeLand30), we show that global urban areas expa...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13462-1

    authors: Liu X,Pei F,Wen Y,Li X,Wang S,Wu C,Cai Y,Wu J,Chen J,Feng K,Liu J,Hubacek K,Davis SJ,Yuan W,Yu L,Liu Z

    更新日期:2019-12-05 00:00:00

  • Wave-induced loss of ultra-relativistic electrons in the Van Allen radiation belts.

    abstract::The dipole configuration of the Earth's magnetic field allows for the trapping of highly energetic particles, which form the radiation belts. Although significant advances have been made in understanding the acceleration mechanisms in the radiation belts, the loss processes remain poorly understood. Unique observation...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12883

    authors: Shprits YY,Drozdov AY,Spasojevic M,Kellerman AC,Usanova ME,Engebretson MJ,Agapitov OV,Zhelavskaya IS,Raita TJ,Spence HE,Baker DN,Zhu H,Aseev NA

    更新日期:2016-09-28 00:00:00

  • Imaging and controlling plasmonic interference fields at buried interfaces.

    abstract::Capturing and controlling plasmons at buried interfaces with nanometre and femtosecond resolution has yet to be achieved and is critical for next generation plasmonic devices. Here we use light to excite plasmonic interference patterns at a buried metal-dielectric interface in a nanostructured thin film. Plasmons are ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13156

    authors: Lummen TTA,Lamb RJ,Berruto G,LaGrange T,Dal Negro L,García de Abajo FJ,McGrouther D,Barwick B,Carbone F

    更新日期:2016-10-11 00:00:00

  • Human NK cell development requires CD56-mediated motility and formation of the developmental synapse.

    abstract::While distinct stages of natural killer (NK) cell development have been defined, the molecular interactions that shape human NK cell maturation are poorly understood. Here we define intercellular interactions between developing NK cells and stromal cells which, through contact-dependent mechanisms, promote the generat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12171

    authors: Mace EM,Gunesch JT,Dixon A,Orange JS

    更新日期:2016-07-20 00:00:00

  • Metallo-polyelectrolytes as a class of ionic macromolecules for functional materials.

    abstract::The fields of soft polymers and macromolecular sciences have enjoyed a unique combination of metals and organic frameworks in the name of metallopolymers or organometallic polymers. When metallopolymers carry charged groups, they form a class of metal-containing polyelectrolytes or metallo-polyelectrolytes. This revie...

    journal_title:Nature communications

    pub_type: 杂志文章,评审

    doi:10.1038/s41467-018-06475-9

    authors: Zhu T,Sha Y,Yan J,Pageni P,Rahman MA,Yan Y,Tang C

    更新日期:2018-10-18 00:00:00

  • Phase and structure engineering of copper tin heterostructures for efficient electrochemical carbon dioxide reduction.

    abstract::While engineering the phase and structure of electrocatalysts could regulate the performance of many typical electrochemical processes, its importance to the carbon dioxide electroreduction has been largely unexplored. Herein, a series of phase and structure engineered copper-tin dioxide catalysts have been created an...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07419-z

    authors: Wang P,Qiao M,Shao Q,Pi Y,Zhu X,Li Y,Huang X

    更新日期:2018-11-22 00:00:00

  • CTCF orchestrates the germinal centre transcriptional program and prevents premature plasma cell differentiation.

    abstract::In germinal centres (GC) mature B cells undergo intense proliferation and immunoglobulin gene modification before they differentiate into memory B cells or long-lived plasma cells (PC). GC B-cell-to-PC transition involves a major transcriptional switch that promotes a halt in cell proliferation and the production of s...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms16067

    authors: Pérez-García A,Marina-Zárate E,Álvarez-Prado ÁF,Ligos JM,Galjart N,Ramiro AR

    更新日期:2017-07-05 00:00:00

  • Physical descriptor for the Gibbs energy of inorganic crystalline solids and temperature-dependent materials chemistry.

    abstract::The Gibbs energy, G, determines the equilibrium conditions of chemical reactions and materials stability. Despite this fundamental and ubiquitous role, G has been tabulated for only a small fraction of known inorganic compounds, impeding a comprehensive perspective on the effects of temperature and composition on mate...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06682-4

    authors: Bartel CJ,Millican SL,Deml AM,Rumptz JR,Tumas W,Weimer AW,Lany S,Stevanović V,Musgrave CB,Holder AM

    更新日期:2018-10-09 00:00:00

  • Neural processes mediating contextual influences on human choice behaviour.

    abstract::Contextual influences on choice are ubiquitous in ecological settings. Current evidence suggests that subjective values are normalized with respect to the distribution of potentially available rewards. However, how this context-sensitivity is realised in the brain remains unknown. To address this, here we examine func...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12416

    authors: Rigoli F,Friston KJ,Dolan RJ

    更新日期:2016-08-18 00:00:00

  • Secreted CLIC3 drives cancer progression through its glutathione-dependent oxidoreductase activity.

    abstract::The secretome of cancer and stromal cells generates a microenvironment that contributes to tumour cell invasion and angiogenesis. Here we compare the secretome of human mammary normal and cancer-associated fibroblasts (CAFs). We discover that the chloride intracellular channel protein 3 (CLIC3) is an abundant componen...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14206

    authors: Hernandez-Fernaud JR,Ruengeler E,Casazza A,Neilson LJ,Pulleine E,Santi A,Ismail S,Lilla S,Dhayade S,MacPherson IR,McNeish I,Ennis D,Ali H,Kugeratski FG,Al Khamici H,van den Biggelaar M,van den Berghe PV,Cloix C,McDona

    更新日期:2017-02-15 00:00:00

  • Overpumping leads to California groundwater arsenic threat.

    abstract::Water resources are being challenged to meet domestic, agricultural, and industrial needs. To complement finite surface water supplies that are being stressed by changes in precipitation and increased demand, groundwater is increasingly being used. Sustaining groundwater use requires considering both water quantity an...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04475-3

    authors: Smith R,Knight R,Fendorf S

    更新日期:2018-06-05 00:00:00

  • Printable enzyme-embedded materials for methane to methanol conversion.

    abstract::An industrial process for the selective activation of methane under mild conditions would be highly valuable for controlling emissions to the environment and for utilizing vast new sources of natural gas. The only selective catalysts for methane activation and conversion to methanol under mild conditions are methane m...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11900

    authors: Blanchette CD,Knipe JM,Stolaroff JK,DeOtte JR,Oakdale JS,Maiti A,Lenhardt JM,Sirajuddin S,Rosenzweig AC,Baker SE

    更新日期:2016-06-15 00:00:00

  • Methylation of Salmonella Typhimurium flagella promotes bacterial adhesion and host cell invasion.

    abstract::The long external filament of bacterial flagella is composed of several thousand copies of a single protein, flagellin. Here, we explore the role played by lysine methylation of flagellin in Salmonella, which requires the methylase FliB. We show that both flagellins of Salmonella enterica serovar Typhimurium, FliC and...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15738-3

    authors: Horstmann JA,Lunelli M,Cazzola H,Heidemann J,Kühne C,Steffen P,Szefs S,Rossi C,Lokareddy RK,Wang C,Lemaire L,Hughes KT,Uetrecht C,Schlüter H,Grassl GA,Stradal TEB,Rossez Y,Kolbe M,Erhardt M

    更新日期:2020-04-24 00:00:00

  • Atomic dispensers for thermoplasmonic control of alkali vapor pressure in quantum optical applications.

    abstract::Alkali metal vapors enable access to single electron systems, suitable for demonstrating fundamental light-matter interactions and promising for quantum logic operations, storage and sensing. However, progress is hampered by the need for robust and repeatable control over the atomic vapor density and over the associat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10158-4

    authors: Rusimova KR,Slavov D,Pradaux-Caggiano F,Collins JT,Gordeev SN,Carbery DR,Wadsworth WJ,Mosley PJ,Valev VK

    更新日期:2019-05-24 00:00:00

  • TAF1 plays a critical role in AML1-ETO driven leukemogenesis.

    abstract::AML1-ETO (AE) is a fusion transcription factor, generated by the t(8;21) translocation, that functions as a leukemia promoting oncogene. Here, we demonstrate that TATA-Box Binding Protein Associated Factor 1 (TAF1) associates with K43 acetylated AE and this association plays a pivotal role in the proliferation of AE-e...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-12735-z

    authors: Xu Y,Man N,Karl D,Martinez C,Liu F,Sun J,Martinez CJ,Martin GM,Beckedorff F,Lai F,Yue J,Roisman A,Greenblatt S,Duffort S,Wang L,Sun X,Figueroa M,Shiekhattar R,Nimer S

    更新日期:2019-10-29 00:00:00

  • Potassium channel-based optogenetic silencing.

    abstract::Optogenetics enables manipulation of biological processes with light at high spatio-temporal resolution to control the behavior of cells, networks, or even whole animals. In contrast to the performance of excitatory rhodopsins, the effectiveness of inhibitory optogenetic tools is still insufficient. Here we report a t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07038-8

    authors: Bernal Sierra YA,Rost BR,Pofahl M,Fernandes AM,Kopton RA,Moser S,Holtkamp D,Masala N,Beed P,Tukker JJ,Oldani S,Bönigk W,Kohl P,Baier H,Schneider-Warme F,Hegemann P,Beck H,Seifert R,Schmitz D

    更新日期:2018-11-05 00:00:00

  • Astrocytic laminin regulates pericyte differentiation and maintains blood brain barrier integrity.

    abstract::Blood brain barrier (BBB) breakdown is not only a consequence of but also contributes to many neurological disorders, including stroke and Alzheimer's disease. How the basement membrane (BM) contributes to the normal functioning of the BBB remains elusive. Here we use conditional knockout mice and an acute adenovirus-...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4413

    authors: Yao Y,Chen ZL,Norris EH,Strickland S

    更新日期:2014-03-03 00:00:00

  • Mapping of H3N2 influenza antigenic evolution in China reveals a strategy for vaccine strain recommendation.

    abstract::One of the primary efforts in influenza vaccine strain recommendation is to monitor through gene sequencing the viral surface protein haemagglutinin (HA) variants that lead to viral antigenic changes. Here we have developed a computational method, denoted as PREDAC, to predict antigenic clusters of influenza A (H3N2) ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1710

    authors: Du X,Dong L,Lan Y,Peng Y,Wu A,Zhang Y,Huang W,Wang D,Wang M,Guo Y,Shu Y,Jiang T

    更新日期:2012-02-28 00:00:00

  • Calcium stabilizes the strongest protein fold.

    abstract::Staphylococcal pathogens adhere to their human targets with exceptional resilience to mechanical stress, some propagating force to the bacterium via small, Ig-like folds called B domains. We examine the mechanical stability of these folds using atomic force microscopy-based single-molecule force spectroscopy. The forc...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07145-6

    authors: Milles LF,Unterauer EM,Nicolaus T,Gaub HE

    更新日期:2018-11-12 00:00:00

  • Structure and immunogenicity of pre-fusion-stabilized human metapneumovirus F glycoprotein.

    abstract::Human metapneumovirus (hMPV) is a frequent cause of bronchiolitis in young children. Its F glycoprotein mediates virus-cell membrane fusion and is the primary target of neutralizing antibodies. The inability to produce recombinant hMPV F glycoprotein in the metastable pre-fusion conformation has hindered structural an...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01708-9

    authors: Battles MB,Más V,Olmedillas E,Cano O,Vázquez M,Rodríguez L,Melero JA,McLellan JS

    更新日期:2017-11-16 00:00:00

  • π-phase modulated monolayer supercritical lens.

    abstract::The emerging monolayer transition metal dichalcogenides have provided an unprecedented material platform for miniaturized opto-electronic devices with integrated functionalities. Although excitonic light-matter interactions associated with their direct bandgaps have received tremendous research efforts, wavefront engi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20278-x

    authors: Qin F,Liu B,Zhu L,Lei J,Fang W,Hu D,Zhu Y,Ma W,Wang B,Shi T,Cao Y,Guan BO,Qiu CW,Lu Y,Li X

    更新日期:2021-01-04 00:00:00

  • Nanoscale membranes that chemically isolate and electronically wire up the abiotic/biotic interface.

    abstract::By electrochemically coupling microbial and abiotic catalysts, bioelectrochemical systems such as microbial electrolysis cells and microbial electrosynthesis systems synthesize energy-rich chemicals from energy-poor precursors with unmatched efficiency. However, to circumvent chemical incompatibilities between the mic...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04707-6

    authors: Cornejo JA,Sheng H,Edri E,M Ajo-Franklin C,Frei H

    更新日期:2018-06-11 00:00:00