Quantitative Structure-Activity Relationships Study on the Rate Constants of Polychlorinated Dibenzo-p-Dioxins with OH Radical.

Abstract:

:The OH-initiated reaction rate constants (kOH) are of great importance to measure atmospheric behaviors of polychlorinated dibenzo-p-dioxins (PCDDs) in the environment. The rate constants of 75 PCDDs with the OH radical at 298.15 K have been calculated using high level molecular orbital theory, and the rate constants (kα, kβ, kγ and kOH) were further analyzed by the quantitative structure-activity relationships (QSAR) study. According to the QSAR models, the relations between rate constants and the numbers and positions of Cl atoms, the energy of the highest occupied molecular orbital (EHOMO), the energy of the lowest unoccupied molecular orbital (ELUMO), the difference ΔEHOMO-LUMO between EHOMO and ELUMO, and the dipole of oxidizing agents (D) were discussed. It was found that EHOMO is the main factor in the kOH. The number of Cl atoms is more effective than the number of relative position of these Cl atoms in the kOH. The kOH decreases with the increase of the substitute number of Cl atoms.

journal_name

Int J Mol Sci

authors

Qi C,Zhang C,Sun X

doi

10.3390/ijms160818812

subject

Has Abstract

pub_date

2015-08-12 00:00:00

pages

18812-24

issue

8

issn

1422-0067

pii

ijms160818812

journal_volume

16

pub_type

杂志文章
  • Discordance of Mutation Statuses of Epidermal Growth Factor Receptor and K-ras between Primary Adenocarcinoma of Lung and Brain Metastasis.

    abstract::Mutations on epidermal growth factor receptor (EGFR) of adenocarcinomas of lung have been found to be associated with increased sensitivity to EGFR tyrosine kinase inhibitors and K-ras mutations may correlate with primary resistance. We aimed to explore the discordant mutation statuses of EGFR and K-ras between primar...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17040524

    authors: Rau KM,Chen HK,Shiu LY,Chao TL,Lo YP,Wang CC,Lin MC,Huang CC

    更新日期:2016-04-07 00:00:00

  • Integrated Transcriptional and Proteomic Profiling Reveals Potential Amino Acid Transporters Targeted by Nitrogen Limitation Adaptation.

    abstract::Nitrogen (N) is essential for plant growth and crop productivity. Organic N is a major form of remobilized N in plants' response to N limitation. It is necessary to understand the regulatory role of N limitation adaption (NLA) in organic N remobilization for this adaptive response. Transcriptional and proteomic analys...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21062171

    authors: Liao Q,Tang TJ,Zhou T,Song HX,Hua YP,Zhang ZH

    更新日期:2020-03-21 00:00:00

  • Antibody-conjugated paramagnetic nanobeads: kinetics of bead-cell binding.

    abstract::Specific labelling of target cell surfaces using antibody-conjugated paramagnetic nanobeads is essential for efficient magnetic cell separation. However, studies examining parameters determining the kinetics of bead-cell binding are scarce. The present study determines the binding rates for specific and unspecific bin...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms15058821

    authors: Waseem S,Allen MA,Schreier S,Udomsangpetch R,Bhakdi SC

    更新日期:2014-05-19 00:00:00

  • Salicylic Acid Signals Plant Defence against Cadmium Toxicity.

    abstract::Salicylic acid (SA), as an enigmatic signalling molecule in plants, has been intensively studied to elucidate its role in defence against biotic and abiotic stresses. This review focuses on recent research on the role of the SA signalling pathway in regulating cadmium (Cd) tolerance in plants under various SA exposure...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20122960

    authors: Guo B,Liu C,Liang Y,Li N,Fu Q

    更新日期:2019-06-18 00:00:00

  • Effect of Estradiol on Neurotrophin Receptors in Basal Forebrain Cholinergic Neurons: Relevance for Alzheimer's Disease.

    abstract::The basal forebrain is home to the largest population of cholinergic neurons in the brain. These neurons are involved in a number of cognitive functions including attention, learning and memory. Basal forebrain cholinergic neurons (BFCNs) are particularly vulnerable in a number of neurological diseases with the most n...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms17122122

    authors: Kwakowsky A,Milne MR,Waldvogel HJ,Faull RL

    更新日期:2016-12-17 00:00:00

  • Generation of bladder urothelium from human pluripotent stem cells under chemically defined serum- and feeder-free system.

    abstract::Human stem cells are promising sources for bladder regeneration. Among several possible sources, pluripotent stem cells are the most fascinating because they can differentiate into any cell type, and proliferate limitlessly in vitro. Here, we developed a protocol for differentiation of human pluripotent stem cells (hP...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms15057139

    authors: Kang M,Kim HH,Han YM

    更新日期:2014-04-25 00:00:00

  • Hydroxyethyl Starch 130/0.4 Binds to Neutrophils Impairing Their Chemotaxis through a Mac-1 Dependent Interaction.

    abstract::Several studies showed that hydroxyethyl starch (HES), a synthetic colloid used in volume replacement therapies, interferes with leukocyte-endothelium interactions. Although still unclear, the mechanism seems to involve the inhibition of neutrophils' integrin. With the aim to provide direct evidence of the binding of ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20040817

    authors: Trentini A,Murganti F,Rosta V,Cervellati C,Manfrinato MC,Spadaro S,Dallocchio F,Volta CA,Bellini T

    更新日期:2019-02-14 00:00:00

  • The Metabolic Fate of ortho-Quinones Derived from Catecholamine Metabolites.

    abstract::ortho-Quinones are produced in vivo through the oxidation of catecholic substrates by enzymes such as tyrosinase or by transition metal ions. Neuromelanin, a dark pigment present in the substantia nigra and locus coeruleus of the brain, is produced from dopamine (DA) and norepinephrine (NE) via an interaction with cys...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17020164

    authors: Ito S,Yamanaka Y,Ojika M,Wakamatsu K

    更新日期:2016-01-27 00:00:00

  • Non-Coding Transcriptome Maps across Twenty Tissues of the Korean Black Chicken, Yeonsan Ogye.

    abstract::Yeonsan Ogye is a rare Korean domestic chicken breed whose entire body, including feathers and skin, has a unique black coloring. Although some protein-coding genes related to this unique feature have been examined, non-coding elements have not been widely investigated. Thus, we evaluated coding and non-coding transcr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19082359

    authors: Hong H,Chai HH,Nam K,Lim D,Lee KT,Do YJ,Cho CY,Nam JW

    更新日期:2018-08-10 00:00:00

  • Male-Specific Long Noncoding RNA TTTY15 Inhibits Non-Small Cell Lung Cancer Proliferation and Metastasis via TBX4.

    abstract::Gender affects cancer susceptibility. Currently, there are only a few studies on Y chromosome-linked long noncoding RNAs (lncRNAs), and the potential association between lncRNAs and cancers in males has not been fully elucidated. Here, we examined the expression of testis-specific transcript Y-linked 15 (TTTY15) in 37...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20143473

    authors: Lai IL,Chang YS,Chan WL,Lee YT,Yen JC,Yang CA,Hung SY,Chang JG

    更新日期:2019-07-15 00:00:00

  • The Aryl Hydrocarbon Receptor in Asthma: Friend or Foe?

    abstract::The aryl hydrocarbon receptor (AhR) is a ligand-activated transcription factor that has emerged as an important player in asthma control. AhR is responsive to environmental molecules and endogenous or dietary metabolites and regulates innate and adaptive immune responses. Binding of this receptor by different ligands ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21228797

    authors: Poulain-Godefroy O,Bouté M,Carrard J,Alvarez-Simon D,Tsicopoulos A,de Nadai P

    更新日期:2020-11-20 00:00:00

  • Role of Hypoxia and Metabolism in the Development of Neointimal Hyperplasia in Arteriovenous Fistulas.

    abstract::For patients with end-stage renal disease requiring hemodialysis, their vascular access is both their lifeline and their Achilles heel. Despite being recommended as primary vascular access, the arteriovenous fistula (AVF) shows sub-optimal results, with about 50% of patients needing a revision during the year followin...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20215387

    authors: Sadaghianloo N,Contenti J,Dardik A,Mazure NM

    更新日期:2019-10-29 00:00:00

  • Parkin Coordinates Platelet Stress Response in Diabetes Mellitus: A Big Role in a Small Cell.

    abstract::Increased platelet activation and apoptosis are characteristic of diabetic (DM) platelets, where a Parkin-dependent mitophagy serves a major endogenous protective role. We now demonstrate that Parkin is highly expressed in both healthy platelets and diabetic platelets, compared to other mitochondria-enriched tissues s...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21165869

    authors: Lee SH,Du J,Hwa J,Kim WH

    更新日期:2020-08-15 00:00:00

  • The effect and mechanism of tamoxifen-induced hepatocyte steatosis in vitro.

    abstract::The aim of this study was to determine the effect and mechanism of tamoxifen (TAM)-induced steatosis in vitro. HepG 2 (Human hepatocellular liver carcinoma cell line) cells were treated with different concentrations of TAM for 72 h. Steatosis of hepatocytes was determined after Oil Red O staining and measurement of tr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms15034019

    authors: Zhao F,Xie P,Jiang J,Zhang L,An W,Zhan Y

    更新日期:2014-03-05 00:00:00

  • CSPG4 as Target for CAR-T-Cell Therapy of Various Tumor Entities-Merits and Challenges.

    abstract::Targeting cancer cells using chimeric-antigen-receptor (CAR-)T cells has propelled adoptive T-cell therapy (ATT) to the next level. A plentitude of durable complete responses using CD19-specific CAR-T cells in patients suffering from various lymphoid malignancies resulted in the approval by the food and drug administr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20235942

    authors: Harrer DC,Dörrie J,Schaft N

    更新日期:2019-11-26 00:00:00

  • Stimulation of Peritoneal Mesothelial Cells to Secrete Matrix Metalloproteinase-9 (MMP-9) by TNF-α: A Role in the Invasion of Gastric Carcinoma Cells.

    abstract::It has recently been recognized that inflammatory cytokines, such as tumor necrosis factor-α (TNF-α), upregulate the secretion of matrix metalloproteinase-9 (MMP-9) from cancer cells and thereby promote peritoneal dissemination. In this study, we found that TNF-α also stimulated peritoneal mesothelial cells to secrete...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19123961

    authors: Oku T,Shimada K,Kenmotsu H,Ando Y,Kurisaka C,Sano R,Tsuiji M,Hasegawa S,Fukui T,Tsuji T

    更新日期:2018-12-09 00:00:00

  • Cooperative Binding of KaiB to the KaiC Hexamer Ensures Accurate Circadian Clock Oscillation in Cyanobacteria.

    abstract::The central oscillator generating cyanobacterial circadian rhythms comprises KaiA, KaiB, and KaiC proteins. Their interactions cause KaiC phosphorylation and dephosphorylation cycles over approximately 24 h. KaiB interacts with phosphorylated KaiC in competition with SasA, an output protein harboring a KaiB-homologous...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20184550

    authors: Murakami R,Yunoki Y,Ishii K,Terauchi K,Uchiyama S,Yagi H,Kato K

    更新日期:2019-09-13 00:00:00

  • TPX2 is a prognostic marker and contributes to growth and metastasis of human hepatocellular carcinoma.

    abstract::Targeting protein for Xenopus kinesin-like protein 2 (TPX2), a microtubule-associated protein, impacts spindle assembly in human cells. Several studies have demonstrated that TPX2 is overexpressed in different types of human cancers and promotes tumor growth and metastasis. In this study, we found that the expression ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms151018148

    authors: Huang Y,Guo W,Kan H

    更新日期:2014-10-09 00:00:00

  • Identification of an AMPK phosphorylation site in Drosophila TSC2 (gigas) that regulate cell growth.

    abstract::AMP-activated protein kinase (AMPK) is an important metabolic regulator that mediates cellular adaptation to diverse stresses. One of the AMPK substrates, tuberous sclerosis complex 2 (TSC2), was suggested to mediate AMPK-induced silencing of mTOR complex 1 (mTORC1) signaling that is critical for cell growth. However,...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms16047015

    authors: Kim M,Lee JH

    更新日期:2015-03-27 00:00:00

  • Optimization of a WGA-Free Molecular Tagging-Based NGS Protocol for CTCs Mutational Profiling.

    abstract::Molecular characterization of Circulating Tumor Cells (CTCs) is still challenging, despite attempts to minimize the drawbacks of Whole Genome Amplification (WGA). In this paper, we propose a Next-Generation Sequencing (NGS) optimized protocol based on molecular tagging technology, in order to detect CTCs mutations whi...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21124364

    authors: De Luca G,Cardinali B,Del Mastro L,Lastraioli S,Carli F,Ferrarini M,Calin GA,Garuti A,Mazzitelli C,Zupo S,Dono M

    更新日期:2020-06-19 00:00:00

  • Cell-biomaterial mechanical interaction in the framework of tissue engineering: insights, computational modeling and perspectives.

    abstract::Tissue engineering is an emerging field of research which combines the use of cell-seeded biomaterials both in vitro and/or in vivo with the aim of promoting new tissue formation or regeneration. In this context, how cells colonize and interact with the biomaterial is critical in order to get a functional tissue engin...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms12118217

    authors: Sanz-Herrera JA,Reina-Romo E

    更新日期:2011-01-01 00:00:00

  • Matrix-assisted laser desorption/ionization imaging mass spectrometry.

    abstract::Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) is a powerful tool that enables the simultaneous detection and identification of biomolecules in analytes. MALDI-imaging mass spectrometry (MALDI-IMS) is a two-dimensional MALDI-mass spectrometric technique used to visualize the spatial distribut...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms11125040

    authors: Zaima N,Hayasaka T,Goto-Inoue N,Setou M

    更新日期:2010-01-01 00:00:00

  • Phytochemicals Targeting Estrogen Receptors: Beneficial Rather Than Adverse Effects?

    abstract::In mammals, the effects of estrogen are mainly mediated by two different estrogen receptors, ERα and ERβ. These proteins are members of the nuclear receptor family, characterized by distinct structural and functional domains, and participate in the regulation of different biological processes, including cell growth, s...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18071381

    authors: Lecomte S,Demay F,Ferrière F,Pakdel F

    更新日期:2017-06-28 00:00:00

  • The Autophagy Status of Cancer Stem Cells in Gliobastoma Multiforme: From Cancer Promotion to Therapeutic Strategies.

    abstract::Glioblastoma multiforme (GBM) is the most common and aggressive primary brain tumor featuring rapid cell proliferation, treatment resistance, and tumor relapse. This is largely due to the coexistence of heterogeneous tumor cell populations with different grades of differentiation, and in particular, to a small subset ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20153824

    authors: Ryskalin L,Gaglione A,Limanaqi F,Biagioni F,Familiari P,Frati A,Esposito V,Fornai F

    更新日期:2019-08-05 00:00:00

  • Ocular Albinism Type 1 Regulates Melanogenesis in Mouse Melanocytes.

    abstract::To investigate whether ocular albinism type 1 (OA1) is differentially expressed in the skin of mice with different coat colors and to determine its correlation with coat color establishment in mouse, the expression patterns and tissue distribution characterization of OA1 in the skin of mice with different coat colors ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17101596

    authors: Chen T,Wang H,Liu Y,Zhao B,Zhao Y,Fan R,Wang P,Dong C

    更新日期:2016-09-27 00:00:00

  • Targeting the Ubiquitin Signaling Cascade in Tumor Microenvironment for Cancer Therapy.

    abstract::Tumor microenvironments are composed of a myriad of elements, both cellular (immune cells, cancer-associated fibroblasts, mesenchymal stem cells, etc.) and non-cellular (extracellular matrix, cytokines, growth factors, etc.), which collectively provide a permissive environment enabling tumor progression. In this revie...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms22020791

    authors: Liu Q,Aminu B,Roscow O,Zhang W

    更新日期:2021-01-14 00:00:00

  • The characterisation of pluripotent and multipotent stem cells using Fourier transform infrared microspectroscopy.

    abstract::Fourier transform infrared (FTIR) microspectroscopy shows potential as a benign, objective and rapid tool to screen pluripotent and multipotent stem cells for clinical use. It offers a new experimental approach that provides a holistic measurement of macromolecular composition such that a signature representing the in...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms140917453

    authors: Cao J,Ng ES,McNaughton D,Stanley EG,Elefanty AG,Tobin MJ,Heraud P

    更新日期:2013-08-26 00:00:00

  • Platelet Proteasome Activity and Metabolism Is Upregulated during Bacterial Sepsis.

    abstract::Dysregulation of platelet function can contribute to the disease progression in sepsis. The proteasome represents a critical and vital element of cellular protein metabolism in platelets and its proteolytic activity has been associated with platelet function. However, the role of the platelet proteasome as well as its...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20235961

    authors: Grundler Groterhorst K,Mannell H,Pircher J,Kraemer BF

    更新日期:2019-11-27 00:00:00

  • Lipopolysaccharide-Preconditioned Periodontal Ligament Stem Cells Induce M1 Polarization of Macrophages through Extracellular Vesicles.

    abstract::Periodontitis is a common disease characterized by chronic inflammation and tissue destruction of gums. Human periodontal ligament stem cells (PDLSCs), derived from the periodontium, have stem cell properties similar to those of mesenchymal stem cells. PDLSCs possess not only the potential to differentiate into other ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19123843

    authors: Kang H,Lee MJ,Park SJ,Lee MS

    更新日期:2018-12-03 00:00:00

  • The Roles of Cyclin-Dependent Kinases in Cell-Cycle Progression and Therapeutic Strategies in Human Breast Cancer.

    abstract::Cyclin-dependent kinases (CDKs) are serine/threonine kinases whose catalytic activities are regulated by interactions with cyclins and CDK inhibitors (CKIs). CDKs are key regulatory enzymes involved in cell proliferation through regulating cell-cycle checkpoints and transcriptional events in response to extracellular ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21061960

    authors: Ding L,Cao J,Lin W,Chen H,Xiong X,Ao H,Yu M,Lin J,Cui Q

    更新日期:2020-03-13 00:00:00