The pathogenic human Torsin A in Drosophila activates the unfolded protein response and increases susceptibility to oxidative stress.

Abstract:

BACKGROUND:Dystonia1 (DYT1) dystonia is caused by a glutamic acid deletion (ΔE) mutation in the gene encoding Torsin A in humans (HTorA). To investigate the unknown molecular and cellular mechanisms underlying DYT1 dystonia, we performed an unbiased proteomic analysis. RESULTS:We found that the amount of proteins and transcripts of an Endoplasmic reticulum (ER) resident chaperone Heat shock protein cognate 3 (HSC3) and a mitochondria chaperone Heat Shock Protein 22 (HSP22) were significantly increased in the HTorA(ΔE)- expressing brains compared to the normal HTorA (HTorA(WT)) expressing brains. The physiological consequences included an increased susceptibility to oxidative and ER stress compared to normal HTorA(WT) flies. The alteration of transcripts of Inositol-requiring enzyme-1 (IRE1)-dependent spliced X box binding protein 1(Xbp1), several ER chaperones, a nucleotide exchange factor, Autophagy related protein 8b (ATG8b) and components of the ER associated degradation (ERAD) pathway and increased expression of the Xbp1-enhanced Green Fluorescence Protein (eGFP) in HTorA(ΔE) brains strongly indicated the activation of the unfolded protein response (UPR). In addition, perturbed expression of the UPR sensors and inducers in the HTorA(ΔE) Drosophila brains resulted in a significantly reduced life span of the flies. Furthermore, the types and quantities of proteins present in the anti-HSC3 positive microsomes in the HTorA(ΔE) brains were different from those of the HTorA(WT) brains. CONCLUSION:Taken together, these data show that HTorA(ΔE) in Drosophila brains may activate the UPR and increase the expression of HSP22 to compensate for the toxic effects caused by HTorA(ΔE) in the brains.

journal_name

BMC Genomics

journal_title

BMC genomics

authors

Kim AY,Seo JB,Kim WT,Choi HJ,Kim SY,Morrow G,Tanguay RM,Steller H,Koh YH

doi

10.1186/s12864-015-1518-0

subject

Has Abstract

pub_date

2015-04-23 00:00:00

pages

338

issn

1471-2164

pii

10.1186/s12864-015-1518-0

journal_volume

16

pub_type

杂志文章
  • The transcriptional landscape of mouse beta cells compared to human beta cells reveals notable species differences in long non-coding RNA and protein-coding gene expression.

    abstract:BACKGROUND:Insulin producing beta cell and glucagon producing alpha cells are colocalized in pancreatic islets in an arrangement that facilitates the coordinated release of the two principal hormones that regulate glucose homeostasis and prevent both hypoglycemia and diabetes. However, this intricate organization has a...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-15-620

    authors: Benner C,van der Meulen T,Cacéres E,Tigyi K,Donaldson CJ,Huising MO

    更新日期:2014-07-22 00:00:00

  • Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly species.

    abstract:BACKGROUND:The gut of phloem feeding insects is critical for nutrition uptake and xenobiotics degradation. However, partly due to its tiny size, genomic information for the gut of phloem feeding insects is limited. RESULTS:In this study, the gut transcriptomes of two species of invasive whiteflies in the Bemisia tabac...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-15-370

    authors: Ye XD,Su YL,Zhao QY,Xia WQ,Liu SS,Wang XW

    更新日期:2014-05-15 00:00:00

  • Development of simple sequence repeat (SSR) markers from a genome survey of Chinese bayberry (Myrica rubra).

    abstract:BACKGROUND:Chinese bayberry (Myrica rubra Sieb. and Zucc.) is a subtropical evergreen tree originating in China. It has been cultivated in southern China for several thousand years, and annual production has reached 1.1 million tons. The taste and high level of health promoting characters identified in the fruit in rec...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-13-201

    authors: Jiao Y,Jia HM,Li XW,Chai ML,Jia HJ,Chen Z,Wang GY,Chai CY,van de Weg E,Gao ZS

    更新日期:2012-05-23 00:00:00

  • Predicting chemical bioavailability using microarray gene expression data and regression modeling: A tale of three explosive compounds.

    abstract:BACKGROUND:Chemical bioavailability is an important dose metric in environmental risk assessment. Although many approaches have been used to evaluate bioavailability, not a single approach is free from limitations. Previously, we developed a new genomics-based approach that integrated microarray technology and regressi...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-016-2541-5

    authors: Gong P,Nan X,Barker ND,Boyd RE,Chen Y,Wilkins DE,Johnson DR,Suedel BC,Perkins EJ

    更新日期:2016-03-08 00:00:00

  • L-lactate induces specific genome wide alterations of gene expression in cultured bovine granulosa cells.

    abstract:BACKGROUND:Previously, we could show that L-lactate affects cultured bovine granulosa cells (GC) in a specific manner driving the cells into an early pre-ovulatory phenotype. Here we studied genome wide effects in L-lactate-treated GC to further elucidate the underlying mechanisms that are responsible for the L-lactate...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-019-5657-6

    authors: Baufeld A,Koczan D,Vanselow J

    更新日期:2019-04-05 00:00:00

  • Genetics and mapping of a new anthracnose resistance locus in Andean common bean Paloma.

    abstract:BACKGROUND:The Andean cultivar Paloma is resistant to Mesoamerican and Andean races of Colletotrichum lindemuthianum, the fungal pathogen that causes the destructive anthracnose disease in common bean. Remarkably, Paloma is resistant to Mesoamerican races 2047 and 3481, which are among the most virulent races of the an...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-017-3685-7

    authors: de Lima Castro SA,Gonçalves-Vidigal MC,Gilio TAS,Lacanallo GF,Valentini G,da Silva Ramos Martins V,Song Q,Galván MZ,Hurtado-Gonzales OP,Pastor-Corrales MA

    更新日期:2017-04-18 00:00:00

  • Whole genome and exome sequencing of monozygotic twins discordant for Crohn's disease.

    abstract:BACKGROUND:Crohn's disease (CD) is an inflammatory bowel disease caused by genetic and environmental factors. More than 160 susceptibility loci have been identified for IBD, yet a large part of the genetic variance remains unexplained. Recent studies have demonstrated genetic differences between monozygotic twins, who ...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-15-564

    authors: Petersen BS,Spehlmann ME,Raedler A,Stade B,Thomsen I,Rabionet R,Rosenstiel P,Schreiber S,Franke A

    更新日期:2014-07-05 00:00:00

  • Unravelling the complex trait of harvest index in rapeseed (Brassica napus L.) with association mapping.

    abstract:BACKGROUND:Harvest index (HI), the ratio of grain yield to total biomass, is considered as a measure of biological success in partitioning assimilated photosynthate to the harvestable product. While crop production can be dramatically improved by increasing HI, the underlying molecular genetic mechanism of HI in rapese...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-015-1607-0

    authors: Luo X,Ma C,Yue Y,Hu K,Li Y,Duan Z,Wu M,Tu J,Shen J,Yi B,Fu T

    更新日期:2015-05-12 00:00:00

  • Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing.

    abstract:BACKGROUND:Glandular trichomes produce a wide variety of commercially important secondary metabolites in many plant species. The most prominent anti-malarial drug artemisinin, a sesquiterpene lactone, is produced in glandular trichomes of Artemisia annua. However, only limited genomic information is currently available...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-10-465

    authors: Wang W,Wang Y,Zhang Q,Qi Y,Guo D

    更新日期:2009-10-09 00:00:00

  • A high-throughput screening strategy for detecting CRISPR-Cas9 induced mutations using next-generation sequencing.

    abstract:BACKGROUND:CRISPR-Cas9 is a revolutionary genome editing technique that allows for efficient and directed alterations of the eukaryotic genome. This relatively new technology has already been used in a large number of 'loss of function' experiments in cultured cells. Despite its simplicity and efficiency, screening for...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-15-1002

    authors: Bell CC,Magor GW,Gillinder KR,Perkins AC

    更新日期:2014-11-20 00:00:00

  • Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats.

    abstract:BACKGROUND:Adenosine to inosine (A-to-I) RNA-editing is an essential post-transcriptional mechanism that occurs in numerous sites in the human transcriptome, mainly within Alu repeats. It has been shown to have consistent levels of editing across individuals in a few targets in the human brain and altered in several hu...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-11-608

    authors: Greenberger S,Levanon EY,Paz-Yaacov N,Barzilai A,Safran M,Osenberg S,Amariglio N,Rechavi G,Eisenberg E

    更新日期:2010-10-28 00:00:00

  • MRCNN: a deep learning model for regression of genome-wide DNA methylation.

    abstract:BACKGROUND:Determination of genome-wide DNA methylation is significant for both basic research and drug development. As a key epigenetic modification, this biochemical process can modulate gene expression to influence the cell differentiation which can possibly lead to cancer. Due to the involuted biochemical mechanism...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-019-5488-5

    authors: Tian Q,Zou J,Tang J,Fang Y,Yu Z,Fan S

    更新日期:2019-04-04 00:00:00

  • Systematic sequencing of mRNA from the Antarctic krill (Euphausia superba) and first tissue specific transcriptional signature.

    abstract:BACKGROUND:Little is known about the genome sequences of Euphausiacea (krill) although these crustaceans are abundant components of the pelagic ecosystems in all oceans and used for aquaculture and pharmaceutical industry. This study reports the results of an expressed sequence tag (EST) sequencing project from differe...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-9-45

    authors: De Pittà C,Bertolucci C,Mazzotta GM,Bernante F,Rizzo G,De Nardi B,Pallavicini A,Lanfranchi G,Costa R

    更新日期:2008-01-28 00:00:00

  • Transcriptome database resource and gene expression atlas for the rose.

    abstract:BACKGROUND:For centuries roses have been selected based on a number of traits. Little information exists on the genetic and molecular basis that contributes to these traits, mainly because information on expressed genes for this economically important ornamental plant is scarce. RESULTS:Here, we used a combination of ...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-13-638

    authors: Dubois A,Carrere S,Raymond O,Pouvreau B,Cottret L,Roccia A,Onesto JP,Sakr S,Atanassova R,Baudino S,Foucher F,Le Bris M,Gouzy J,Bendahmane M

    更新日期:2012-11-20 00:00:00

  • Cloning and characterization of the mouse Mcoln1 gene reveals an alternatively spliced transcript not seen in humans.

    abstract:BACKGROUND:Mucolipidosis type IV (MLIV) is an autosomal recessive lysosomal storage disorder characterized by severe neurologic and ophthalmologic abnormalities. Recently the MLIV gene, MCOLN1, has been identified as a new member of the transient receptor potential (TRP) cation channel superfamily. Here we report the c...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-3-3

    authors: Falardeau JL,Kennedy JC,Acierno JS Jr,Sun M,Stahl S,Goldin E,Slaugenhaupt SA

    更新日期:2002-01-01 00:00:00

  • Local hopping mobile DNA implicated in pseudogene formation and reductive evolution in an obligate cyanobacteria-plant symbiosis.

    abstract:BACKGROUND:Insertion sequences (ISs) are approximately 1 kbp long "jumping" genes found in prokaryotes. ISs encode the protein Transposase, which facilitates the excision and reinsertion of ISs in genomes, making these sequences a type of class I ("cut-and-paste") Mobile Genetic Elements. ISs are proposed to be involve...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-015-1386-7

    authors: Vigil-Stenman T,Larsson J,Nylander JA,Bergman B

    更新日期:2015-03-17 00:00:00

  • Correction to: An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes.

    abstract::ᅟ: Upon publication of the original article [1], the authors had flagged that there was an error in Fig. 1c, as the key in this figure was displaying incorrectly. The colours had not displayed in the key in the final published article, and instead appear as plain white. ...

    journal_title:BMC genomics

    pub_type: 杂志文章,已发布勘误

    doi:10.1186/s12864-018-4614-0

    authors: Hohmann N,Koch MA

    更新日期:2018-04-11 00:00:00

  • The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution.

    abstract:BACKGROUND:Large difference in cerebrum size exist between avian species and populations of the same species and is believed to reflect differences in processing power, i.e. in the speed and efficiency of processing information in this brain region. During domestication chickens developed a larger cerebrum compared to ...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-020-06908-0

    authors: Höglund A,Strempfl K,Fogelholm J,Wright D,Henriksen R

    更新日期:2020-07-29 00:00:00

  • Comparative genome analysis of Streptococcus infantarius subsp. infantarius CJ18, an African fermented camel milk isolate with adaptations to dairy environment.

    abstract:BACKGROUND:Streptococcus infantarius subsp. infantarius (Sii) belongs to the Streptococcus bovis/Streptococcus equinus complex associated with several human and animal infections. Sii is a predominant bacterium in spontaneously fermented milk products in Africa. The genome sequence of Sii strain CJ18 was compared with ...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-14-200

    authors: Jans C,Follador R,Hochstrasser M,Lacroix C,Meile L,Stevens MJ

    更新日期:2013-03-22 00:00:00

  • Identification of sequences common to more than one therapeutic target to treat complex diseases: simulating the high variance in sequence interactivity evolved to modulate robust phenotypes.

    abstract:BACKGROUND:Genome-wide association studies show that most human traits and diseases are caused by a combination of environmental and genetic causes, with each one of these having a relatively small effect. In contrast, most therapies based on macromolecules like antibodies, antisense oligonucleotides or peptides focus ...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-015-1727-6

    authors: Varela MA

    更新日期:2015-07-18 00:00:00

  • Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin.

    abstract:BACKGROUND:One of the most important global pathogens infecting all age groups is Streptococcus pneumoniae (the 'pneumococcus'). Pneumococci reside in the paediatric nasopharynx, where they compete for space and resources, and one competition strategy is to produce a bacteriocin (antimicrobial peptide or protein) to at...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-015-1729-4

    authors: Bogaardt C,van Tonder AJ,Brueggemann AB

    更新日期:2015-07-28 00:00:00

  • An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications.

    abstract:BACKGROUND:Teladorsagia circumcincta (order Strongylida) is an economically important parasitic nematode of small ruminants (including sheep and goats) in temperate climatic regions of the world. Improved insights into the molecular biology of this parasite could underpin alternative methods required to control this an...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-13-S7-S10

    authors: Menon R,Gasser RB,Mitreva M,Ranganathan S

    更新日期:2012-01-01 00:00:00

  • Comparative analysis of the silk gland transcriptomes between the domestic and wild silkworms.

    abstract:BACKGROUND:Bombyx mori was domesticated from the Chinese wild silkworm, Bombyx mandarina. Wild and domestic silkworms are good models in which to investigate genes related to silk protein synthesis that may be differentially expressed in silk glands, because their silk productions are very different. Here we used the m...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-015-1287-9

    authors: Fang SM,Hu BL,Zhou QZ,Yu QY,Zhang Z

    更新日期:2015-02-06 00:00:00

  • Conserved alternative and antisense transcripts at the programmed cell death 2 locus.

    abstract:BACKGROUND:The programmed cell death 2 (Pdcd2) gene on mouse chromosome 17 was evaluated as a member of a highly conserved synteny, a candidate for an imprinted locus, and a candidate for the Hybrid sterility 1 (Hst1) gene. RESULTS:New mouse transcripts were identified at this locus: an alternative Pdcd2 mRNA skipping...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-8-20

    authors: Mihola O,Forejt J,Trachtulec Z

    更新日期:2007-01-18 00:00:00

  • Gene content dissimilarity for subclassification of highly similar microbial strains.

    abstract:BACKGROUND:Identification and classification of highly similar microbial strains is a challenging issue in microbiology, ecology and evolutionary biology. Among various available approaches, gene content analysis is also at the core of microbial taxonomy. However, no threshold has been determined for grouping microorgn...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-016-2991-9

    authors: Tu Q,Lin L

    更新日期:2016-08-17 00:00:00

  • Colorectal cancer cell-derived microvesicles are enriched in cell cycle-related mRNAs that promote proliferation of endothelial cells.

    abstract:BACKGROUND:Various cancer cells, including those of colorectal cancer (CRC), release microvesicles (exosomes) into surrounding tissues and peripheral circulation. These microvesicles can mediate communication between cells and affect various tumor-related processes in their target cells. RESULTS:We present potential r...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-10-556

    authors: Hong BS,Cho JH,Kim H,Choi EJ,Rho S,Kim J,Kim JH,Choi DS,Kim YK,Hwang D,Gho YS

    更新日期:2009-11-25 00:00:00

  • Genetic variation and population structure of maize inbred lines adapted to the mid-altitude sub-humid maize agro-ecology of Ethiopia using single nucleotide polymorphic (SNP) markers.

    abstract:BACKGROUND:Molecular characterization is important for efficient utilization of germplasm and development of improved varieties. In the present study, we investigated the genetic purity, relatedness and population structure of 265 maize inbred lines from the Ethiopian Institute of Agricultural Research (EIAR), the Inte...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-017-4173-9

    authors: Ertiro BT,Semagn K,Das B,Olsen M,Labuschagne M,Worku M,Wegary D,Azmach G,Ogugo V,Keno T,Abebe B,Chibsa T,Menkir A

    更新日期:2017-10-12 00:00:00

  • Cytosine methylation is a conserved epigenetic feature found throughout the phylum Platyhelminthes.

    abstract:BACKGROUND:The phylum Platyhelminthes (flatworms) contains an important group of bilaterian organisms responsible for many debilitating and chronic infectious diseases of human and animal populations inhabiting the planet today. In addition to their biomedical and veterinary relevance, some platyhelminths are also freq...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-14-462

    authors: Geyer KK,Chalmers IW,Mackintosh N,Hirst JE,Geoghegan R,Badets M,Brophy PM,Brehm K,Hoffmann KF

    更新日期:2013-07-09 00:00:00

  • Autocorrelation analysis reveals widespread spatial biases in microarray experiments.

    abstract:BACKGROUND:DNA microarrays provide the ability to interrogate multiple genes in a single experiment and have revolutionized genomic research. However, the microarray technology suffers from various forms of biases and relatively low reproducibility. A particular source of false data has been described, in which non-ran...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-8-164

    authors: Koren A,Tirosh I,Barkai N

    更新日期:2007-06-12 00:00:00

  • Genome-wide analysis of the effect of histone modifications on the coexpression of neighboring genes in Saccharomyces cerevisiae.

    abstract:BACKGROUND:Neighboring gene pairs in the genome of Saccharomyces cerevisiae have a tendency to be expressed at the same time. The distribution of histone modifications along chromatin fibers is suggested to be an important mechanism responsible for such coexpression. However, the extent of the contribution of histone m...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-11-550

    authors: Deng Y,Dai X,Xiang Q,Dai Z,He C,Wang J,Feng J

    更新日期:2010-10-09 00:00:00