Aberrant Single Exon Skipping is not Altered by Age in Exons of NF1, RABAC1, AATF or PCGF2 in Human Blood Cells and Fibroblasts.

Abstract:

:In human pre-mRNA splicing, infrequent errors occur resulting in erroneous splice products as shown in a genome-wide approach. One characteristic subgroup consists of products lacking one cassette exon. The noise in the splicing process, represented by those misspliced products, can be increased by cold shock treatment or by inhibiting the nonsense mediated decay. Here, we investigated whether the splicing noise frequency increases with age in vivo in peripheral bloods cells or in vitro in cultured and aged fibroblasts from healthy donors. Splicing noise frequency was measured for four erroneously skipped NF1 exons and one exon of RABAC1, AATF and PCGF2 by RT-qPCR. Measurements were validated in cultured fibroblasts treated with cold shock or puromycin. Intragenic but not interpersonal differences were detected in splicing noise frequencies in vivo in peripheral blood cells of 11 healthy donors (15 y-85 y) and in in vitro senescent fibroblasts from three further donors. No correlation to the age of the donors was found in the splicing noise frequencies. Our data demonstrates that splicing error frequencies are not altered by age in peripheral blood cells or in vitro aged fibroblasts in the tested exons of the four investigated genes, indicating a high importance of correct splicing in these proliferating aged cells.

journal_name

Genes (Basel)

journal_title

Genes

authors

Mellert K,Uhl M,Högel J,Lamla M,Kemkemer R,Kaufmann D

doi

10.3390/genes2030562

subject

Has Abstract

pub_date

2011-08-02 00:00:00

pages

562-77

issue

3

issn

2073-4425

pii

genes2030562

journal_volume

2

pub_type

杂志文章

相关文献

Genes文献大全
  • Evolutionary Insights of the ZW Sex Chromosomesin Snakes: A New Chapter Added by the AmazonianPuffing Snakes of the Genus Spilotes.

    abstract::Amazonian puffing snakes (Spilotes; Colubridae) are snakes widely distributed in the Neotropical region. However, chromosomal data are scarce in this group and, when available, are only limited to karyotype description using conventional staining. In this paper, we focused on the process of karyotype evolution and tre...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10040288

    authors: Viana PF,Ezaz T,de Bello Cioffi M,Jackson Almeida B,Feldberg E

    更新日期:2019-04-09 00:00:00

  • The Draft Genome of the Endangered Sichuan Partridge (Arborophila rufipectus) with Evolutionary Implications.

    abstract::The Sichuan partridge (Arborophila rufipectus, Phasianidae, Galliformes) is distributed in south-west China, and classified as endangered grade. To examine the evolution and genomic features of Sichuan partridge, we de novo assembled the Sichuan partridge reference genome. The final draft assembly consisted of approxi...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10090677

    authors: Zhou C,Tu H,Yu H,Zheng S,Dai B,Price M,Wu Y,Yang N,Yue B,Meng Y

    更新日期:2019-09-05 00:00:00

  • Genetic Diversity, Population Structure, and Parentage Analysis of Croatian Grapevine Germplasm.

    abstract::Croatian viticulture was most extensive at the beginning of the 20th century, when about 400 varieties were in use. Autochthonous varieties are the result of spontaneous hybridization from the pre-phylloxera era and are still cultivated today on about 35 % of vineyard area, while some exist only in repositories. We pr...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11070737

    authors: Žulj Mihaljević M,Maletić E,Preiner D,Zdunić G,Bubola M,Zyprian E,Pejić I

    更新日期:2020-07-02 00:00:00

  • Transcriptome Changes during Major Developmental Transitions Accompanied with Little Alteration of DNA Methylome in Two Pleurotus Species.

    abstract::Pleurotus tuoliensis (Pt) and P. eryngii var. eryngii (Pe) are important edible mushrooms. The epigenetic and gene expression signatures characterizing major developmental transitions in these two mushrooms remain largely unknown. Here, we report global analyses of DNA methylation and gene expression in both mushrooms...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10060465

    authors: Wen J,Zhang Z,Gong L,Xun H,Li J,Qi B,Wang Q,Li X,Li Y,Liu B

    更新日期:2019-06-17 00:00:00

  • Comprehensive Transcriptomic Analysis Identifies ST8SIA1 as a Survival-Related Sialyltransferase Gene in Breast Cancer.

    abstract::Hypersialylation caused by the overexpression of sialyltransferases (STs) is a common feature in cancer that is associated with several characteristics of tumorigenesis. Thus, identifying cancer-associated STs is critical for cancer therapy. However, ST screening has been frequently conducted in cell line models. In t...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11121436

    authors: Kan JY,Moi SH,Hung WC,Hou MF,Chen FM,Shih SL,Shiau JP,Li CL,Chiang CP

    更新日期:2020-11-28 00:00:00

  • The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis.

    abstract::The grizzly bear (Ursus arctos ssp. horribilis) represents the largest population of brown bears in North America. Its genome was sequenced using a microfluidic partitioning library construction technique, and these data were supplemented with sequencing from a nanopore-based long read platform. The final assembly was...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9120598

    authors: Taylor GA,Kirk H,Coombe L,Jackman SD,Chu J,Tse K,Cheng D,Chuah E,Pandoh P,Carlsen R,Zhao Y,Mungall AJ,Moore R,Birol I,Franke M,Marra MA,Dutton C,Jones SJM

    更新日期:2018-11-30 00:00:00

  • Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.

    abstract::Illumina and nanopore sequencing technologies are powerful tools that can be used to determine the bacterial composition of complex microbial communities. In this study, we compared nasal microbiota results at genus level using both Illumina and nanopore 16S rRNA gene sequencing. We also monitored the progression of n...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11091105

    authors: Heikema AP,Horst-Kreft D,Boers SA,Jansen R,Hiltemann SD,de Koning W,Kraaij R,de Ridder MAJ,van Houten CB,Bont LJ,Stubbs AP,Hays JP

    更新日期:2020-09-21 00:00:00

  • Horizontally Acquired Homologs of Xenogeneic Silencers: Modulators of Gene Expression Encoded by Plasmids, Phages and Genomic Islands.

    abstract::Acquisition of mobile elements by horizontal gene transfer can play a major role in bacterial adaptation and genome evolution by providing traits that contribute to bacterial fitness. However, gaining foreign DNA can also impose significant fitness costs to the host bacteria and can even produce detrimental effects. T...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes11020142

    authors: Piña-Iturbe A,Suazo ID,Hoppe-Elsholz G,Ulloa-Allendes D,González PA,Kalergis AM,Bueno SM

    更新日期:2020-01-29 00:00:00

  • Slow Adaptive Response of Budding Yeast Cells to Stable Conditions of Continuous Culture Can Occur without Genome Modifications.

    abstract::Continuous cultures assure the invariability of environmental conditions and the metabolic state of cultured microorganisms, whereas batch-cultured cells undergo constant changes in nutrients availability. For that reason, continuous culture is sometimes employed in the whole transcriptome, whole proteome, or whole me...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11121419

    authors: Klim J,Zielenkiewicz U,Kurlandzka A,Kaczanowski S,Skoneczny M

    更新日期:2020-11-27 00:00:00

  • Eco-Evolutionary Feedbacks and the Maintenance of Metacommunity Diversity in a Changing Environment.

    abstract::The presence and strength of resource competition can influence how organisms adaptively respond to environmental change. Selection may thus reflect a balance between two forces, adaptation to an environmental optimum and evolution to avoid strong competition. While this phenomenon has previously been explored in the ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11121433

    authors: Fielding AP,Pantel JH

    更新日期:2020-11-28 00:00:00

  • Role of Homologous Recombination Genes in Repair of Alkylation Base Damage by Candida albicans.

    abstract::Candida albicans mutants deficient in homologous recombination (HR) are extremely sensitive to the alkylating agent methyl-methane-sulfonate (MMS). Here, we have investigated the role of HR genes in the protection and repair of C. albicans chromosomes by taking advantage of the heat-labile property (55 °C) of MMS-indu...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9090447

    authors: Ciudad T,Bellido A,Andaluz E,Hermosa B,Larriba G

    更新日期:2018-09-07 00:00:00

  • Characterization of Copy-Number Variations and Possible Candidate Genes in Recurrent Pregnancy Losses.

    abstract::It is well established that embryonic chromosomal abnormalities (both in the number of chromosomes and the structure) account for 50% of early pregnancy losses. However, little is known regarding the potential differences in the incidence and distribution of chromosomal abnormalities between patients with sporadic abo...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes12020141

    authors: Sheng YR,Hou SY,Hu WT,Wei CY,Liu YK,Liu YY,Jiang L,Xiang JJ,Sun XX,Lei CX,Wang HL,Zhu XY

    更新日期:2021-01-22 00:00:00

  • Embedded Disposable Functionalized Electrochemical Biosensor with a 3D-Printed Flow Cell for Detection of Hepatic Oval Cells (HOCs).

    abstract::Hepatic oval cells (HOCs) are considered the progeny of the intrahepatic stem cells that are found in a small population in the liver after hepatocyte proliferation is inhibited. Due to their small number, isolation and capture of these cells constitute a challenging task for immunosensor technology. This work describ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9020089

    authors: Damiati S,Peacock M,Leonhardt S,Damiati L,Baghdadi MA,Becker H,Kodzius R,Schuster B

    更新日期:2018-02-14 00:00:00

  • Suppression of Notch Signaling Stimulates Progesterone Synthesis by Enhancing the Expression of NR5A2 and NR2F2 in Porcine Granulosa Cells.

    abstract::The conserved Notch pathway is reported to be involved in progesterone synthesis and secretion; however, the exact effects remain controversial. To determine the role and potential mechanisms of the Notch signaling pathway in progesterone biosynthesis in porcine granulosa cells (pGCs), we first used a pharmacological ...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11020120

    authors: Guo R,Chen F,Shi Z

    更新日期:2020-01-22 00:00:00

  • Neo-Domestication of an Interspecific Tetraploid Helianthus annuus × Helianthus tuberous Population That Segregates for Perennial Habit.

    abstract::Perennial agriculture has been proposed as an option to improve the sustainability of cropping systems, by increasing the efficiency of resource use, while also providing ecosystem services. Neo-domestication, the contemporary domestication of plants that have not previously been used in agriculture, can be used to ge...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9090422

    authors: Kantar MB,Hüber S,Herman A,Bock DG,Baute G,Betts K,Ott M,Brandvain Y,Wyse D,Stupar RM,Rieseberg LH

    更新日期:2018-08-21 00:00:00

  • Nucleolar Expression and Chromosomal Associations in Robertsonian Spermatocytes of Mus musculus domesticus.

    abstract::We studied and compared the nucleolar expression or nucleoli from specific bivalents in spermatocytes of the standard Mus musculus domesticus 2n=40, of Robertsonian (Rb) homozygotes 2n = 24 and heterozygotes 2n = 32. We analyzed 200 nuclear microspreads of each specific nucleolar chromosome and spermatocyte karyotype,...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10020120

    authors: López-Moncada F,Tapia D,Zuñiga N,Ayarza E,López-Fenner J,Redi CA,Berríos S

    更新日期:2019-02-06 00:00:00

  • The Most Important Virulence Markers of Yersinia enterocolitica and Their Role during Infection.

    abstract::Yersinia enterocolitica is the causative agent of yersiniosis, a zoonotic disease of growing epidemiological importance with significant consequences for public health. This pathogenic species has been intensively studied for many years. Six biotypes (1A, 1B, 2, 3, 4, 5) and more than 70 serotypes of Y. enterocolitica...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes9050235

    authors: Bancerz-Kisiel A,Pieczywek M,Łada P,Szweda W

    更新日期:2018-05-03 00:00:00

  • DynSig: Modelling Dynamic Signaling Alterations along Gene Pathways for Identifying Differential Pathways.

    abstract::Although a number of methods have been proposed for identifying differentially expressed pathways (DEPs), few efforts consider the dynamic components of pathway networks, i.e., gene links. We here propose a signaling dynamics detection method for identification of DEPs, DynSig, which detects the molecular signaling ch...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes9070323

    authors: Shi M,Chong Y,Shen W,Xie XP,Wang HQ

    更新日期:2018-06-27 00:00:00

  • The Variant rs1784042 of the SIDT2 Gene is Associated with Metabolic Syndrome through Low HDL-c Levels in a Mexican Population.

    abstract::The Mexican population has one of the highest prevalences of metabolic syndrome (MetS) worldwide. The aim of this study was to investigate the association of single-nucleotide polymorphisms (SNPs) with MetS and its components. First, we performed a pilot Genome-wide association study (GWAS) scan on a sub-sample derive...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11101192

    authors: León-Reyes G,Rivera-Paredez B,López JCF,Ramírez-Salazar EG,Aquino-Gálvez A,Gallegos-Carrillo K,Denova-Gutiérrez E,Salmerón J,Velázquez-Cruz R

    更新日期:2020-10-14 00:00:00

  • Ectopic Expression of AhGLK1b (GOLDEN2-like Transcription Factor) in Arabidopsis Confers Dual Resistance to Fungal and Bacterial Pathogens.

    abstract::GOLDEN2-LIKE (GLK) is a member of the myeloblastosis (MYB) family transcription factor and it plays an important role in the regulation of plastid development and stress tolerance. In this study, a gene named AhGLK1b was identified from a cultivated peanut showing down-regulation in response to low calcium with a comp...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11030343

    authors: Ali N,Chen H,Zhang C,Khan SA,Gandeka M,Xie D,Zhuang W

    更新日期:2020-03-24 00:00:00

  • Applications of Yeast Synthetic Biology Geared towards the Production of Biopharmaceuticals.

    abstract::Engineered yeast are an important production platform for the biosynthesis of high-value compounds with medical applications. Recent years have witnessed several new developments in this area, largely spurred by advances in the field of synthetic biology and the elucidation of natural metabolic pathways. This minirevi...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes9070340

    authors: Walker RSK,Pretorius IS

    更新日期:2018-07-06 00:00:00

  • The Spectrum of PAX6 Mutations and Genotype-Phenotype Correlations in the Eye.

    abstract::The transcription factor PAX6 is essential in ocular development in vertebrates, being considered the master regulator of the eye. During eye development, it is essential for the correct patterning and formation of the multi-layered optic cup and it is involved in the developing lens and corneal epithelium. In adultho...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes10121050

    authors: Lima Cunha D,Arno G,Corton M,Moosajee M

    更新日期:2019-12-17 00:00:00

  • Protein Changes in Response to Lead Stress of Lead-Tolerant and Lead-Sensitive Industrial Hemp Using SWATH Technology.

    abstract::Hemp is a Pb-tolerant and Pb-accumulating plant and the study of its tolerance mechanisms could facilitate the breeding of hemp with enhanced Pb tolerance and accumulation. In the present study, we took advantage of sequential window acquisition of all theoretical mass spectra (SWATH) technology to study the differenc...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10050396

    authors: Xia C,Hong L,Yang Y,Yanping X,Xing H,Gang D

    更新日期:2019-05-22 00:00:00

  • Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population.

    abstract::The central goal of medical genomics is to understand the inherited basis of sequence variation that underlies human physiology, evolution, and disease. Functional association studies currently ignore millions of bases that span each centromeric region and acrocentric short arm. These regions are enriched in long arra...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes10050352

    authors: Miga KH

    更新日期:2019-05-08 00:00:00

  • Identification of a Novel Imprinted Transcript in the Porcine GNAS Complex Locus Using Methylome and Transcriptome of Parthenogenetic Fetuses.

    abstract::Genomic imprinting in domestic animals contributes to the variance of performance traits. However, research remains to be done on large-scale detection of epigenetic landscape of porcine imprinted loci including the GNAS complex locus. The purpose of this study was to generate porcine parthenogenetic fetuses and compr...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes11010096

    authors: Ahn J,Wu H,Lee J,Hwang IS,Yu D,Ahn JS,Lee JW,Hwang S,Lee K

    更新日期:2020-01-14 00:00:00

  • miR-194 Accelerates Apoptosis of Aβ1⁻42-Transduced Hippocampal Neurons by Inhibiting Nrn1 and Decreasing PI3K/Akt Signaling Pathway Activity.

    abstract::This article explores the mechanism of miR-194 on the proliferation and apoptosis of Aβ1-42-transduced hippocampal neurons. Aβ1-42-transduced hippocampal neuron model was established by inducing hippocampal neurons with Aβ1-42. MTT assay and flow cytometry were used to detect the viability and apoptosis of hippocampal...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10040313

    authors: Wang T,Cheng Y,Han H,Liu J,Tian B,Liu X

    更新日期:2019-04-21 00:00:00

  • Identification and Conservation Analysis of Cis-Regulatory Elements in Pig Liver.

    abstract::The liver plays a key role in metabolism and affects pig production. However, the functional annotation of noncoding regions of the pig liver remains poorly understood. We revealed the landscape of cis-regulatory elements and their functional characterization in pig liver. We identified 102,373 cis-regulatory elements...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10050348

    authors: Luan Y,Zhang L,Hu M,Xu Y,Hou Y,Li X,Zhao S,Zhao Y,Li C

    更新日期:2019-05-07 00:00:00

  • Expanding the Clinical and Mutational Spectrum of Recessive AEBP1-Related Classical-Like Ehlers-Danlos Syndrome.

    abstract::Ehlers-Danlos syndrome (EDS) comprises clinically heterogeneous connective tissue disorders with diverse molecular etiologies. The 2017 International Classification for EDS recognized 13 distinct subtypes caused by pathogenic variants in 19 genes mainly encoding fibrillar collagens and collagen-modifying or processing...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes10020135

    authors: Ritelli M,Cinquina V,Venturini M,Pezzaioli L,Formenti AM,Chiarelli N,Colombi M

    更新日期:2019-02-12 00:00:00

  • Beyond Trees: Regulons and Regulatory Motif Characterization.

    abstract::Trees and their seeds regulate their germination, growth, and reproduction in response to environmental stimuli. These stimuli, through signal transduction, trigger transcription factors that alter the expression of various genes leading to the unfolding of the genetic program. A regulon is conceptually defined as a s...

    journal_title:Genes

    pub_type: 杂志文章,评审

    doi:10.3390/genes11090995

    authors: Xia X

    更新日期:2020-08-25 00:00:00

  • Long Non-Coding RNA NEAT1 Associates with SRp40 to Temporally Regulate PPARγ2 Splicing during Adipogenesis in 3T3-L1 Cells.

    abstract::Long non-coding (lnc) RNAs serve a multitude of functions in cells. NEAT1 RNA is a highly abundant 4 kb lncRNA in nuclei, and coincides with paraspeckles, nuclear domains that control sequestration of paraspeckle proteins. We examined NEAT1 RNA levels and its function in 3T3-L1 cells during differentiation to adipocyt...

    journal_title:Genes

    pub_type: 杂志文章

    doi:10.3390/genes5041050

    authors: Cooper DR,Carter G,Li P,Patel R,Watson JE,Patel NA

    更新日期:2014-11-27 00:00:00