Different evolutionary patterns of hypoxia-inducible factor α (HIF-α) isoforms in the basal branches of Actinopterygii and Sarcopterygii.

Abstract:

:Hypoxia-inducible factor (HIF) is a crucial regulator of cellular and systemic responses to low oxygen levels. Here we firstly cloned three HIF-α isoforms from the basal branches of Osteichthyes and used computational tools to characterise the molecular change underlying the functional divergence of HIF-α isoforms in different lineages. Only the HIF-1α and HIF-2α in African lungfish and amphibians were found under positive selection. HIF-1α and -2α were less functionally divergent in basal ray-finned fish than in teleosts, and showed conserved but different transcriptional activity towards specific target genes.

journal_name

FEBS Open Bio

journal_title

FEBS open bio

authors

Chi W,Gan X,Xiao W,Wang W,He S

doi

10.1016/j.fob.2013.09.004

subject

Has Abstract

pub_date

2013-09-19 00:00:00

pages

479-83

issn

2211-5463

pii

S2211-5463(13)00053-3

journal_volume

3

pub_type

杂志文章
  • FGF11 influences 3T3-L1 preadipocyte differentiation by modulating the expression of PPARγ regulators.

    abstract::Fibroblast growth factor 11 (FGF11) is a member of the intracellular fibroblast growth factor superfamily. Here, we identified FGF11 as a novel mediator of adipogenesis. During 3T3-L1 adipocyte differentiation, the expression of FGF11 decreased at the mitotic clonal expansion stage and increased at the terminal differ...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12619

    authors: Lee KW,Jeong JY,An YJ,Lee JH,Yim HS

    更新日期:2019-03-12 00:00:00

  • Overexpression of YB1 C-terminal domain inhibits proliferation, angiogenesis and tumorigenicity in a SK-BR-3 breast cancer xenograft mouse model.

    abstract::Y-box-binding protein 1 (YB1) is a multifunctional transcription factor with vital roles in proliferation, differentiation and apoptosis. In this study, we have examined the role of its C-terminal domain (YB1 CTD) in proliferation, angiogenesis and tumorigenicity in breast cancer. Breast cancer cell line SK-BR-3 was i...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12004

    authors: Shi JH,Cui NP,Wang S,Zhao MZ,Wang B,Wang YN,Chen BP

    更新日期:2016-01-11 00:00:00

  • Effect of curcumin on amyloid-like aggregates generated from methionine-oxidized apolipoprotein A-I.

    abstract::Curcumin is a polyphenolic phytonutrient that has antineurodegenerative properties. In this study, we investigated the anti-amyloidogenic properties of curcumin. Following incubation with curcumin, intrinsic tryptophan fluorescence emission of apolipoprotein (apo) A-I was strongly quenched. At the same time, curcumin ...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12372

    authors: Krishnamoorthy A,Tavoosi N,Chan GKL,Liu J,Ren G,Cavigiolio G,Ryan RO

    更新日期:2018-01-10 00:00:00

  • Inhibition of glycolysis disrupts cellular antioxidant defense and sensitizes HepG2 cells to doxorubicin treatment.

    abstract::Increased glucose consumption is a known hallmark of cancer cells. Increased glycolysis provides ATP, reducing agents and substrates for macromolecular synthesis in intensely dividing cells. Therefore, inhibition of glycolysis is one strategy in anticancer therapy as well as in improved efficacy of conventional antica...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12628

    authors: Korga A,Ostrowska M,Iwan M,Herbet M,Dudka J

    更新日期:2019-05-01 00:00:00

  • Identification and analysis of micro-exons in AP2/ERF and MADS gene families.

    abstract::Micro-exons are a set of ultrashort exons with lengths ≤ 51 nucleotides. Our previous study revealed that micro-exons were enriched in AP2 domains and K-box domains, which are crucial components of AP2/ERF (APETALA2/ethylene-responsive element-binding protein) and MADS-box (an acronym of MCM1, AGAMOUS, DEFICIENS and S...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12990

    authors: Song Q,Bari A,Li H,Chen LL

    更新日期:2020-12-01 00:00:00

  • Lithium chloride ameliorates cognition dysfunction induced by sevoflurane anesthesia in rats.

    abstract::Postoperative cognitive dysfunction is a common complication in elderly patients after surgeries involving anesthesia, but the underlying mechanisms are poorly understood. Lithium is a conventional treatment for bipolar disorder, which exerts a neuroprotective role in various diseases by inhibiting glycogen synthase k...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12779

    authors: Wang Y,An X,Zhang X,Liu J,Wang J,Yang Z

    更新日期:2019-12-22 00:00:00

  • Identification of potential diagnostic biomarkers for Parkinson's disease.

    abstract::The identification of biomarkers for early diagnosis of Parkinson's disease (PD) prior to the onset of symptoms may improve the effectiveness of therapy. To identify potential biomarkers, we downloaded microarray datasets of PD from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) between PD...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12687

    authors: Jiang F,Wu Q,Sun S,Bi G,Guo L

    更新日期:2019-08-01 00:00:00

  • Fruit ripening in Lycium barbarum and Lycium ruthenicum is associated with distinct gene expression patterns.

    abstract::Goji berries have been used as food and medicine for millennia. Due to their high morphological similarity, fruits of two distinct species belonging to the family Solanaceae, Lycium barbarum (LB) and Lycium chinense (Chinese boxthorn), are usually marketed together as goji berries, but nearly 90% of all commercially a...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12910

    authors: Zhao J,Li H,Yin Y,An W,Qin X,Wang Y,Fan Y,Li Y,Cao Y

    更新日期:2020-08-01 00:00:00

  • BBOX1-AS1 contributes to colorectal cancer progression by sponging hsa-miR-361-3p and targeting SH2B1.

    abstract::Colorectal cancer (CRC) is the third main cause of cancer-relevant deaths worldwide, and its incidence has increased in recent decades. Previous studies have indicated that certain long non-coding RNAs (lncRNAs) have regulatory roles in tumor occurrence and progression. Often, lncRNAs are competitive endogenous RNAs (...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12802

    authors: Liu J,Zhu J,Xiao Z,Wang X,Luo J

    更新日期:2020-01-27 00:00:00

  • Deregulation of miR-27a may contribute to canine fibroblast activation after coculture with a mast cell tumour cell line.

    abstract::The tumour microenvironment comprises a diverse range of cells, including fibroblasts, immune cells and endothelial cells, along with extracellular matrix. In particular, fibroblasts are of significant interest as these cells are reprogrammed during tumorigenesis to become cancer-associated fibroblasts (CAFs), which i...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12831

    authors: Aguilera-Rojas M,Sharbati S,Stein T,Einspanier R

    更新日期:2020-05-01 00:00:00

  • Angiotensin II type 1 receptor blocker telmisartan induces apoptosis and autophagy in adult T-cell leukemia cells.

    abstract::Adult T-cell leukemia/lymphoma (ATL), an aggressive T-cell malignancy that develops after long-term infection with human T-cell leukemia virus (HTLV-1), requires new treatments. Drug repositioning, reuse of a drug previously approved for the treatment of another condition to treat ATL, offers the possibility of reduce...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12055

    authors: Kozako T,Soeda S,Yoshimitsu M,Arima N,Kuroki A,Hirata S,Tanaka H,Imakyure O,Tone N,Honda S,Soeda S

    更新日期:2016-04-13 00:00:00

  • Epigenetic regulation of regulatory T cells in patients with abdominal aortic aneurysm.

    abstract::Abdominal arterial aneurysm (AAA) shares many features with autoimmune diseases and appears to be a T-cell-mediated process. In addition, certain epigenetic changes, including DNA methylation, are associated with AAA. In this study, we investigated epigenetic modifications in regulatory T cells (Tregs) from AAA patien...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12643

    authors: Xia Q,Zhang J,Han Y,Zhang X,Jiang H,Lun Y,Wu X,Gang Q,Liu Z,Böckler D,Duan Z,Xin S

    更新日期:2019-06-01 00:00:00

  • In vitro characterization of the RS motif in N-terminal head domain of goldfish germinal vesicle lamin B3 necessary for phosphorylation of the p34cdc2 target serine by SRPK1.

    abstract::The nuclear envelopes surrounding the oocyte germinal vesicles of lower vertebrates (fish and frog) are supported by the lamina, which consists of the protein lamin B3 encoded by a gene found also in birds but lost in the lineage leading to mammals. Like other members of the lamin family, goldfish lamin B3 (gfLB3) con...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1016/j.fob.2013.03.003

    authors: Yamaguchi A,Iwatani M,Ogawa M,Kitano H,Matsuyama M

    更新日期:2013-03-29 00:00:00

  • Transformation of the fungus Absidia glauca by complementation of a methionine-auxotrophic strain affected in the homoserine-acetyltransferase gene.

    abstract::Transformation of fungi by complementation of auxotrophs is generally much more reliable than usage of antibiotic resistance markers. In order to establish such a system for the model zygomycete Absidia glauca, a stable methionine auxotrophic mutant was isolated after X-ray mutagenesis of the minus mating type and cha...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1016/j.fob.2012.07.002

    authors: Karimi S,Wetzel J,Wöstemeyer J,Burmester A

    更新日期:2012-07-20 00:00:00

  • Structure of the C-terminal domain of AspA (antigen I/II-family) protein from Streptococcus pyogenes.

    abstract::The pathogenic bacteria Streptococcus pyogenes can cause an array of diseases in humans, including moderate infections such as pharyngitis (strep throat) as well as life threatening conditions such as necrotizing fasciitis and puerperal fever. The antigen I/II family proteins are cell wall anchored adhesin proteins fo...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1016/j.fob.2014.02.012

    authors: Hall M,Nylander S,Jenkinson HF,Persson K

    更新日期:2014-03-12 00:00:00

  • Cryo-electron microscopy visualization of a large insertion in the 5S ribosomal RNA of the extremely halophilic archaeon Halococcus morrhuae.

    abstract::The extreme halophile Halococcus morrhuae (ATCC® 17082) contains a 108-nucleotide insertion in its 5S rRNA. Large rRNA expansions in Archaea are rare. This one almost doubles the length of the 5S rRNA. In order to understand how such an insertion is accommodated in the ribosome, we obtained a cryo-electron microscopy ...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12962

    authors: Tirumalai MR,Kaelber JT,Park DR,Tran Q,Fox GE

    更新日期:2020-10-01 00:00:00

  • NFκB mediates cisplatin resistance through histone modifications in head and neck squamous cell carcinoma (HNSCC).

    abstract::Cisplatin-based chemotherapy is the standard treatment of choice for head and neck squamous cell carcinoma (HNSCC). The efficiency of platinum-based therapies is directly influenced by the development of tumor resistance. Multiple signaling pathways have been linked to tumor resistance, including activation of nuclear...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1016/j.fob.2013.12.003

    authors: Almeida LO,Abrahao AC,Rosselli-Murai LK,Giudice FS,Zagni C,Leopoldino AM,Squarize CH,Castilho RM

    更新日期:2013-12-30 00:00:00

  • Cellular calcification induced by inorganic polyphosphate involves ATP depletion and opening of the mitochondrial permeability transition pore (mPTP).

    abstract::Inorganic polyphosphate (polyP) is a linear polymer containing tens to hundreds of orthophosphate residues linked by high-energy phosphoanhydride bonds. PolyP promotes osteocalcification and bone mineralization in both mouse and human osteoblastic cells. In the present study, we examined the molecular mechanism by whi...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12703

    authors: Tsutsumi K,Sasase T

    更新日期:2019-09-01 00:00:00

  • Expression patterns of kiss2 and gpr54-2 in Monopterus albus suggest these genes may play a role in sex reversal in fish.

    abstract::Due to its exceptionally small genome size and protogynous hermaphroditism, Monopterus albus has been proposed as a model for vertebrate sexual development. The Kiss/GPR54 system is a central regulator of sexual development in most vertebrates, but its role in sex reversal remains hypothetical. In contrast to mammals,...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12727

    authors: Yi TL,Pei MT,Yang DQ

    更新日期:2019-10-01 00:00:00

  • Septal protein SepJ from the heterocyst-forming cyanobacterium Anabaena forms multimers and interacts with peptidoglycan.

    abstract::Heterocyst-forming cyanobacteria grow as filaments that can be hundreds of cells long. Proteinaceous septal junctions provide cell-cell binding and communication functions in the filament. In Anabaena sp. strain PCC 7120, the SepJ protein is important for the formation of septal junctions. SepJ consists of integral me...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12280

    authors: Ramos-León F,Mariscal V,Battchikova N,Aro EM,Flores E

    更新日期:2017-08-30 00:00:00

  • Ornithine cyclodeaminase/μ-crystallin homolog from the hyperthermophilic archaeon Thermococcus litoralis functions as a novel Δ(1)-pyrroline-2-carboxylate reductase involved in putative trans-3-hydroxy-l-proline metabolism.

    abstract::l-Ornithine cyclodeaminase (OCD) is involved in l-proline biosynthesis and catalyzes the unique deaminating cyclization of l-ornithine to l-proline via a Δ(1)-pyrroline-2-carboxyrate (Pyr2C) intermediate. Although this pathway functions in only a few bacteria, many archaea possess OCD-like genes (proteins), among whic...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1016/j.fob.2014.07.005

    authors: Watanabe S,Tozawa Y,Watanabe Y

    更新日期:2014-07-10 00:00:00

  • Proteasome inhibitors prevent cell death and prolong survival of mice challenged by Shiga toxin.

    abstract::Shiga toxin (Stx) causes fatal systemic complications. Stx induces apoptosis, but the mechanism of which is unclear. We report that Stx induced rapid reduction of short-lived anti-apoptotic proteins followed by activation of caspase 9 and the progression of apoptosis. Proteasome inhibitors prevented the reduction of a...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1016/j.fob.2015.06.005

    authors: Hattori T,Watanabe-Takahashi M,Ohoka N,Hamabata T,Furukawa K,Nishikawa K,Naito M

    更新日期:2015-06-12 00:00:00

  • Growth hormone receptor promotes breast cancer progression via the BRAF/MEK/ERK signaling pathway.

    abstract::Growth hormone receptor (GHR), a member of the class I cytokine receptor family, plays key roles in cancer progression. Recently, GHR has been reported to be associated with breast cancer development, but the molecular mechanism of GHR in this malignancy is not fully understood. To investigate this issue, we stably in...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12816

    authors: Zhu X,Li Y,Xu G,Fu C

    更新日期:2020-06-01 00:00:00

  • Interaction of Sesbania mosaic virus (SeMV) RNA-dependent RNA polymerase (RdRp) with the p10 domain of polyprotein 2a and its implications in SeMV replication.

    abstract::Identification of viral encoded proteins that interact with RNA-dependent RNA polymerase (RdRp) is an important step towards unraveling the mechanism of replication. Sesbania mosaic virus (SeMV) RdRp was shown to interact strongly with p10 domain of polyprotein 2a and moderately with the protease domain. Mutational an...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1016/j.fob.2014.03.009

    authors: Govind K,Bakshi A,Savithri HS

    更新日期:2014-03-29 00:00:00

  • A new high-resolution crystal structure of the Drosophila melanogaster angiotensin converting enzyme homologue, AnCE.

    abstract::Angiotensin converting enzyme (ACE) is a zinc-dependent dipeptidyl carboxypeptidase with an essential role in blood pressure homeostasis in mammals. ACE has long been targeted in the treatment of hypertension through ACE inhibitors, however current inhibitors are known to cause severe side effects. Therefore, there is...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1016/j.fob.2015.08.004

    authors: Harrison C,Acharya KR

    更新日期:2015-08-11 00:00:00

  • FAD influx enhances neuronal differentiation of human neural stem cells by facilitating nuclear localization of LSD1.

    abstract::Flavin adenine dinucleotide (FAD), synthesized from riboflavin, is redox cofactor in energy production and plays an important role in cell survival. More recently, riboflavin deficiency has been linked to developmental disorders, but its role in stem cell differentiation remains unclear. Here, we show that FAD treatme...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12331

    authors: Hirano K,Namihira M

    更新日期:2017-10-17 00:00:00

  • Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity.

    abstract::The gene encoding MG Orn has been identified from a metagenomic library created from the intertidal zone in Svalbard and encodes a protein of 184 amino acid residues. The mg orn gene has been cloned, recombinantly expressed in Escherichia coli, and purified to homogeneity. Biochemical characterization of the enzyme sh...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12720

    authors: Piotrowski Y,Berg K,Klebl DP,Leiros I,Larsen AN

    更新日期:2019-10-01 00:00:00

  • The high-risk HPV E6 proteins modify the activity of the eIF4E protein via the MEK/ERK and AKT/PKB pathways.

    abstract::Previous studies have proposed that the human papillomavirus (HPV) E6 oncoproteins modify the transcriptional activity of eIF4E through mechanisms dependent on p53 degradation. However, the effect of these oncoproteins on pathways regulating the activity of the eIF4E protein remains poorly understood. Hence, we invest...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12987

    authors: Morales-Garcia V,Contreras-Paredes A,Martinez-Abundis E,Gomez-Crisostomo NP,Lizano M,Hernandez-Landero F,de la Cruz-Hernandez E

    更新日期:2020-12-01 00:00:00

  • Masc-induced dosage compensation in silkworm cultured cells.

    abstract::The Masculinizer (Masc) gene encodes a CCCH-tandem zinc finger protein that controls both masculinization and dosage compensation in the silkworm Bombyx mori. We previously measured the masculinizing activity of the lepidopteran Masc proteins using B. mori ovary-derived cell line BmN-4. Here, we established an RNA-seq...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.12698

    authors: Katsuma S,Shoji K,Sugano Y,Suzuki Y,Kiuchi T

    更新日期:2019-09-01 00:00:00

  • CDR3 sequences in IgA nephropathy are shorter and exhibit reduced diversity.

    abstract::Immunoglobulin (Ig) A nephropathy (IgAN) is the most common glomerulonephritis, which is characterized by the deposition of IgA antibody in the glomerulus. Systematic dissection of immune composition may contribute to a better understanding of the alternations in the immune system in IgAN. To this end, here we applied...

    journal_title:FEBS open bio

    pub_type: 杂志文章

    doi:10.1002/2211-5463.13006

    authors: Zhang X,Zeng J,Tong Y,Zhang L,Lu X,Zhu S,Li Z

    更新日期:2020-12-01 00:00:00