How can plant DNA viruses evade siRNA-directed DNA methylation and silencing?

Abstract:

:Plants infected with DNA viruses produce massive quantities of virus-derived, 24-nucleotide short interfering RNAs (siRNAs), which can potentially direct viral DNA methylation and transcriptional silencing. However, growing evidence indicates that the circular double-stranded DNA accumulating in the nucleus for Pol II-mediated transcription of viral genes is not methylated. Hence, DNA viruses most likely evade or suppress RNA-directed DNA methylation. This review describes the specialized mechanisms of replication and silencing evasion evolved by geminiviruses and pararetoviruses, which rescue viral DNA from repressive methylation and interfere with transcriptional and post-transcriptional silencing of viral genes.

journal_name

Int J Mol Sci

authors

Pooggin MM

doi

10.3390/ijms140815233

subject

Has Abstract

pub_date

2013-07-24 00:00:00

pages

15233-59

issue

8

issn

1422-0067

pii

ijms140815233

journal_volume

14

pub_type

杂志文章,评审
  • Membrane Topological Model of Glycosyltransferases of the GT-C Superfamily.

    abstract::Glycosyltransferases that use polyisoprenol-linked donor substrates are categorized in the GT-C superfamily. In eukaryotes, they act in the endoplasmic reticulum (ER) lumen and are involved in N-glycosylation, glypiation, O-mannosylation, and C-mannosylation of proteins. We generated a membrane topology model of C-man...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20194842

    authors: Albuquerque-Wendt A,Hütte HJ,Buettner FFR,Routier FH,Bakker H

    更新日期:2019-09-29 00:00:00

  • Fusion of Mitochondria to 3-D Networks, Autophagy and Increased Organelle Contacts are Important Subcellular Hallmarks during Cold Stress in Plants.

    abstract::Low temperature stress has a severe impact on the distribution, physiology, and survival of plants in their natural habitats. While numerous studies have focused on the physiological and molecular adjustments to low temperatures, this study provides evidence that cold induced physiological responses coincide with dist...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21228753

    authors: Steiner P,Buchner O,Andosch A,Wanner G,Neuner G,Lütz-Meindl U

    更新日期:2020-11-19 00:00:00

  • Challenges for Super-Resolution Localization Microscopy and Biomolecular Fluorescent Nano-Probing in Cancer Research.

    abstract::Understanding molecular interactions and regulatory mechanisms in tumor initiation, progression, and treatment response are key requirements towards advanced cancer diagnosis and novel treatment procedures in personalized medicine. Beyond decoding the gene expression, malfunctioning and cancer-related epigenetic pathw...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18102066

    authors: Hausmann M,Ilić N,Pilarczyk G,Lee JH,Logeswaran A,Borroni AP,Krufczik M,Theda F,Waltrich N,Bestvater F,Hildenbrand G,Cremer C,Blank M

    更新日期:2017-09-28 00:00:00

  • Molecular Insight into Gut Microbiota and Rheumatoid Arthritis.

    abstract::Rheumatoid arthritis (RA) is a systemic, inflammatory, and autoimmune disorder. Gut microbiota play an important role in the etiology of RA. With the considerable progress made in next-generation sequencing techniques, the identified gut microbiota difference between RA patients and healthy individuals provides an upd...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms17030431

    authors: Wu X,He B,Liu J,Feng H,Ma Y,Li D,Guo B,Liang C,Dang L,Wang L,Tian J,Zhu H,Xiao L,Lu C,Lu A,Zhang G

    更新日期:2016-03-22 00:00:00

  • Geranylgeraniol and Neurological Impairment: Involvement of Apoptosis and Mitochondrial Morphology.

    abstract::Deregulation of the cholesterol pathway is an anomaly observed in human diseases, many of which have in common neurological involvement and unknown pathogenesis. In this study we have used Mevalonate Kinase Deficiency (MKD) as a disease-model in order to investigate the link between the deregulation of the mevalonate ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17030365

    authors: Marcuzzi A,Piscianz E,Zweyer M,Bortul R,Loganes C,Girardelli M,Baj G,Monasta L,Celeghini C

    更新日期:2016-03-11 00:00:00

  • Flavonoids and Insulin-Resistance: From Molecular Evidences to Clinical Trials.

    abstract::Insulin-resistance is one of the main factors responsible for the onset and progression of Metabolic Syndrome (MetS). Among all polyphenols, the effects of flavonoids and their main food sources on insulin sensitivity have been widely evaluated in molecular and clinical studies. The aim of this review is to analyse th...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20092061

    authors: Russo B,Picconi F,Malandrucco I,Frontoni S

    更新日期:2019-04-26 00:00:00

  • FGF21 Protects against Aggravated Blood-Brain Barrier Disruption after Ischemic Focal Stroke in Diabetic db/db Male Mice via Cerebrovascular PPARγ Activation.

    abstract::Recombinant fibroblast growth factor 21 (rFGF21) has been shown to be potently beneficial for improving long-term neurological outcomes in type 2 diabetes mellitus (T2DM) stroke mice. Here, we tested the hypothesis that rFGF21 protects against poststroke blood-brain barrier (BBB) damage in T2DM mice via peroxisome pro...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21030824

    authors: Jiang Y,Lin L,Liu N,Wang Q,Yuan J,Li Y,Chung KK,Guo S,Yu Z,Wang X

    更新日期:2020-01-28 00:00:00

  • TATA-Like Boxes in RNA Polymerase III Promoters: Requirements for Nucleotide Sequences.

    abstract::tRNA and some other non-coding RNA genes are transcribed by RNA polymerase III (pol III), due to the presence of intragenic promoter, consisting of boxes A and B spaced by 30-40 bp. Such pol III promoters, called type 2, are also intrinsic to Short Interspersed Elements (SINEs). The contribution of 5'-flanking sequenc...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21103706

    authors: Tatosyan KA,Stasenko DV,Koval AP,Gogolevskaya IK,Kramerov DA

    更新日期:2020-05-25 00:00:00

  • The Contribution of Oxidative Stress and Inflamm-Aging in Human and Equine Asthma.

    abstract::Aging is associated with a dysregulation of the immune system, leading to a general pro-inflammatory state of the organism, a process that has been named inflamm-aging. Oxidative stress has an important role in aging and in the regulation of immune responses, probably playing a role in the development of age-related d...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18122612

    authors: Bullone M,Lavoie JP

    更新日期:2017-12-05 00:00:00

  • Pyrroloquinoline Quinone Modifies Lipid Profile, but Not Insulin Sensitivity, of Palmitic Acid-Treated L6 Myotubes.

    abstract::Pyrroloquinoline quinone (PQQ) is a novel stimulator of mitochondrial biogenesis and cellular energy metabolism. This is the first study investigating regulatory mechanisms and metabolic responses underlying PQQ's action in palmitate-exposed L6 myotubes. Particularly, we assessed alterations in lipid content and compo...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21218382

    authors: Supruniuk E,Mikłosz A,Chabowski A

    更新日期:2020-11-08 00:00:00

  • Bistable switch in let-7 miRNA biogenesis pathway involving Lin28.

    abstract::miRNAs are small noncoding RNAs capable of regulating gene expression at the post-transcriptional level. A growing body of evidence demonstrated that let-7 family of miRNAs, as one of the highly conserved miRNAs, plays an important role in cell differentiation and development, as well as tumor suppressor function depe...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms151019119

    authors: Shi F,Yu W,Wang X

    更新日期:2014-10-21 00:00:00

  • Anticancer Properties of Platinum Nanoparticles and Retinoic Acid: Combination Therapy for the Treatment of Human Neuroblastoma Cancer.

    abstract::Neuroblastoma is the most common extracranial solid tumor in childhood. The different treatments available for neuroblastoma are challenged by high rates of resistance, recurrence, and progression, most notably in advanced cases and highly malignant tumors. Therefore, the development of more targeted therapies, which ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21186792

    authors: Gurunathan S,Jeyaraj M,Kang MH,Kim JH

    更新日期:2020-09-16 00:00:00

  • Development-Related miRNA Expression and Target Regulation during Staggered In Vitro Plant Regeneration of Tuxpeño VS-535 Maize Cultivar.

    abstract::In vitro plant regeneration addresses basic questions of molecular reprogramming in the absence of embryonic positional cues. The process is highly dependent on the genotype and explant characteristics. However, the regulatory mechanisms operating during organ differentiation from in vitro cultures remain largely unkn...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20092079

    authors: López-Ruiz BA,Juárez-González VT,Sandoval-Zapotitla E,Dinkova TD

    更新日期:2019-04-27 00:00:00

  • Influence of ABO Locus on PFA-100 Collagen-ADP Closure Time Is Not Totally Dependent on the Von Willebrand Factor. Results of a GWAS on GAIT-2 Project Phenotypes.

    abstract::(1) Background: In a previous study, we found that two phenotypes related to platelet reactivity, measured with the PFA-100 system, were highly heritable. The aim of the present study was to identify genetic determinants that influence the variability of these phenotypes: closure time of collagen-ADP (Col-ADP) and of ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20133221

    authors: Pujol-Moix N,Martinez-Perez A,Sabater-Lleal M,Llobet D,Vilalta N,Hamsten A,Souto JC,Soria JM

    更新日期:2019-06-30 00:00:00

  • Synthesis of Fmoc-Triazine Amino Acids and Its Application in the Synthesis of Short Antibacterial Peptidomimetics.

    abstract::To combat the escalating rise of antibacterial resistance, the development of antimicrobial peptides (AMPs) with a unique mode of action is considered an attractive strategy. However, proteolytic degradation of AMPs remains the greatest challenge in their transformation into therapeutics. Herein, we synthesized Fmoc-t...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21103602

    authors: Gunasekaran P,Kim EY,Lee J,Ryu EK,Shin SY,Bang JK

    更新日期:2020-05-20 00:00:00

  • Characterization of Carbonic Anhydrase In Vivo Using Magnetic Resonance Spectroscopy.

    abstract::Carbonic anhydrase is a ubiquitous metalloenzyme that catalyzes the reversible interconversion of CO2/HCO3-. Equilibrium of these species is maintained by the action of carbonic anhydrase. Recent advances in magnetic resonance spectroscopy have allowed, for the first time, in vivo characterization of carbonic anhydras...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21072442

    authors: Tomar JS,Shen J

    更新日期:2020-04-01 00:00:00

  • A Narrative Role of Vitamin D and Its Receptor: With Current Evidence on the Gastric Tissues.

    abstract::Vitamin D is a major steroid hormone that is gaining attention as a therapeutic molecule. Due to the general awareness of its importance for the overall well-being, vitamin D deficiency (VDD) is now recognized as a major health issue. The main reason for VDD is minimal exposure to sunlight. The vitamin D receptor (VDR...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20153832

    authors: Sirajudeen S,Shah I,Al Menhali A

    更新日期:2019-08-05 00:00:00

  • OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics.

    abstract::Plants undergo several but very precise molecular, physiological, and biochemical modulations in response to biotic stresses. Mitogen-activated protein kinase (MAPK) cascades orchestrate multiple cellular processes including plant growth and development as well as plant responses against abiotic and biotic stresses. H...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20123023

    authors: Zhou S,Chen M,Zhang Y,Gao Q,Noman A,Wang Q,Li H,Chen L,Zhou P,Lu J,Lou Y

    更新日期:2019-06-20 00:00:00

  • Low-Grade Inflammation Is Associated with Apathy Indirectly via Deep White Matter Lesions in Community-Dwelling Older Adults: The Sefuri Study.

    abstract::Low-grade inflammation is implicated in the pathogenesis of atherosclerosis, metabolic syndrome, and apathy as a form of vascular depression. We analyzed the brain magnetic resonance imaging findings in 259 community-dwelling older adults (122 men and 137 women, with a mean age of 68.4 years). The serum concentrations...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20081905

    authors: Yao H,Mizoguchi Y,Monji A,Yakushiji Y,Takashima Y,Uchino A,Yuzuriha T,Hashimoto M

    更新日期:2019-04-17 00:00:00

  • Circulating Cell-Free Tumour DNA in the Management of Cancer.

    abstract::With the development of new sensitive molecular techniques, circulating cell-free tumour DNA containing mutations can be identified in the plasma of cancer patients. The applications of this technology may result in significant changes to the care and management of cancer patients. Whilst, currently, these "liquid bio...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms160614122

    authors: Francis G,Stein S

    更新日期:2015-06-19 00:00:00

  • Omega-3 Fatty Acid-Derived Resolvin D2 Regulates Human Placental Vascular Smooth Muscle and Extravillous Trophoblast Activities.

    abstract::Omega-3 fatty acids are important to pregnancy and neonatal development and health. One mechanism by which omega-3 fatty acids exert their protective effects is through serving as substrates for the generation of specialized pro-resolving lipid mediators (SPM) that potently limit and resolve inflammatory processes. We...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20184402

    authors: Ulu A,Sahoo PK,Yuil-Valdes AG,Mukherjee M,Van Ormer M,Muthuraj PG,Thompson M,Anderson Berry A,Hanson CK,Natarajan SK,Nordgren TM

    更新日期:2019-09-07 00:00:00

  • Dietary Quercetin Attenuates Adipose Tissue Expansion and Inflammation and Alters Adipocyte Morphology in a Tissue-Specific Manner.

    abstract::Chronic inflammation in adipose tissue may contribute to depot-specific adipose tissue expansion, leading to obesity and insulin resistance. Dietary supplementation with quercetin or botanical extracts containing quercetin attenuates high fat diet (HFD)-induced obesity and insulin resistance and decreases inflammation...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19030895

    authors: Forney LA,Lenard NR,Stewart LK,Henagan TM

    更新日期:2018-03-17 00:00:00

  • Biohydrogen and Bioethanol Production from Biodiesel-Based Glycerol by Enterobacter aerogenes in a Continuous Stir Tank Reactor.

    abstract::Crude glycerol from the biodiesel manufacturing process is being produced in increasing quantities due to the expanding number of biodiesel plants. It has been previously shown that, in batch mode, semi-anaerobic fermentation of crude glycerol by Enterobacter aerogenes can produce biohydrogen and bioethanol simultaneo...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms160510650

    authors: Jitrwung R,Yargeau V

    更新日期:2015-05-11 00:00:00

  • Metabolic Features of Multiple Myeloma.

    abstract::Cancer is known for its cellular changes contributing to tumour growth and cell proliferation. As part of these changes, metabolic rearrangements are identified in several cancers, including multiple myeloma (MM), which is a condition whereby malignant plasma cells accumulate in the bone marrow (BM). These metabolic c...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19041200

    authors: El Arfani C,De Veirman K,Maes K,De Bruyne E,Menu E

    更新日期:2018-04-14 00:00:00

  • Enhanced production of a novel cyclic hexapeptide antibiotic (NW-G01) by Streptomyces alboflavus 313 using response surface methodology.

    abstract::NW-G01, produced by Streptomyces alboflavus 313, is a novel cyclic hexapeptide antibiotic with many potential applications, including antimicrobial activity and antitumor agents. This study developed a system for optimizing medium components in order to enhance NW-G01 production. In this study, Plackett-Burman design ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms13045230

    authors: Guo Z,Shen L,Ji Z,Wu W

    更新日期:2012-01-01 00:00:00

  • Toward Drug-Like Multispecific Antibodies by Design.

    abstract::The success of antibody therapeutics is strongly influenced by their multifunctional nature that couples antigen recognition mediated by their variable regions with effector functions and half-life extension mediated by a subset of their constant regions. Nevertheless, the monospecific IgG format is not optimal for ma...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21207496

    authors: Sawant MS,Streu CN,Wu L,Tessier PM

    更新日期:2020-10-12 00:00:00

  • Hepatotoxicity by Drugs: The Most Common Implicated Agents.

    abstract::Idiosyncratic drug-induced liver injury (DILI) is an underreported and underestimated adverse drug reaction. Information on the documented hepatotoxicity of drugs has recently been made available by a website that can be accessed in the public domain: LiverTox (http://livertox.nlm.nih.gov). According to critical analy...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms17020224

    authors: Björnsson ES

    更新日期:2016-02-06 00:00:00

  • Neglog: Homology-Based Negative Data Sampling Method for Genome-Scale Reconstruction of Human Protein-Protein Interaction Networks.

    abstract::Rapid reconstruction of genome-scale protein-protein interaction (PPI) networks is instrumental in understanding the cellular processes and disease pathogenesis and drug reactions. However, lack of experimentally verified negative data (i.e., pairs of proteins that do not interact) is still a major issue that needs to...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20205075

    authors: Mei S,Zhang K

    更新日期:2019-10-12 00:00:00

  • Enhanced Production of Anthraquinones and Phenolic Compounds and Biological Activities in the Cell Suspension Cultures of Polygonum multiflorum.

    abstract::Anthraquinones (AQs) and phenolic compounds are important phytochemicals that are biosynthesized in cell suspension cultures of Polygonum multiflorum. We wanted to optimize the effects of plant growth regulators (PGRs), media, sucrose, l-glutamine, jasmonic acid (JA), and salicylic acid (SA) for the production of phyt...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17111912

    authors: Thiruvengadam M,Rekha K,Rajakumar G,Lee TJ,Kim SH,Chung IM

    更新日期:2016-11-16 00:00:00

  • Protective Effects of Caffeic Acid Phenethyl Ester (CAPE) and Novel Cape Analogue as Inducers of Heme Oxygenase-1 in Streptozotocin-Induced Type 1 Diabetic Rats.

    abstract::Type 1 diabetes mellitus (T1D) is a chronic autoimmune disease resulting in the destruction of insulin producing β-cells of the pancreas, with consequent insulin deficiency and excessive glucose production. Hyperglycemia results in increased levels of reactive oxygen species (ROS) and nitrogen species (RNS) with conse...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20102441

    authors: Sorrenti V,Raffaele M,Vanella L,Acquaviva R,Salerno L,Pittalà V,Intagliata S,Di Giacomo C

    更新日期:2019-05-17 00:00:00