Abstract:
:Several studies on 5S ribosomal DNA (5S rDNA) have been focused on a subset of the following features in mostly one organism: number of copies, pseudogenes, secondary structure, promoter and terminator characteristics, genomic arrangements, types of non-transcribed spacers and evolution. In this work, we systematically analyzed 5S rDNA sequence diversity in available metazoan genomes, and showed organism-specific and evolutionary-conserved features. Putatively functional sequences (12,766) from 97 organisms allowed us to identify general features of this multigene family in animals. Interestingly, we show that each mammal species has a highly conserved (housekeeping) 5S rRNA type and many variable ones. The genomic organization of 5S rDNA is still under debate. Here, we report the occurrence of several paralog 5S rRNA sequences in 58 of the examined species, and a flexible genome organization of 5S rDNA in animals. We found heterogeneous 5S rDNA clusters in several species, supporting the hypothesis of an exchange of 5S rDNA from one locus to another. A rather high degree of variation of upstream, internal and downstream putative regulatory regions appears to characterize metazoan 5S rDNA. We systematically studied the internal promoters and described three different types of termination signals, as well as variable distances between the coding region and the typical termination signal. Finally, we present a statistical method for detection of linkage among noncoding RNA (ncRNA) gene families. This method showed no evolutionary-conserved linkage among 5S rDNAs and any other ncRNA genes within Metazoa, even though we found 5S rDNA to be linked to various ncRNAs in several clades.
journal_name
Heredity (Edinb)journal_title
Heredityauthors
Vierna J,Wehner S,Höner zu Siederdissen C,Martínez-Lage A,Marz Mdoi
10.1038/hdy.2013.63subject
Has Abstractpub_date
2013-11-01 00:00:00pages
410-21issue
5eissn
0018-067Xissn
1365-2540pii
hdy201363journal_volume
111pub_type
杂志文章相关文献
HEREDITY文献大全abstract::It was shown previously that the long lifespan and juvenile phase of trees strongly attenuate founder effects during colonisation in a diffusive dispersal model. However, this model yielded too slow a colonisation rate in comparison with palynological data for temperate forest trees. Since rare long-distance dispersal...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800243
更新日期:2003-04-01 00:00:00
abstract::A high-resolution transcript linkage map of barley was created using a single doubled haploid (DH) mapping population, only 3'-end expressed sequence tags (ESTs) and only PCR-based assays. Cultivar 'Haruna Nijo' and an ancestral wild-form accession 'H602' were used as EST donors and crossing parents of the mapping pop...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2009.57
更新日期:2009-08-01 00:00:00
abstract::In prediction of genomic values, the single-step method has been demonstrated to outperform multi-step methods. In statistical analyses of longitudinal traits, the random regression test-day model (RR-TDM) has clear advantages over other models. Our goal in this study was to evaluate the performance of a model that in...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2016.91
更新日期:2017-12-01 00:00:00
abstract::Genomic selection (GS) potentially offers an unparalleled advantage over traditional pedigree-based selection (TS) methods by reducing the time commitment required to carry out a single cycle of tree improvement. This quality is particularly appealing to tree breeders, where lengthy improvement cycles are the norm. We...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2015.57
更新日期:2015-12-01 00:00:00
abstract::Apomixis is a mode of asexual reproduction through seed. Progeny produced by apomixis are clonal replicas of a mother plant. The essential feature of apomixis is that embryo sacs and embryos are produced in ovules without meiotic reduction or egg cell fertilisation. Thus, apomixis fixes successful gene combinations an...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800808
更新日期:2006-04-01 00:00:00
abstract::Whether or not evolution by natural selection is predictable depends on the existence of general patterns shaping the way mutations interact with the genetic background. This interaction, also known as epistasis, has been observed during adaptation (macroscopic epistasis) and in individual mutations (microscopic epist...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-018-0143-5
更新日期:2018-11-01 00:00:00
abstract::Identifying genetic cues of functional relevance is key to understanding the drivers of evolution and increasingly important for the conservation of biodiversity. This study introduces nuclear ribosomal DNA (nrDNA) to mitochondrial DNA (mtDNA) copy number ratios as a metric with which to screen for this functional gen...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-018-0088-8
更新日期:2018-08-01 00:00:00
abstract::A long series of studies on mice has shown that mate choice decisions can be made on the basis of individual genotype at the major histocompatibility complex (MHC), which accords well with the importance of immunocompetence in some theories of sexual selection. Recent work on other vertebrate species, including humans...
journal_title:Heredity
pub_type: 杂志文章,评审
doi:10.1046/j.1365-2540.1998.00428.x
更新日期:1998-08-01 00:00:00
abstract::The long generation time and large effective size of widespread forest tree species can result in slow evolutionary rate and incomplete lineage sorting, complicating species delimitation. We addressed this issue with the African timber tree genus Milicia that comprises two morphologically similar and often confounded ...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2014.5
更新日期:2014-07-01 00:00:00
abstract::RAPD-PCR polymorphisms at 57 presumptive loci were used to examine the breeding structure of the mosquito Aedes aegypti in Puerto Rico. Mosquitoes were sampled from 16 locations in six cities and samples were located in a nested spatial design to examine local patterns of gene flow. Allele frequencies were estimated a...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.1996.50
更新日期:1996-04-01 00:00:00
abstract::The ubiquity of satellite DNA (satDNA) sequences has raised much controversy over the abundance of divergent monomer variants and the long-time nucleotide sequence stability observed for many satDNA families. In this work, we describe the satDNA BIV160, characterized in nine species of the three main bivalve clades (P...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2009.141
更新日期:2010-06-01 00:00:00
abstract::Cuticular colour in the mealworm beetle (Tenebrio molitor) is a quantitative trait, varying from tan to black. Population level variation in cuticular colour has been linked to pathogen resistance in this species and in several other insects: darker individuals are more resistant to pathogens. Given that cuticular col...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800675
更新日期:2005-06-01 00:00:00
abstract::Phlebotomus ariasi is one of the two sandflies transmitting the causative agent of zoonotic leishmaniasis, Leishmania infantum, in France and Iberia, and provides a rare case study of the postglacial re-colonization of France by a Mediterranean species. Four DNA sequences were analysed-mitochondrial cytochrome b (cyt ...
journal_title:Heredity
pub_type: 历史文章,杂志文章
doi:10.1038/hdy.2010.111
更新日期:2011-05-01 00:00:00
abstract::Differences in behaviour between individuals in populations living in different environments may result from evolution proceeding differently in each population. The parasitoid wasp Cotesia glomerata (L.) (Hymenoptera: Braconidae) parasitizes early instar larvae of butterflies in the family Pieridae. In the study area...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1046/j.1365-2540.1999.00549.x
更新日期:1999-08-01 00:00:00
abstract::The sibling species Anopheles atroparvus and Anopheles labranchiae are cytogenetically almost indistinguishable. The chromosome complement (2n = 6) consists of two pairs of autosomes and two heteromorphic sex chromosomes with largely homologous heterochromatic long arms. Treatment of chromosome preparations with the r...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.1990.80
更新日期:1990-08-01 00:00:00
abstract::The widespread and locally massive introgression of Y chromosomes of the eastern house mouse (Mus musculus musculus) into the range of the western subspecies (M. m. domesticus) in Central Europe calls for an explanation of its underlying mechanisms. Given the paternal inheritance pattern, obvious candidates for traits...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-020-0330-z
更新日期:2020-10-01 00:00:00
abstract::Drosophila mauritiana larvae are tolerant to ethanol as a supplementary nutritional resource at low concentrations. Higher levels of ethanol (5 per cent) in the food adversely affect larval behaviour causing reduced rates of locomotion and feeding which are associated with low larva-to-adult survival. Two codominant a...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.1995.61
更新日期:1995-04-01 00:00:00
abstract::Latitudinal variation in thorax and wing size traits was studied in wild-caught flies of the cactophilic Drosophila species, D. aldrichi and D. buzzatii, and their laboratory-reared progeny. The flies originated from five populations in Queensland, Australia, spanning an 800-km transect. The laboratory flies were rear...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1046/j.1365-2540.2000.00766.x
更新日期:2000-11-01 00:00:00
abstract::The phytophagous insects that damage crops are often polyphagous, feeding on several types of crop and on weeds. The refuges constituted by noncrop host plants may be useful in managing the evolution in pest species of resistance to the Bacillus thuringiensis toxins produced by transgenic crops. However, the benefits ...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6800186
更新日期:2003-02-01 00:00:00
abstract::Pinewood nematode (Bursaphelenchus xylophilus) is an invasive species that causes a destructive forest disease-pine wilt disease. This disease has been prevalent in some countries in Asia since the 1970s. An amplified fragment length polymorphism survey was used to compare the genetic variation of native and invasive ...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/sj.hdy.6801082
更新日期:2008-04-01 00:00:00
abstract::Genetic variation that is expressed only under specific environmental conditions can contribute to additional adverse effects of inbreeding if environmental conditions change. We present a proteomic characterization of a conditional lethal found in an inbred line of Drosophila melanogaster. The lethal effect is appare...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2009.132
更新日期:2010-02-01 00:00:00
abstract::There are only few studies of dominance effects in non-inbred aquaculture species, since commonly used mating designs often have low power to separate dominance, maternal and common environmental effects. Here, a factorial design with reciprocal cross, common rearing of eggs and subsequent lifecycle stages and pedigre...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/s41437-017-0046-x
更新日期:2018-05-01 00:00:00
abstract::We investigated intraspecific and interspecific patterns of paternity in Tribolium castaneum, the flour beetle, by mating females either to pairs of conspecific males or to one conspecific and one heterospecific male of the closely related species, T. freemani. Females of both species store sperm in the spermatheca af...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.1994.114
更新日期:1994-08-01 00:00:00
abstract::Random amplified polymorphic DNA (RAPD) analysis was performed to characterize the genetic diversity of Austropotamobius pallipes, a threatened freshwater crayfish native to Europe. Four decamer primers which generated six unambiguous polymorphic bands were used to analyse crayfish from 21 populations sampled in the m...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1046/j.1365-2540.2001.00909.x
更新日期:2001-07-01 00:00:00
abstract::The expression of three putative QTL for upper thermal tolerance (UTT) was examined in two strains of outbred rainbow trout unselected for this trait using simple-sequence repeat (SSR; microsatellite) markers associated with UTT in backcrosses of lines selected on this trait. Two-way diallel lots in the third generati...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1046/j.1365-2540.2001.00838.x
更新日期:2001-03-01 00:00:00
abstract::Evolution of the rDNA spacer, ITS 2, is examined by comparing 17 DNA sequences of the ticks, Ixodes scapularis and I. pacificus. The distribution of fixed interspecific differences and the relative frequency of base changes vs. insertions/deletions (indels) matches the distribution and relative frequency for intraspec...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.1995.139
更新日期:1995-09-01 00:00:00
abstract::It has been proposed that the distribution patterns and coalescence ages found in Europeans for mitochondrial DNA (mtDNA) haplogroups V, H1 and H3 are the result of a post-glacial expansion from a Franco-Cantabrian refuge that recolonized central and northern areas. In contrast, in this refined mtDNA study of the Cant...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2010.47
更新日期:2011-01-01 00:00:00
abstract::Determination of mammalian sex depends on the presence or absence of a functional testis. Testes are determined by the activity of the testis determining factor encoded by the sex determining gene, Y (SRY) located on the Y chromosome. Considerable evidence suggests that the SRY gene is the only gene on the Y chromosom...
journal_title:Heredity
pub_type: 杂志文章,评审
doi:10.1038/hdy.1995.179
更新日期:1995-12-01 00:00:00
abstract::This study characterized the genetic diversity of four populations of Ilex paraguariensis, a plant species native to South America, using random amplified polymorphic DNA (RAPD) markers. A total of 341 different RAPD bands were generated by the 15 primers analysed. High genetic variability was detected within each pop...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1046/j.1365-2540.2000.00687.x
更新日期:2000-06-01 00:00:00
abstract::Nucleotide diversity was assessed within nine candidate genes (CGs) (in total 4.6 kb) for the time of bud burst in nine sessile oak (Quercus petraea) populations distributed in central and northern Europe. The sampled populations were selected on the basis of their contrasting times of bud burst observed in common gar...
journal_title:Heredity
pub_type: 杂志文章
doi:10.1038/hdy.2009.134
更新日期:2010-05-01 00:00:00