A high-density transcript linkage map of barley derived from a single population.

Abstract:

:A high-resolution transcript linkage map of barley was created using a single doubled haploid (DH) mapping population, only 3'-end expressed sequence tags (ESTs) and only PCR-based assays. Cultivar 'Haruna Nijo' and an ancestral wild-form accession 'H602' were used as EST donors and crossing parents of the mapping population. Of the 10,366 primer sets developed from a non-redundant set of 3'EST sequences, 7700 sets generated useful amplicons and 3975 (52%) showed polymorphisms between the mapping parents. Of these, 2890 (28% of the total) were mapped by single nucleotide polymorphisms (1717), cleaved amplified polymorphic sequence (933) and INDELs (240). The present work involves an estimated 9% of the genes of barley. Of the mapped ESTs, 2689 (93%) are formatted in the Affymetrix Barley 1 GeneChip and full-length cDNA sequences are available for 1039 (36%). Mapped ESTs show highest similarity with sequences in the wheat gene index (93%) and moderate similarity with rice (50%). Comparison of mapped EST positions and the rice pseudomolecule indicated collinear regions between two species; these are particularly conserved for the entire barley chromosome 3H and rice chromosome 1. These mapped genes, together with a systematically developed set of genetic resources, will make it easier to directly clone genes showing simple inheritance and to determine the genetic basis of complex traits. The information will contribute to the development of a framework for the physical mapping of barley, which is necessary for genome sequencing.

journal_name

Heredity (Edinb)

journal_title

Heredity

authors

Sato K,Nankaku N,Takeda K

doi

10.1038/hdy.2009.57

subject

Has Abstract

pub_date

2009-08-01 00:00:00

pages

110-7

issue

2

eissn

0018-067X

issn

1365-2540

pii

hdy200957

journal_volume

103

pub_type

杂志文章

相关文献

HEREDITY文献大全
  • A quasi-equilibrium theory of the distribution of rare alleles in a subdivided population.

    abstract::The conditional average frequency of rare alleles has been shown in simulations to provide a simple and robust estimator of the number of individuals exchanged between local populations in an island model (Nm). This statistic is defined as the average frequency of an allele in those samples in which the allele is pres...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1986.63

    authors: Barton NH,Slatkin M

    更新日期:1986-06-01 00:00:00

  • Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat.

    abstract::Metabolism is a key determinant of plant growth and modulates plant adaptive responses. Increased metabolic variation due to heterozygosity may be beneficial for highly homozygous plants if their progeny is to respond to sudden changes in the habitat. Here, we investigate the extent to which heterozygosity contributes...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/s41437-017-0030-5

    authors: Rodriguez Cubillos AE,Tong H,Alseekh S,de Abreu E Lima F,Yu J,Fernie AR,Nikoloski Z,Laitinen RAE

    更新日期:2018-05-01 00:00:00

  • Do polymorphic loci require large sample sizes to estimate genetic distances?

    abstract::The coefficient of variation of estimates of three genetic distances (standard genetic distance of Nei, chord distance, FST) was examined with computer simulation to determine if large samples (per population) are necessary to precisely estimate genetic distances at loci with high levels of polymorphism. These simulat...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800548

    authors: Kalinowski ST

    更新日期:2005-01-01 00:00:00

  • Power law fitness landscapes and their ability to predict fitness.

    abstract::Whether or not evolution by natural selection is predictable depends on the existence of general patterns shaping the way mutations interact with the genetic background. This interaction, also known as epistasis, has been observed during adaptation (macroscopic epistasis) and in individual mutations (microscopic epist...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/s41437-018-0143-5

    authors: Passagem-Santos D,Zacarias S,Perfeito L

    更新日期:2018-11-01 00:00:00

  • Diploid models of the handicap principle.

    abstract::"Fisherian" models of sexual selection by female choice assume that females prefer male characters which are initially advantageous or neutral; character and preference then spread through the population. Once female preference has evolved to a higher frequency, the male character can become more extreme and disadvant...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1988.44

    authors: Tomlinson IP

    更新日期:1988-04-01 00:00:00

  • Genetic relationships within the genus Beta determined using both PCR-based marker and DNA sequencing techniques.

    abstract::The sequences of ITS1 of the internal transcribed spacer regions of nuclear ribosomal DNA from 11 species or subspecies in four sections of the genus Beta were compared. Phylogeny of these wild beet taxa was inferred from the sequence data using phenetic and phylogenetic analyses. Multiple accessions from the same 11 ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.1998.00332.x

    authors: Shen Y,Ford-Lloyd BV,Newbury HJ

    更新日期:1998-05-01 00:00:00

  • Drosophila melanogaster and D. simulans rescue strains produce fit offspring, despite divergent centromere-specific histone alleles.

    abstract::The interaction between rapidly evolving centromere sequences and conserved kinetochore machinery appears to be mediated by centromere-binding proteins. A recent theory proposes that the independent evolution of centromere-binding proteins in isolated populations may be a universal cause of speciation among eukaryotes...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800275

    authors: Sainz A,Wilder JA,Wolf M,Hollocher H

    更新日期:2003-07-01 00:00:00

  • Genetic control of self-incompatibility in Anagallis monelli (Primulaceae: Myrsinaceae).

    abstract::The genetic control of self-incompatibility (SI) was studied in the Mediterranean short-lived perennial species Anagallis monelli (Primulaceae: Myrsinaceae). Arrays of siblings, including families derived from reciprocal crosses, were cross-pollinated in full diallels, and compatibility groups were assesssed from a ce...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.2001.00951.x

    authors: Talavera S,Gibbs PE,Fernández-Piedra MP,Ortiz-Herrera MA

    更新日期:2001-11-01 00:00:00

  • Effects of male fecundity, interindividual distance and anisotropic pollen dispersal on mating success in a Scots pine (Pinus sylvestris) seed orchard.

    abstract::Quantifying the effect of pollen dispersal and flowering traits on mating success is essential for understanding evolutionary responses to changing environments and establishing strategies for forest tree breeding. This study examined, quantitatively, the effects of male fecundity, interindividual distance and anisotr...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2011.76

    authors: Torimaru T,Wennström U,Lindgren D,Wang XR

    更新日期:2012-03-01 00:00:00

  • Sequence-tagged-site (STS) markers of arbitrary genes: the amount and nature of variation revealed in Norway spruce.

    abstract::We examined the amount and nature of variation revealed by cDNA-based sequence-tagged-site (STS) markers in Norway spruce (Picea abies (L.) Karst.) using 39 pairs of heterologous primers that were based upon arbitrary genes in black spruce (Picea mariana (Mill.) B.S.P.). A panel of 22 diverse Norway spruce genotypes w...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6885740

    authors: Perry DJ,Isabel N,Bousquet J

    更新日期:1999-09-01 00:00:00

  • Heritability of plumage colour morph variation in a wild population of promiscuous, long-lived Australian magpies.

    abstract::Colour polymorphisms have evolutionary significance for the generation and maintenance of species diversity. Demonstrating heritability of polymorphic traits can be challenging for wild populations of long-lived species because accurate information is required on trait expression and familial relationships. The Austra...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/s41437-019-0212-4

    authors: Dobson AE,Schmidt DJ,Hughes JM

    更新日期:2019-09-01 00:00:00

  • Selection during a selfing programme. II. The effects of two or more rounds of selection.

    abstract::Theory presented in a previous paper has been used to provide a description of the responses expected from selection in two or more generations of a selfing series. Optimum two-stages and multi-stage selection programmes are described, for a limited set of circumstances, and compared with the single-stage designs desc...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1990.89

    authors: Cornish MA

    更新日期:1990-10-01 00:00:00

  • Rapid, habitat-related evolution of land snail colour morphs on reclaimed land.

    abstract::I made use of the known dates of reclamation (and of afforestations) in the IJsselmeerpolders in The Netherlands to assess evolutionary adaptation in Cepaea nemoralis. At 12 localities (three in each polder), I sampled a total of 4390 adult individuals in paired open and shaded habitats, on average 233 m apart, and sc...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2012.74

    authors: Schilthuizen M

    更新日期:2013-03-01 00:00:00

  • Quantitative analysis of genetic differentiation among European and Chilean strains of Drosophila subobscura.

    abstract::An analysis of the interpopulational differences observed between four European and four Chilean stocks of Drosophila subobscura, with regard to wing size, egg-to-adult development time and preadult viability, shows highly significant differences between the eight stocks irrespective of the continent from which the fl...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1991.61

    authors: Budnik M,Cifuentes L,Brncic D

    更新日期:1991-08-01 00:00:00

  • How accurate is the current picture of human genetic variation?

    abstract::Our understanding of the distribution of worldwide human genomic diversity has greatly increased over recent years thanks to the availability of large data sets derived from short tandem repeats (STRs), insertion deletion polymorphisms (indels) and single nucleotide polymorphisms (SNPs). A concern, however, is that th...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2008.89

    authors: Romero IG,Manica A,Goudet J,Handley LL,Balloux F

    更新日期:2009-02-01 00:00:00

  • A steep cline in ladybird melanism has decayed over 25 years: a genetic response to climate change?

    abstract::A cline in the frequency of melanic morphs of the two-spot ladybird, Adalia bipunctata, was first surveyed in 1980 along a transect extending inland from the coast in the Netherlands. At that time, the frequency of melanics increased over some 40 km from 10% near the coast to nearly 60% inland. Additional surveys made...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2011.49

    authors: Brakefield PM,de Jong PW

    更新日期:2011-12-01 00:00:00

  • Restricted matrilineal gene flow and regional differentiation among Atlantic salmon (Salmo salar L.) populations within the Bay of Fundy, eastern Canada.

    abstract::Matrilineal phylogenetic divergence among Atlantic salmon stocks of the Bay of Fundy in south eastern Canada is investigated. Sequence variation in two regions of the mitochondrial ND1 gene, encompassing 710 base pairs, is described for 168 salmon from 11 rivers. Mean overall haplotype and nucleotide diversity (h and ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800166

    authors: Verspoor E,O'Sullivan M,Arnold AL,Knox D,Amiro PG

    更新日期:2002-12-01 00:00:00

  • The biometrical genetics of competitive parameters in Drosophila melanogaster.

    abstract::Despite the importance of competition as an evolutionary determinant in natural populations there have been few studies of the genetical control of competitive ability. Here, we report the results of a biometrical analysis of four continuously varying traits which, between them, describe the competitive interactions i...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1990.27

    authors: Hemmat M,Eggleston P

    更新日期:1990-04-01 00:00:00

  • Genetic hitchhiking and resistance evolution to transgenic Bt toxins: insights from the African stalk borer Busseola fusca (Noctuidae).

    abstract::Since transgenic crops expressing Bacillus thuringiensis (Bt) toxins were first released, resistance evolution leading to failure in control of pests populations has been observed in a number of species. Field resistance of the moth Busseola fusca was acknowledged 8 years after Bt maize was introduced in South Africa....

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2016.104

    authors: Campagne P,Capdevielle-Dulac C,Pasquet R,Cornell SJ,Kruger M,Silvain JF,LeRü B,Van den Berg J

    更新日期:2017-04-01 00:00:00

  • Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees.

    abstract::The theoretical impacts of anthropogenic habitat degradation on genetic resources have been well articulated. Here we use a simulation approach to assess the magnitude of expected genetic change, and review 31 studies of 23 neotropical tree species to assess whether empirical case studies conform to theory. Major diff...

    journal_title:Heredity

    pub_type: 杂志文章,评审

    doi:10.1038/sj.hdy.6800725

    authors: Lowe AJ,Boshier D,Ward M,Bacles CF,Navarro C

    更新日期:2005-10-01 00:00:00

  • The alcohol dehydrogenase polymorphism in natural populations of Drosophila melanogaster: ADH activity variation restriction site polymorphism and the Adh cline.

    abstract::Alcohol dehydrogenase activity has been measured in 186 iso-second chromosome lines--104 from seven Australian populations and 82 from six Chinese populations. Restriction endonuclease variation in the Adh gene region in these lines has previously been described (Jiang & Gibson, 1991). The mean ADH activity of AdhF an...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1992.48

    authors: Jiang JC,Gibson JB

    更新日期:1992-04-01 00:00:00

  • Effects of host genotype against the expression of spiroplasma-induced male killing in Drosophila melanogaster.

    abstract::Increasing attention has been paid to the maternally inherited microbes that are capable of manipulating the reproduction of their hosts for their own benefit. Although several studies have revealed that the host genotype can affect the intensity of the manipulation, the underlying genetic basis is poorly understood. ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2009.14

    authors: Kageyama D,Anbutsu H,Shimada M,Fukatsu T

    更新日期:2009-05-01 00:00:00

  • Spatial structure of shell polychromatism in populations of Cepaea nemoralis: new techniques for an old debate.

    abstract::A conspicuous shell polychromatism is observed in colonies of Cepaea nemoralis from western France (Brittany). The present study is intended to search for a spatial structure of shell features at this scale and to infer evolutionary processes from the observed patterns. We used a database of morph frequencies (six com...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800012

    authors: Bellido A,Madec L,Arnaud JF,Guiller A

    更新日期:2002-01-01 00:00:00

  • Geographical patterns of genetic subdivision in the cellar spider Pholcus phalangioides (Araneae).

    abstract::Geographical patterns of gene flow and drift were analysed in the commensal cellar spider Pholcus phalangioides to get insight into the causes affecting genetic variation in this species strictly associated with man. Our sampling consisted of 23 subpopulations collected over five urban regions in central Europe (dista...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.2001.00815.x

    authors: Schäfer MA,Hille A,Uhl GB

    更新日期:2001-01-01 00:00:00

  • Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix.

    abstract::Correlated multiple testing is widely performed in genetic research, particularly in multilocus analyses of complex diseases. Failure to control appropriately for the effect of multiple testing will either result in a flood of false-positive claims or in true hits being overlooked. Cheverud proposed the idea of adjust...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800717

    authors: Li J,Ji L

    更新日期:2005-09-01 00:00:00

  • Sex determination and inbreeding depression in an ant with regular sib-mating.

    abstract::Haplodiploidy is one of the most widespread mechanisms of sex determination in animals. In many Hymenoptera, including all hitherto investigated social species, diploid individuals, which are heterozygous at the sex locus, develop as females, whereas haploid, hemizygous individuals develop as males (single-locus compl...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800846

    authors: Schrempf A,Aron S,Heinze J

    更新日期:2006-07-01 00:00:00

  • Wolbachia variant that induces two distinct reproductive phenotypes in different hosts.

    abstract::Wolbachia is an intracellular endosymbiont that induces a variety of reproductive alterations in diverse arthropods. The almond moth, Cadra cautella, is double infected with two Wolbachia variants, wCauA and wCauB, and expresses complete cytoplasmic incompatibility (CI). The individual contribution of wCauA and wCauB ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800737

    authors: Sasaki T,Massaki N,Kubo T

    更新日期:2005-11-01 00:00:00

  • The quantitative genetic basis of polyandry in the parasitoid wasp, Nasonia vitripennis.

    abstract::Understanding the evolution of female multiple mating (polyandry) is crucial for understanding sexual selection and sexual conflict. Despite this interest, little is known about its genetic basis or whether genetics influences the evolutionary origin or maintenance of polyandry. Here, we explore the quantitative genet...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800897

    authors: Shuker DM,Phillimore AJ,Burton-Chellew MN,Hodge SE,West SA

    更新日期:2007-02-01 00:00:00

  • The prospects for polymorphisms shared between species.

    abstract::Recent molecular evidence has shown that many MHC polymorphisms are not only shared between species but are in fact identical at the molecular level. Species that share these polymorphisms may be very distantly related and often diverged millions of generations ago. It is now known that this phenomenon is very unlikel...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1992.39

    authors: Golding B

    更新日期:1992-03-01 00:00:00

  • Contrasting relationships between the diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks.

    abstract::Nucleotide diversity was assessed within nine candidate genes (CGs) (in total 4.6 kb) for the time of bud burst in nine sessile oak (Quercus petraea) populations distributed in central and northern Europe. The sampled populations were selected on the basis of their contrasting times of bud burst observed in common gar...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2009.134

    authors: Derory J,Scotti-Saintagne C,Bertocchi E,Le Dantec L,Graignic N,Jauffres A,Casasoli M,Chancerel E,Bodénès C,Alberto F,Kremer A

    更新日期:2010-05-01 00:00:00