Proteomic characterization of influenza H5N1 virus-like particles and their protective immunogenicity.

Abstract:

:Recombinant virus-like particles (VLPs) have been shown to induce protective immunity. Despite their potential significance as promising vaccine candidates, the protein composition of VLPs produced in insect cells has not been well characterized. Here we report a proteomic analysis of influenza VLPs containing hemagglutinin (HA) and matrix M1 proteins from a human isolate of avian influenza H5N1 virus (H5 VLPs) produced in insect cells using the recombinant baculovirus expression system. Comprehensive proteomic analysis of purified H5 VLPs identified viral proteins and 37 additional host-derived proteins, many of which are known to be present in other enveloped viruses. Proteins involved in different cellular structures and functions were found to be present in H5 VLPs including those from the cytoskeleton, translation, chaperone, and metabolism. Immunization with purified H5 VLPs induced protective immunity, which was comparable to the inactivated whole virus containing all viral components. Unpurified H5 VLPs containing excess amounts of noninfluenza soluble proteins also conferred 100% protection against lethal challenge although lower immune responses were induced. These results provide important implications consistent with the idea that VLP production in insect cells may involve similar cellular machinery as other RNA enveloped viruses during synthesis, assembly, trafficking, and budding processes.

journal_name

J Proteome Res

authors

Song JM,Choi CW,Kwon SO,Compans RW,Kang SM,Kim SI

doi

10.1021/pr200086v

subject

Has Abstract

pub_date

2011-08-05 00:00:00

pages

3450-9

issue

8

eissn

1535-3893

issn

1535-3907

journal_volume

10

pub_type

杂志文章
  • A Method for Comprehensive Glycosite-Mapping and Direct Quantitation of Serum Glycoproteins.

    abstract::A comprehensive glycan map was constructed for the top eight abundant glycoproteins in plasma using both specific and nonspecific enzyme digestions followed by nano liquid chromatography (LC)-chip/quadrupole time-of-flight mass spectrometry (MS) analysis. Glycopeptides were identified using an in-house software tool, ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00756

    authors: Hong Q,Ruhaak LR,Stroble C,Parker E,Huang J,Maverakis E,Lebrilla CB

    更新日期:2015-12-04 00:00:00

  • Targeted tissue proteomic analysis of human astrocytomas.

    abstract::Complicating proteomic analysis of whole tissues is the obvious problem of cell heterogeneity in tissues, which often results in misleading or confusing molecular findings. Thus, the coupling of tissue microdissection for tumor cell enrichment with capillary isotachophoresis-based selective analyte concentration not o...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300303t

    authors: Fang X,Wang C,Balgley BM,Zhao K,Wang W,He F,Weil RJ,Lee CS

    更新日期:2012-08-03 00:00:00

  • Proteomic characteristics of ex vivo-enriched adult human bone marrow mononuclear cells in continuous perfusion cultures.

    abstract::A major challenge in developing cell therapies is reliable characterization of the cell product at the molecular level. Fresh autologous and passaged human bone marrow enriched for stem and mesenchymal stromal stem cells have been used to regenerate bone. We report the proteome of an innovative autologous human bone m...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr801064u

    authors: Prahalad AK,Hock JM

    更新日期:2009-04-01 00:00:00

  • Identification of novel protein biomarkers of preterm birth in human cervical-vaginal fluid.

    abstract::Spontaneous preterm birth (SPTB) is a major contributor to perinatal morbidity and mortality. However, the diagnosis of preterm labor (PTL) that leads to preterm birth is difficult, and there is a pressing need for improved diagnosis. We utilized multidimensional liquid chromatography-tandem mass spectrometry (LC/LC-M...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0605421

    authors: Pereira L,Reddy AP,Jacob T,Thomas A,Schneider KA,Dasari S,Lapidus JA,Lu X,Rodland M,Roberts CT Jr,Gravett MG,Nagalla SR

    更新日期:2007-04-01 00:00:00

  • Andromeda: a peptide search engine integrated into the MaxQuant environment.

    abstract::A key step in mass spectrometry (MS)-based proteomics is the identification of peptides in sequence databases by their fragmentation spectra. Here we describe Andromeda, a novel peptide search engine using a probabilistic scoring model. On proteome data, Andromeda performs as well as Mascot, a widely used commercial s...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101065j

    authors: Cox J,Neuhauser N,Michalski A,Scheltema RA,Olsen JV,Mann M

    更新日期:2011-04-01 00:00:00

  • Extended Snake Venomics by Top-Down In-Source Decay: Investigating the Newly Discovered Anatolian Meadow Viper Subspecies, Vipera anatolica senliki.

    abstract::Herein, we report on the venom proteome of Vipera anatolica senliki, a recently discovered and hitherto unexplored subspecies of the critically endangered Anatolian meadow viper endemic to the Antalya Province of Turkey. Integrative venomics, including venom gland transcriptomics as well as complementary bottom-up and...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00869

    authors: Hempel BF,Damm M,Mrinalini,Göçmen B,Karış M,Nalbantsoy A,Kini RM,Süssmuth RD

    更新日期:2020-04-03 00:00:00

  • Protein expression in sputum of smokers and chronic obstructive pulmonary disease patients: a pilot study by CapLC-ESI-Q-TOF.

    abstract::The current report describes the use of CapLC-ESI-Q/TOF-MS for investigating the proteome profiles of hypertonic saline-induced sputum samples from 56 smokers. The severity of their lung disease ranged from normal (healthy smokers) to chronic bronchitis, chronic obstructive pulmonary disease (COPD), and COPD with emph...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070440q

    authors: Casado B,Iadarola P,Pannell LK,Luisetti M,Corsico A,Ansaldo E,Ferrarotti I,Boschetto P,Baraniuk JN

    更新日期:2007-12-01 00:00:00

  • Advances in Higher Order Multiplexing Techniques in Proteomics.

    abstract::Proteomics by mass spectrometry (MS) allows the large-scale identification and quantitation of the cellular proteins in a given biological context. Systems biology studies from proteomics data are largely limited by the accuracy and coverage of quantitative proteomics along with missing values. Toward this end, statis...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/acs.jproteome.9b00228

    authors: Aggarwal S,Talukdar NC,Yadav AK

    更新日期:2019-06-07 00:00:00

  • Proteomics of neuroendocrine secretory vesicles reveal distinct functional systems for biosynthesis and exocytosis of peptide hormones and neurotransmitters.

    abstract::Regulated secretory vesicles produce, store, and secrete active peptide hormones and neurotransmitters that function in cell-cell communication. To gain knowledge of the protein systems involved in such secretory vesicle functions, we analyzed proteins in the soluble and membrane fractions of dense core secretory vesi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060503p

    authors: Wegrzyn J,Lee J,Neveu JM,Lane WS,Hook V

    更新日期:2007-05-01 00:00:00

  • A protein processing filter method for bacterial identification by mass spectrometry-based proteomics.

    abstract::A "one-pot" alternative method for processing proteins and isolating peptide mixtures from bacterial samples is presented for liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis and data reduction. The conventional in-solution digestion of the protein contents of bacteria is compared to a small disposab...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101086a

    authors: Jabbour RE,Deshpande SV,Stanford MF,Wick CH,Zulich AW,Snyder AP

    更新日期:2011-02-04 00:00:00

  • Large-scale proteome quantification of hepatocellular carcinoma tissues by a three-dimensional liquid chromatography strategy integrated with sample preparation.

    abstract::Hepatocellular carcinoma is one of the most fatal cancers worldwide. In this study, a reversed-phase-strong cation exchange-reversed-phase three-dimensional liquid chromatography strategy was established and coupled with mass spectrometry to investigate the differential proteome expression of HCC and normal liver tiss...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500200s

    authors: Xu B,Wang F,Song C,Sun Z,Cheng K,Tan Y,Wang H,Zou H

    更新日期:2014-08-01 00:00:00

  • Assessment of Quantification Precision of Histone Post-Translational Modifications by Using an Ion Trap and down To 50 000 Cells as Starting Material.

    abstract::Histone post-translational modifications (PTMs) are fundamental players of chromatin regulation, as they contribute to editing histone chemical properties and recruiting proteins for gene transcription and DNA repair. Mass spectrometry (MS)-based proteomics is currently the most widely adopted strategy for high-throug...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00544

    authors: Guo Q,Sidoli S,Garcia BA,Zhao X

    更新日期:2018-01-05 00:00:00

  • Proteomic identification of in vivo interactors reveals novel function of skin cornification proteins.

    abstract::Protection against injurious external insults and loss of vital fluids is essential for life and is in all organisms, from bacteria to plants and humans, provided by some form of barrier. Members of the small proline-rich (SPRR) protein family are major components of the cornified cell envelope (CE), a structure respo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300310b

    authors: Vermeij WP,Florea BI,Isenia S,Alia A,Brouwer J,Backendorf C

    更新日期:2012-06-01 00:00:00

  • Ethylenediaminetetraacetic acid increases identification rate of phosphoproteomics in real biological samples.

    abstract::We have developed a novel approach to enhance phosphopeptide identification in liquid chromatography/mass spectrometry (LC/MS)-based phosphoproteomics. After enrichment of phosphopeptides with immobilized metal affinity chromatography (IMAC) and titanium dioxide (TiO(2)) microcolumns, samples were coinjected with ethy...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900918h

    authors: Nakamura T,Myint KT,Oda Y

    更新日期:2010-03-05 00:00:00

  • An integrated proteomic workflow for two-dimensional differential gel electrophoresis and robotic spot picking.

    abstract::New technologies have advanced the field of proteomics, and a number of companies have developed innovative platforms to drive this research. However, significant challenges are often encountered when trying to integrate complementary technologies from multiple manufacturers. We have developed a software and hardware ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050465u

    authors: Mahnke RC,Corzett TH,McCutchen-Maloney SL,Chromy BA

    更新日期:2006-09-01 00:00:00

  • Selenite-induced toxicity in cancer cells is mediated by metabolic generation of endogenous selenium nanoparticles.

    abstract::Selenite has been a touted cancer chemopreventative agent but generates conflicting outcomes. Multiple mechanisms of selenite cytotoxicity in cancer cells are thought to be induced by metabolites of selenite. We observed that intracellular metabolism of selenite generates endogenous selenium nanoparticles (SeNPs) in c...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501086e

    authors: Bao P,Chen Z,Tai RZ,Shen HM,Martin FL,Zhu YG

    更新日期:2015-02-06 00:00:00

  • GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans.

    abstract::Mass spectrometry is the main analytical technique currently used to address the challenges of glycomics as it offers unrivalled levels of sensitivity and the ability to handle complex mixtures of different glycan variations. Determination of glycan structures from analysis of MS data is a major bottleneck in high-thr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr7008252

    authors: Ceroni A,Maass K,Geyer H,Geyer R,Dell A,Haslam SM

    更新日期:2008-04-01 00:00:00

  • Protein biomarkers for in vitro testing of embryotoxicity.

    abstract::There are new challenges for hazard and risk assessment in the chemical industry with regard to REACH legislation in Europe and related activities in the U.S. and Japan, which require the development of novel in vitro models for the molecular characterization of drug- or chemical-related effects replacing conventional...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100514e

    authors: Groebe K,Hayess K,Klemm-Manns M,Schwall G,Wozny W,Steemans M,Peters AK,Sastri C,Jaeckel P,Stegmann W,Zengerling H,Schopf R,Poznanovic S,Stummann TC,Seiler A,Spielmann H,Schrattenholz A

    更新日期:2010-11-05 00:00:00

  • Human proteins with target sites of multiple post-translational modification types are more prone to be involved in disease.

    abstract::Many proteins can be modified by multiple types of post-translational modifications (Mtp-proteins). Although some post-translational modifications (PTMs) have recently been found to be associated with life-threatening diseases like cancers and neurodegenerative disorders, the underlying mechanisms remain enigmatic to ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401019d

    authors: Huang Q,Chang J,Cheung MK,Nong W,Li L,Lee MT,Kwan HS

    更新日期:2014-06-06 00:00:00

  • gFinder: A Web-Based Bioinformatics Tool for the Analysis of N-Glycopeptides.

    abstract::Glycoproteins influence numerous indispensable biological functions, and changes in protein glycosylation have been observed in various diseases. The identification and characterization of glycoprotein and glycosylation sites by mass spectrometry (MS) remain challenging tasks, and great efforts have been devoted to th...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00772

    authors: Kim JW,Hwang H,Lim JS,Lee HJ,Jeong SK,Yoo JS,Paik YK

    更新日期:2016-11-04 00:00:00

  • Expression profiling of herpesvirus and vaccinia virus proteins using a high-throughput baculovirus screening system.

    abstract::We have developed a high-throughput system for generating baculoviruses and testing the expression, solubility, and affinity column purification of encoded proteins. We have used this system to generate baculoviruses for and analyze the expression of 337 proteins from three different herpesviruses (HSV-1, EBV, and CMV...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050137u

    authors: Gao M,Brufatto N,Chen T,Murley LL,Thalakada R,Domagala M,Beattie B,Mamelak D,Athanasopoulos V,Johnson D,McFadden G,Burks C,Frappier L

    更新日期:2005-11-01 00:00:00

  • Challenges in Peptide-Spectrum Matching: A Robust and Reproducible Statistical Framework for Removing Low-Accuracy, High-Scoring Hits.

    abstract::Workflows for large-scale (MS)-based shotgun proteomics can potentially lead to costly errors in the form of incorrect peptide-spectrum matches (PSMs). To improve the robustness of these workflows, we have investigated the use of the precursor mass discrepancy (PMD) to detect and filter potentially false PSMs that hav...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00478

    authors: Hubler SL,Kumar P,Mehta S,Easterly C,Johnson JE,Jagtap PD,Griffin TJ

    更新日期:2020-01-03 00:00:00

  • Comparison of software tools to improve the detection of carcinogen induced changes in the rat liver proteome by analyzing SELDI-TOF-MS spectra.

    abstract::A common animal model of chemical hepatocarcinogenesis was used to demonstrate the potential identification of carcinogenicity related protein signatures/biomarkers. Therefore, an animal study in which rats were treated with the known liver carcinogen N-nitrosomorpholine (NNM) or the corresponding vehicle was evaluate...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050279o

    authors: Beyer S,Walter Y,Hellmann J,Kramer PJ,Kopp-Schneider A,Kroeger M,Ittrich C

    更新日期:2006-02-01 00:00:00

  • Improved Integrated Whole Proteomic and Phosphoproteomic Profiles of Severe Acute Pancreatitis.

    abstract::Severe acute pancreatitis (SAP) is caused by complicated biological factors, and revealing its complex pathogenesis by single-target analysis is difficult. Systematic studies have developed slowly because extraction of degradable pancreatic proteins exposed to multiple proteases is challenging. We present integrated w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00229

    authors: Wang C,Zhang Y,Tan J,Chen B,Sun L

    更新日期:2020-06-05 00:00:00

  • Comparison of protein immunoprecipitation-multiple reaction monitoring with ELISA for assay of biomarker candidates in plasma.

    abstract::Quantitative analysis of protein biomarkers in plasma is typically done by ELISA, but this method is limited by the availability of high-quality antibodies. An alternative approach is protein immunoprecipitation combined with multiple reaction monitoring mass spectrometry (IP-MRM). We compared IP-MRM to ELISA for the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400877e

    authors: Lin D,Alborn WE,Slebos RJ,Liebler DC

    更新日期:2013-12-06 00:00:00

  • Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue.

    abstract::To decrease the mortality of lung cancer, better screening and diagnostic tools as well as treatment options are needed. Protein glycosylation is one of the major post-translational modifications that is altered in cancer, but it is not exactly clear which glycan structures are affected. A better understanding of the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00255

    authors: Ruhaak LR,Taylor SL,Stroble C,Nguyen UT,Parker EA,Song T,Lebrilla CB,Rom WN,Pass H,Kim K,Kelly K,Miyamoto S

    更新日期:2015-11-06 00:00:00

  • Radioactive Chernobyl environment has produced high-oil flax seeds that show proteome alterations related to carbon metabolism during seed development.

    abstract::Starting in 2007, we have grown soybean (Glycine max [L.] Merr. variety Soniachna) and flax (Linum usitatissimum, L. variety Kyivskyi) in the radio-contaminated Chernobyl area and analyzed the seed proteomes. In the second-generation flax seeds, we detected a 12% increase in oil content. To characterize the bases for ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400528m

    authors: Klubicová K,Danchenko M,Skultety L,Berezhna VV,Rashydov NM,Hajduch M

    更新日期:2013-11-01 00:00:00

  • The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation.

    abstract::The enormous challenges of mass spectrometry-based metaproteomics are primarily related to the analysis and interpretation of the acquired data. This includes reliable identification of mass spectra and the meaningful integration of taxonomic and functional meta-information from samples containing hundreds of unknown ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501246w

    authors: Muth T,Behne A,Heyer R,Kohrs F,Benndorf D,Hoffmann M,Lehtevä M,Reichl U,Martens L,Rapp E

    更新日期:2015-03-06 00:00:00

  • Experimental metabonomic model of dietary variation and stress interactions.

    abstract::Stress in the form of moderate periods of maternal separation of newborn rats has been postulated to cause permanent changes in the central nervous system and diseases in later life. It is also considered that dietary supplementation with long chain polyunsaturated fatty acids (LC-PUFAs) can potentially ameliorate the...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0504182

    authors: Wang Y,Holmes E,Tang H,Lindon JC,Sprenger N,Turini ME,Bergonzelli G,Fay LB,Kochhar S,Nicholson JK

    更新日期:2006-07-01 00:00:00

  • Metabolic flux analysis and visualization.

    abstract::One of the ultimate goals of systems biology research is to obtain a comprehensive understanding of the control mechanisms of complex cellular metabolisms. Metabolic Flux Analysis (MFA) is a important method for the quantitative estimation of intracellular metabolic flows through metabolic pathways and the elucidation...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2002885

    authors: Toya Y,Kono N,Arakawa K,Tomita M

    更新日期:2011-08-05 00:00:00