Structural and elemental characterization of heart cells grown in a collagen matrix.

Abstract:

:A novel preparation of spontaneously contracting heart cells embedded in a collagen strand provides an ideal experimental system for correlative structure-function experiments that utilize the techniques of electron microscopy, quantitative electron probe x-ray microanalysis (EPXMA) and imaging. Heart cells grown within the strand for 1 day possess the subcellular content and distribution of physiologically relevant elements--Na, Mg, P, S, Cl, K, and Ca--found in intact heart cell preparations. The presence of junctional specializations between, and organized myofibrils within, the majority of cells after 1 day in culture also establishes that the collagen matrix promotes vigorous cell development as well as maintains physiological integrity. EPXMA, combined with ultrastructural analyses, provides elemental content data on a cell-by-cell basis. In studies presented here, viable cells, comprising over 80% of the strand cell population, could be distinguished easily from those which had been functionally compromised, not only by aberrant structure but also by altered subcellular compartmentation of Na, K, Cl, and Ca. Within individual viable cells, compartmental differences in element content were notable especially between mitochondria and cytoplasm. However, nuclear euchromatin, but not heterochromatin, appeared approximately identical to cytoplasm in elemental and water content. In such cells, the cytoplasmic K:Na ratio was maintained at a high level (approximately 15:1). The results with respect to K, Na, and other elements demonstrated the integrity of membrane transport mechanisms regulating the movement and distribution of ions and the maintenance of ionic homeostasis in cells of the strand preparation.

journal_name

J Struct Biol

authors

LeFurgey A,Hawkey LA,Ingram P,Lieberman M

doi

10.1016/1047-8477(91)90061-z

subject

Has Abstract

pub_date

1991-02-01 00:00:00

pages

42-56

issue

1

eissn

1047-8477

issn

1095-8657

journal_volume

106

pub_type

杂志文章
  • The rhodopsin-transducin complex houses two distinct rhodopsin molecules.

    abstract::Upon illumination the visual receptor rhodopsin (Rho) transitions to the activated form Rho(∗), which binds the heterotrimeric G protein, transducin (Gt) causing GDP to GTP exchange and Gt dissociation. Using succinylated concanavalin A (sConA) as a probe, we visualized native Rho dimers solubilized in 1mM n-dodecyl-β...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.02.014

    authors: Jastrzebska B,Ringler P,Palczewski K,Engel A

    更新日期:2013-05-01 00:00:00

  • Evolution of a rhythmic lamination in the organophosphatic shells of brachiopods

    abstract::The secondary layer of organophosphatic-shelled brachiopods consists of stratiform laminae in glycosaminoglycans (GAGs), pervaded by canals with chitinous walls. The laminae are composed of various aggregates of protein-coated granules of apatite, 4-8 nm in size, 10 or so soluble proteins, beta-chitinous meshes and sh...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1999.4117

    authors: Williams A,Cusack M

    更新日期:1999-06-30 00:00:00

  • The three-dimensional structure of frozen-hydrated Nudaurelia capensis beta virus, a T = 4 insect virus.

    abstract::The three-dimensional structure of Nudaurelia capensis beta virus (N beta V) was reconstructed to 3.2-nm resolution from images of frozen-hydrated virions. The distinctly icosahedral capsid (approximately 40-nm diameter) contains 240 copies of a single 61-kDa protein subunit arranged with T = 4 lattice symmetry. The o...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/1047-8477(90)90105-l

    authors: Olson NH,Baker TS,Johnson JE,Hendry DA

    更新日期:1990-10-01 00:00:00

  • Symmetry: A guide to its application in 2D electron crystallography.

    abstract::A defining property of a crystal is its symmetry. This mini-review sets out to summarize all aspects that define 2D crystallographic symmetry as applied to the study of macromolecular structure. It begins by defining molecular point symmetries, before covering crystallographic symmetry operations in 2D, common notatio...

    journal_title:Journal of structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jsb.2007.07.002

    authors: Landsberg MJ,Hankamer B

    更新日期:2007-12-01 00:00:00

  • High precision size measurement of centromere 8 and the 8q24/c-myc gene region in metaphase and interphase human fibroblasts indicate differential condensation.

    abstract::The hypothesis that distinct chromatin domains expand and are remodelled differently when they undergo transcription, replication or cell cycle processes is well accepted. The condensation changes by which chromosomes are transformed at the metaphase-interphase transition are especially interesting and therefore exten...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2008.09.002

    authors: Batram C,Baddeley D,Kreth G,Cremer C

    更新日期:2008-12-01 00:00:00

  • Variation in human hair ultrastructure among three biogeographic populations.

    abstract::Human scalp hairs are often examined microscopically to study the variation and diversity among a range of visible morphological traits. In this study, we focused on the ultrastructure of human scalp hair within its keratinized matrix, emphasizing, the density and distribution of melanosomes, variation in cuticle thic...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2018.11.008

    authors: Koch SL,Shriver MD,Jablonski NG

    更新日期:2019-01-01 00:00:00

  • Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

    abstract::A new method for the flexible fitting of high-resolution structures into low-resolution maps of macromolecular complexes from electron microscopy has been recently described in applications to simulated electron density maps. This method uses a linear combination of low-frequency normal modes in an iterative manner to...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2004.03.002

    authors: Tama F,Miyashita O,Brooks CL 3rd

    更新日期:2004-09-01 00:00:00

  • The avian malaria parasite Plasmodium gallinaceum causes marked structural changes on the surface of its host erythrocyte.

    abstract::Using a combination of atomic force, scanning and transmission electron microscopy, we found that avian erythrocytes infected with the avian malaria parasite Plasmodium gallinaceum develop approximately 60 nm wide and approximately 430 nm long furrow-like structures on the surface. Furrows begin to appear during the e...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2008.03.005

    authors: Nagao E,Arie T,Dorward DW,Fairhurst RM,Dvorak JA

    更新日期:2008-06-01 00:00:00

  • Electron diffraction and high-resolution imaging on highly-crystalline β-chitin microfibril.

    abstract::The ultrastructure of β-chitin microfibrils from a centric diatom, Thalassiosira, and a tubeworm, Lamellibrachia, was studied using electron diffraction and high-resolution electron microscopy. Electron microdiffraction diagrams corresponding to each projection of the β-chitin crystals were obtained, and all the data ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2011.07.001

    authors: Ogawa Y,Kimura S,Wada M

    更新日期:2011-10-01 00:00:00

  • Collagen matrix remodeling in 3-dimensional cellular space resolved using second harmonic generation and multiphoton excitation fluorescence.

    abstract::The structural remodeling of collagen is important in biological processes such as fibrosis, developmental morphogenesis and wound repair. Highly ordered collagen macromolecules produce second harmonic generation signals without the need for any exogenous label. Conversely, the cellular components stained with exogeno...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2009.07.023

    authors: Abraham T,Carthy J,McManus B

    更新日期:2010-01-01 00:00:00

  • Ultrastructure of familial amyloid polyneuropathy amyloid fibrils: examination with high-resolution electron microscopy.

    abstract::The ultrastructure of familial amyloid polyneuropathy (FAP) amyloid fibrils was examined with high-resolution electron microscopy and immunolabeling. Sural nerve biopsies from FAP (Met 30) patients as well as control tissues were prepared for thin-section observations. Extracellular spaces in the vicinity of myelinate...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1998.4052

    authors: Inoue S,Kuroiwa M,Saraiva MJ,Guimarães A,Kisilevsky R

    更新日期:1998-12-01 00:00:00

  • High-throughput production of human proteins for crystallization: the SGC experience.

    abstract::Producing purified human proteins with high yield and purity remains a considerable challenge. We describe the methods utilized in the Structural Genomics Consortium (SGC) in Oxford, resulting in successful purification of 48% of human proteins attempted; of those, the structures of approximately 40% were solved by X-...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2010.06.008

    authors: Savitsky P,Bray J,Cooper CD,Marsden BD,Mahajan P,Burgess-Brown NA,Gileadi O

    更新日期:2010-10-01 00:00:00

  • Fold prediction of VP24 protein of Ebola and Marburg viruses using de novo fragment assembly.

    abstract::Virus particle 24 (VP24) is the smallest protein of the Ebola and Marburg virus genomes. Recent experiments show that Ebola VP24 blocks binding of tyrosine-phosphorylated STAT-1 homodimer (PY-STAT1) to the NPI-1 subfamily of importin alpha, thereby preventing nuclear accumulation of this interferon-promoting transcrip...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2009.05.001

    authors: Lee MS,Lebeda FJ,Olson MA

    更新日期:2009-08-01 00:00:00

  • plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics.

    abstract::Here we introduce plusTipTracker, a Matlab-based open source software package that combines automated tracking, data analysis, and visualization tools for movies of fluorescently-labeled microtubule (MT) plus end binding proteins (+TIPs). Although +TIPs mark only phases of MT growth, the plusTipTracker software allows...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2011.07.009

    authors: Applegate KT,Besson S,Matov A,Bagonis MH,Jaqaman K,Danuser G

    更新日期:2011-11-01 00:00:00

  • Photonic force microscope based on optical tweezers and two-photon excitation for biological applications.

    abstract::A new scanning probe microscope, the photonic force microscope (PFM), based on optical tweezers and two-photon absorption processes for biological applications is described. Optical tweezers are used to trap a fluorescent latex bead with a diameter of 200 nm in an aqueous solution in all three dimensions. The fluoresc...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1997.3880

    authors: Florin EL,Pralle A,Hörber JK,Stelzer EH

    更新日期:1997-07-01 00:00:00

  • Synchrotron microComputed Tomography of the mature bovine dentinoenamel junction.

    abstract::The mature dentinoenamel junction (DEJ) is viewed by some investigators and the current authors, not as a fossilized, sharp transition between enamel and dentin, but as a relatively broad structural transition zone including the mantle dentin and the inner aprismatic enamel. In this study, the DEJ structure in bovine ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2007.10.006

    authors: Stock SR,Vieira AE,Delbem AC,Cannon ML,Xiao X,Carlo FD

    更新日期:2008-02-01 00:00:00

  • Structure of the cytochrome complex SoxXA of Paracoccus pantotrophus, a heme enzyme initiating chemotrophic sulfur oxidation.

    abstract::The sulfur-oxidizing enzyme system (Sox) of the chemotroph Paracoccus pantotrophus is composed of several proteins, which together oxidize hydrogen sulfide, sulfur, thiosulfate or sulfite and transfers the gained electrons to the respiratory chain. The hetero-dimeric cytochrome c complex SoxXA functions as heme enzyme...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2005.09.002

    authors: Dambe T,Quentmeier A,Rother D,Friedrich C,Scheidig AJ

    更新日期:2005-12-01 00:00:00

  • Crystal structures of the ternary complex of APH(4)-Ia/Hph with hygromycin B and an ATP analog using a thermostable mutant.

    abstract::Aminoglycoside 4-phosphotransferase-Ia (APH(4)-Ia)/Hygromycin B phosphotransferase (Hph) inactivates the aminoglycoside antibiotic hygromycin B (hygB) via phosphorylation. The crystal structure of the binary complex of APH(4)-Ia with hygB was recently reported. To characterize substrate recognition by the enzyme, we d...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.05.023

    authors: Iino D,Takakura Y,Fukano K,Sasaki Y,Hoshino T,Ohsawa K,Nakamura A,Yajima S

    更新日期:2013-07-01 00:00:00

  • Automated image acquisition and processing using a new generation of 4K x 4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies.

    abstract::We have previously reported the development of AutoEM, a software package for semi-automated acquisition of data from a transmission electron microscope. In continuing efforts to improve the speed of structure determination of macromolecular assemblies by electron microscopy, we report here on the performance of a new...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/s1047-8477(03)00124-2

    authors: Zhang P,Borgnia MJ,Mooney P,Shi D,Pan M,O'Herron P,Mao A,Brogan D,Milne JL,Subramaniam S

    更新日期:2003-08-01 00:00:00

  • The structural characteristics of mononuclear-macrophage membrane observed by atomic force microscopy.

    abstract::Mononuclear macrophages are important immune cells in the organisms. The complicated membrane structure underlying the diverse functions of mononuclear-macrophage has been largely unresolved. As a representative of monocyte-derived macrophages, the membrane structure of PMA differentiated THP-1 cells was comprehensive...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2019.04.002

    authors: Tian Y,Wu Y,Liu L,He L,Gao J,Zhou L,Yu F,Yu S,Wang H

    更新日期:2019-06-01 00:00:00

  • Long-depth imaging of specific gene expressions in whole-mount mouse embryos with single-photon excitation confocal fluorescence microscopy and FISH.

    abstract::Long-depth imaging of specific gene expression in the midgestation whole-mount mouse embryo (WME) is demonstrated with single-photon excitation (1PE) confocal fluorescence microscopy and fluorescence in situ hybridization. Expression domains of Pax-6 mRNA transcripts were labeled with an in situ hybridization probe th...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.2000.4238

    authors: Palmes-Saloma C,Saloma C

    更新日期:2000-07-01 00:00:00

  • X-ray vs. NMR structure of N-terminal domain of δ-subunit of RNA polymerase.

    abstract::The crystal structure of the N-terminal domain of the RNA polymerase δ subunit (Nδ) from Bacillus subtilis solved at a resolution of 2.0Å is compared with the NMR structure determined previously. The molecule crystallizes in the space group C222(1) with a dimer in the asymmetric unit. Importantly, the X-ray structure ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2014.06.001

    authors: Demo G,Papoušková V,Komárek J,Kadeřávek P,Otrusinová O,Srb P,Rabatinová A,Krásný L,Žídek L,Sklenář V,Wimmerová M

    更新日期:2014-08-01 00:00:00

  • The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications.

    abstract::The emergence of electron tomography as a tool for three dimensional structure determination of cells and tissues has brought its own challenges for the preparation of thick sections. High pressure freezing in combination with freeze substitution provides the best method for obtaining the largest volume of well-preser...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2007.09.002

    authors: Sosinsky GE,Crum J,Jones YZ,Lanman J,Smarr B,Terada M,Martone ME,Deerinck TJ,Johnson JE,Ellisman MH

    更新日期:2008-03-01 00:00:00

  • Comparative spatial localization of protein-A-tagged and authentic yeast nuclear pore complex proteins by immunogold electron microscopy.

    abstract::The nuclear pore complex (NPC) mediates protein and RNP import in and RNA and RNP export out of the nucleus of eukaryotic cells. Due to its genetic tractability, yeast offers a versatile system for investigating the chemical composition and molecular architecture of the NPC. In this context, protein A tagging is a com...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.2000.4223

    authors: Fahrenkrog B,Aris JP,Hurt EC,Panté N,Aebi U

    更新日期:2000-04-01 00:00:00

  • Crystal structure of a carbohydrate induced homodimer of phospholipase A2 from Bungarus caeruleus at 2.1A resolution.

    abstract::This is the first crystal structure of a carbohydrate induced dimer of phospholipase A(2) (PLA(2)). This is an endogenous complex formed between two PLA(2) molecules and two mannoses. It was isolated from Krait venom (Bungarus caeruleus) and crystallized as such. The complete amino acid sequence of PLA(2) was determin...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2004.11.011

    authors: Singh G,Gourinath S,Sarvanan K,Sharma S,Bhanumathi S,Betzel Ch,Yadav S,Srinivasan A,Singh TP

    更新日期:2005-03-01 00:00:00

  • Crystallisation of CP43, a chlorophyll binding protein of photosystem II: an electron microscopy analysis of molecular packing.

    abstract::Microcrystals of the chlorophyll binding protein, CP43, isolated from spinach thylakoid membranes have been studied by electron microscopy both in negative stain and in vitreous ice. Image analyses of three characteristic views show that the crystals are built of five different layers perpendicular to the c-axis. Each...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.2000.4294

    authors: Büchel C,Morris E,Barber J

    更新日期:2000-09-01 00:00:00

  • Solution structure and phospho-PmrA recognition mode of PmrD from Klebsiella pneumoniae.

    abstract::In bacteria, the two-component system (TCS) is the most prevalent for sensing and transducing the environmental signals into the cell. In Salmonella, the small basic protein PmrD is found to protect phospho-PmrA and prolong the expression of PmrA-activated genes. In contrast, Escherichia coli PmrD fails to protect pho...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2010.06.007

    authors: Luo SC,Lou YC,Cheng HY,Pan YR,Peng HL,Chen C

    更新日期:2010-12-01 00:00:00

  • Improving coiled coil stability while maintaining specificity by a bacterial hitchhiker selection system.

    abstract::The design and selection of peptides targeting cellular proteins is challenging and often yields candidates with undesired properties. Therefore we deployed a new selection system based on the twin-arginine translocase (TAT) pathway of Escherichia coli, named hitchhiker translocation (HiT) selection. A pool of α-helix...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2014.03.002

    authors: Kükenshöner T,Wohlwend D,Niemöller C,Dondapati P,Speck J,Adeniran AV,Nieth A,Gerhardt S,Einsle O,Müller KM,Arndt KM

    更新日期:2014-06-01 00:00:00

  • The fibrils of Ure2p homologs from Saccharomyces cerevisiae and Saccharoymyces paradoxus have similar cross-β structure in both dried and hydrated forms.

    abstract::The ability to convert into amyloid fibrils is a common feature of prion proteins. However, not all amyloid-forming proteins act as prions. Here, we compared two homologs of the yeast prion protein Ure2 from Saccharomyces cerevisiae and Saccharomyces paradoxus, ScUre2p and SpUre2p, which have different prion propensit...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2011.03.008

    authors: Wang YQ,Bongiovanni M,Gras SL,Perrett S

    更新日期:2011-06-01 00:00:00

  • Structure of the Ni/Fe-S protein subcomponent of the acetyl-CoA decarbonylase/synthase complex from Methanosarcina thermophila at 26-A resolution.

    abstract::The acetyl-CoA decarbonylase/synthase (ACDS) complex is responsible for synthesis and cleavage of acetyl-CoA in methanogens. The complex is composed of five different subunits, with a probable stoichiometry of alpha(8)beta(8)gamma(8)delta(8)epsilon(8). The native molecular mass of a subcomponent of the ACDS complex fr...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1999.4163

    authors: Kocsis E,Kessel M,DeMoll E,Grahame DA

    更新日期:1999-12-15 00:00:00