Abstract:
:Oligonucleotide array comparative genomic hybridization (aCGH) was applied on fifteen gastric cancer (GCA) samples to reveal information of DNA copy number changes at an exon-level resolution. Twelve of the samples represented the intestinal (IGCA) and three the diffuse (DGCA) type of GCA. The samples had previously been assessed for genetic stability by microsatellite analysis and categorized into microsatellite phenotypes according to the type of alterations. As compared to our previous results obtained using cDNA platforms, the oligonucleotide platforms revealed more aberrations per sample (0-45 vs. 0-22). A total of 22 amplifications were detected by the oligonucleotide arrays. Ten of the amplicons had also been detected on the cDNA platform, but five of them spanned only one or a few cDNA clones, thus resembling apparent outliers. Two tumors showed five or more amplifications by oligonucleotide aCGH, suggesting the presence of an amplifier phenotype. The amplifications occurred irrespective of the microsatellite phenotypes. None of the DGCA tumors showed more than one aberration, whereas the IGCA tumors showed several aberrations. The increased resolution of the oligonucleotide arrays enabled the detection of amplicon boundaries at gene level, allowing, e.g., the determination of the 17q12 core amplicon and interstitial losses within the 8p23.1-->p22 and 20q13.2-->q13.1 amplifications. Previously no losses have been reported within amplified regions in GCA. In addition to novel amplified regions, the oligonucleotide array results describe novel targets for amplicons at 8p11 (SFRP1), 11p12 (LRRC4C), and 19q13.2 (CEACAM6).
journal_name
Cytogenet Genome Resjournal_title
Cytogenetic and genome researchauthors
Vauhkonen H,Vauhkonen M,Sipponen P,Knuutila Sdoi
10.1159/000109617subject
Has Abstractpub_date
2007-01-01 00:00:00pages
39-45issue
1-2eissn
1424-8581issn
1424-859Xpii
000109617journal_volume
119pub_type
杂志文章abstract::In order to contribute to the knowledge of type and frequency of chromosome abnormalities in early pregnancy losses, we analyzed the cytogenetic results from a large series of first trimester miscarriages, using a diagnostic approach with a high success rate and no maternal contamination. A total of 1,119 consecutive ...
journal_title:Cytogenetic and genome research
pub_type: 杂志文章
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abstract::The X chromosomes of the extant equids, in general, share morphology and banding pattern similarities. However, the donkey X is, in part, an exception because of significantly different centromeric index and variant banding patterns in the pericentromeric region. To verify the underlying molecular basis of this differ...
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abstract::An integrated genetic linkage map was developed for the turkey (Meleagris gallopavo) that combines the genetic markers from the three previous mapping efforts. The UMN integrated map includes 613 loci arranged into 41 linkage groups. An additional 105 markers are tentatively placed within linkage groups based on two-p...
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journal_title:Cytogenetic and genome research
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journal_title:Cytogenetic and genome research
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abstract::Among various causes responsible for infertility, it has been admitted for a long time that male infertility can be due to impaired spermatogenesis and/or balanced structural chromosomal abnormalities. Sperm DNA fragmentation is also considered as another cause of infertility. Most of the studies on male infertility h...
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journal_title:Cytogenetic and genome research
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journal_title:Cytogenetic and genome research
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journal_title:Cytogenetic and genome research
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doi:10.1159/000448905
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journal_title:Cytogenetic and genome research
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journal_title:Cytogenetic and genome research
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doi:10.1159/000504424
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journal_title:Cytogenetic and genome research
pub_type: 杂志文章
doi:10.1159/000184693
更新日期:2008-01-01 00:00:00
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journal_title:Cytogenetic and genome research
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更新日期:2012-01-01 00:00:00
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更新日期:2013-01-01 00:00:00
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journal_title:Cytogenetic and genome research
pub_type: 杂志文章,评审
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更新日期:2005-01-01 00:00:00
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journal_title:Cytogenetic and genome research
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更新日期:2014-01-01 00:00:00
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journal_title:Cytogenetic and genome research
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更新日期:2005-01-01 00:00:00
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更新日期:2005-01-01 00:00:00
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journal_title:Cytogenetic and genome research
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更新日期:2004-01-01 00:00:00
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journal_title:Cytogenetic and genome research
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更新日期:2003-01-01 00:00:00
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更新日期:2016-01-01 00:00:00
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