Comparative mapping in equids: the asine X chromosome is rearranged compared to horse and Hartmann's mountain zebra.

Abstract:

:The X chromosomes of the extant equids, in general, share morphology and banding pattern similarities. However, the donkey X is, in part, an exception because of significantly different centromeric index and variant banding patterns in the pericentromeric region. To verify the underlying molecular basis of this difference, twelve equine BAC clones were FISH mapped to donkey (EAS) and Hartmann's mountain zebra (EZH) metaphase spreads. Loci from the terminal region of Xp and distal to terminal regions of the Xq showed the same order and relative position in all three species, implying cross-species conservation of these chromosomal segments. However, loci from the proximal/pericentromeric regions of either arms showed similar FISH locations in horse and zebra but a slightly deviant location and relative position in the donkey. Three of the markers (tel-OTC, TRAP170 and (ps)ALDH2- cen) located on the short arm of ECAX and EZHX were found inverted on the long arm of EASX, along with the transposition of the centromere. This molecular evidence of a pericentromeric inversion helps define the likely evolutionary breakpoints causing the rearrangement. The breakpoints most likely correspond to the region between Xp16-->q12 in the horse and Xp12-->q13 in the donkey. The findings coupled with the highly conserved X-chromosome gene order between horse and outgroup species, human and cat, suggest that the equine type X is ancestral while the asine type X arose as a result of an independent inversion event. The study adds two new markers to horse, 11 to donkey and 12 to Hartmann's zebra gene maps, thus contributing to the expansion of comparative maps in the equids.

journal_name

Cytogenet Genome Res

authors

Raudsepp T,Lear TL,Chowdhary BP

doi

10.1159/000063050

keywords:

subject

Has Abstract

pub_date

2002-01-01 00:00:00

pages

206-9

issue

1-4

eissn

1424-8581

issn

1424-859X

pii

63050

journal_volume

96

pub_type

杂志文章
  • Genetic characterization of a sheep-dwarf goat hybrid.

    abstract::Twelve weeks after repeated spontaneous mating between a Bentheimer Landschaf ram and a West African dwarf doe was observed, the doe aborted a dead fetus. The aim of this study was to verify the parentage and the species of the supposed parents and the hybrid status of the fetus, using cytogenetic and molecular geneti...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000227841

    authors: Lühken G,Wagner HW,Seichter D,Hecht W,Erhardt G

    更新日期:2009-01-01 00:00:00

  • Differential loss of expression of common fragile site genes between oral tongue and oropharyngeal squamous cell carcinomas.

    abstract::The common fragile sites (CFSs) are large regions of profound genomic instability found in all individuals. A number of the CFSs have been found to span genes that extend over large genomic regions (>700 kb). The expression of these genes is frequently abrogated in a number of different cancers and several of them hav...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000138886

    authors: Soderberg C,Perez DS,Ukpo OC,Liang X,O'Reilly AG,Moore EJ,Kademani D,Smith DI

    更新日期:2008-01-01 00:00:00

  • A prevalent Y;15 translocation in the Ethiopian Beta Israel community in Israel.

    abstract::We describe 7 cases of abnormal karyotypes involving chromosomes Y and 15 in Ethiopian Beta Israel patients: 46,XX, der(15)t(Y;15)(q12;p12) and 46,XY,der(15)t(Y;15)(q12;p12). Six cases were incidentally found in amniocentesis performed for various indications; the indication for karyotyping in 1 case was recurrent abo...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000336201

    authors: Chen-Shtoyerman R,Josefsberg Ben-Yehoshua S,Nissani R,Rosensaft J,Appelman Z

    更新日期:2012-01-01 00:00:00

  • Classical and Molecular Cytogenetics of the Panther Genet Genetta maculata (Mammalia, Carnivora, Viverridae).

    abstract::Genets (Genetta) are a genus of African mammalian carnivorans with 14 currently recognized species, although taxonomic uncertainties remain, particularly regarding the number of species within the large-spotted genet complex. This study presents the first banded karyotype and molecular cytogenetic analysis of a geneti...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000450627

    authors: Matoso Silva R,Adega F,Kjöllerström HJ,Labuschagne K,Kotze A,Fernandes C,Chaves R,do Mar Oom M

    更新日期:2016-01-01 00:00:00

  • Chromosome studies of European cyprinid fishes: cross-species painting reveals natural allotetraploid origin of a Carassius female with 206 chromosomes.

    abstract::A single female with 206 chromosomes and another 26 females with 156 chromosomes identified as Prussian carp, Carassius gibelio, and 5 individuals with 100 chromosomes identified as crucian carp, C. carassius, were sampled during field survey in one locality in the upper Elbe River. To identify the origin of females w...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000350689

    authors: Knytl M,Kalous L,Symonová R,Rylková K,Ráb P

    更新日期:2013-01-01 00:00:00

  • WWOX, the common chromosomal fragile site, FRA16D, cancer gene.

    abstract::Gross chromosomal rearrangements and aneuploidy are among the most common somatic genomic abnormalities that occur during cancer initiation and progression, in particular in human solid tumor carcinogenesis. The loss of large chromosomal regions as consequence of gross rearrangements (e.g. deletions, monosomies, unbal...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000072844

    authors: Ludes-Meyers JH,Bednarek AK,Popescu NC,Bedford M,Aldaz CM

    更新日期:2003-01-01 00:00:00

  • A 3.4-kbp transcript of ZNF331 is solely expressed in follicular thyroid adenomas.

    abstract::Translocations involving chromosomal region 19q13 are a frequent finding in follicular adenomas of the thyroid and might represent the most frequent type of structural aberration in human epithelial tumors. By positional cloning, a putative candidate gene, ZNF331 (formerly RITA) located close to the breakpoint was ide...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000074165

    authors: Meiboom M,Murua Escobar H,Pentimalli F,Fusco A,Belge G,Bullerdiek J

    更新日期:2003-01-01 00:00:00

  • Biallelic expression of Z-linked genes in male chickens.

    abstract::In birds, females are heterogametic (ZW), while males are homogametic (ZZ). It has been proposed that there is no dosage compensation for the expression of Z-linked genes in birds. In order to examine if the genes are inactivated on one of the two Z chromosomes, we analyzed the allelic expression of the B4GALT1 and CH...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000071609

    authors: Kuroiwa A,Yokomine T,Sasaki H,Tsudzuki M,Tanaka K,Namikawa T,Matsuda Y

    更新日期:2002-01-01 00:00:00

  • Meiotic Recombination in the Giraffe (G. reticulata).

    abstract::Recently, the reticulated giraffe (G. reticulata) was identified as a distinct species, which emphasized the need for intensive research in this interesting animal. To shed light on the meiotic process as a source of biodiversity, we analysed the frequency and distribution of meiotic recombination in 2 reticulated gir...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000478684

    authors: Vozdova M,Fröhlich J,Kubickova S,Sebestova H,Rubes J

    更新日期:2017-01-01 00:00:00

  • Strand-specific fluorescence in situ hybridization: the CO-FISH family.

    abstract::The ability to prepare single-stranded chromosomal target DNA allows innovative uses of FISH technology for studies of chromosome organization. Standard FISH methodologies require functionally single-stranded DNAs in order to facilitate hybridization between the probe and the complementary chromosomal target sequence....

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000079565

    authors: Bailey SM,Goodwin EH,Cornforth MN

    更新日期:2004-01-01 00:00:00

  • Concurrent Loss of Heterozygosity and Mosaic Deletion of 12p13.32pter.

    abstract::Deletions in the short arm of chromosome 12 are the rarest subtelomeric imbalances. Less than 20 patients have been reported to date, and their microdeletions were identified either by FISH or array-CGH without SNP data. Here, we report a patient with a 12p13.32pter mosaic deletion detected by chromosome microarray an...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000445853

    authors: Faria RS,de Oliveira CP,da Costa MM,da S Rosa MT,Córdoba MS,Pic-Taylor A,Ferrari I,de Oliveira SF,Mazzeu JF

    更新日期:2016-01-01 00:00:00

  • New mouse genetic models for human contraceptive development.

    abstract::Genetic strategies for the post-genomic sequence age will be designed to provide information about gene function in a myriad of physiological processes. Here an ENU mutagenesis program (http://reprogenomics.jax.org) is described that is generating a large resource of mutant mouse models of infertility; male and female...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000078192

    authors: Lessard C,Pendola JK,Hartford SA,Schimenti JC,Handel MA,Eppig JJ

    更新日期:2004-01-01 00:00:00

  • Comparative molecular cytogenetic studies in the order Carnivora: mapping chromosomal rearrangements onto the phylogenetic tree.

    abstract::We have made a set of chromosome-specific painting probes for the American mink by degenerate oligonucleotide primed-PCR (DOP-PCR) amplification of flow-sorted chromosomes. The painting probes were used to delimit homologous chromosomal segments among human, red fox, dog, cat and eight species of the family Mustelidae...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000063032

    authors: Graphodatsky AS,Yang F,Perelman PL,O'Brien PC,Serdukova NA,Milne BS,Biltueva LS,Fu B,Vorobieva NV,Kawada SI,Robinson TJ,Ferguson-Smith MA

    更新日期:2002-01-01 00:00:00

  • Contrasting Rates of LINE-1 Amplification among New World Primates of the Atelidae Family.

    abstract::LINE-1 (L1) retrotransposons constitute the dominant category of transposons in mammalian genomes. L1 elements are active in the vast majority of mammals, and only a few cases of L1 extinction have been documented. The only possible case of extinction in primates was suggested for South American spider monkeys. Howeve...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000490481

    authors: Sookdeo A,Ruiz-García M,Schneider H,Boissinot S

    更新日期:2018-01-01 00:00:00

  • Cytogenetic mapping of H1 histone and ribosomal RNA genes in hybrids between catfish species Pseudoplatystoma corruscans and Pseudoplatystoma reticulatum.

    abstract::A physical chromosome mapping of the H1 histone and 5S and 18S ribosomal RNA (rRNA) genes was performed in interspecific hybrids of Pseudoplatystoma corruscans and P. reticulatum. The results showed that 5S rRNA clusters were located in the terminal region of 2 chromosomes. H1 histone and 18S ribosomal genes were co-l...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000345299

    authors: Hashimoto DT,Ferguson-Smith MA,Rens W,Prado FD,Foresti F,Porto-Foresti F

    更新日期:2013-01-01 00:00:00

  • Wing Membrane Biopsies for Bat Cytogenetics: Finding of 2n = 54 in Irish Rhinolophushipposideros (Rhinolophidae, Chiroptera, Mammalia) Supports Two Geographically Separated Chromosomal Variants in Europe.

    abstract::In Europe, 2 different diploid chromosome numbers, 2n = 54 and 2n = 56, have been described in the lesser horseshoe bat (Rhinolophushipposideros). The eastern form with 2n = 56 extends from the Czech Republic to Greece. To date, specimens with 54 chromosomes have been reported only from Spain and Germany. This study e...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000447111

    authors: Kacprzyk J,Teeling EC,Kelleher C,Volleth M

    更新日期:2016-01-01 00:00:00

  • Identification and Characterization of γ-Ray-Induced Mutations in Rice Cytoplasmic Genomes by Whole-Genome Sequencing.

    abstract::Chloroplasts and mitochondria are semi-autonomous organelles and have their own genomes (cytoplasmic genomes). Physical radiations (e.g., γ-rays) have been widely used in artificial mutation induction for plant germplasm enhancement and for breeding new cultivars. However, little is known at the genomic level about wh...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000506033

    authors: Zheng Y,Li S,Huang J,Fan L,Shu Q

    更新日期:2020-01-01 00:00:00

  • Karyotypic evolution in the Galliformes: an examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny.

    abstract::To define the process of karyotypic evolution in the Galliformes on a molecular basis, we conducted genome-wide comparative chromosome painting for eight species, i.e. silver pheasant (Lophura nycthemera), Lady Amherst's pheasant (Chrysolophus amherstiae), ring-necked pheasant (Phasianus colchicus), turkey (Meleagris ...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000078570

    authors: Shibusawa M,Nishibori M,Nishida-Umehara C,Tsudzuki M,Masabanda J,Griffin DK,Matsuda Y

    更新日期:2004-01-01 00:00:00

  • Development of a SCAR marker for the analysis of B chromosome presence in Partamona helleri (Hymenoptera, Apidae).

    abstract::Chromosomes in hymenopteran insects cannot currently be analysed in adult individuals. The only available cytogenetic techniques need to be performed in larvae. Here we develop and implement a SCAR (Sequence Characterized Amplified Region) marker, associated with B chromosomes in the bee Partamona helleri, which has p...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000097430

    authors: Tosta VC,Tavares MG,Fernandes-Salomão TM,Barros EG,Campos LA,Camacho JP

    更新日期:2007-01-01 00:00:00

  • High-resolution organization of mouse centromeric and pericentromeric DNA.

    abstract::We studied the organization of mouse satellite 3 and 4 (MS3 and MS4) in comparison with major (MaSat) and minor (MiSat) DNA sequences, located in the centromeric and pericentromeric regions of mouse telocentric chromosomes by fiber-FISH. The centromeric region consists of a small block of MiSat and MS3 followed by a p...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000089878

    authors: Kuznetsova I,Podgornaya O,Ferguson-Smith MA

    更新日期:2006-01-01 00:00:00

  • Genomic signatures of chromosomal instability and osteosarcoma progression detected by high resolution array CGH and interphase FISH.

    abstract::Osteosarcoma (OS) is characterized by an unstable karyotype which typically has a heterogeneous pattern of complex chromosomal abnormalities. High-resolution array comparative genomic hybridization (CGH) in combination with interphase fluorescence in situ hybridization (FISH) analyses provides a complete description o...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000151310

    authors: Selvarajah S,Yoshimoto M,Ludkovski O,Park PC,Bayani J,Thorner P,Maire G,Squire JA,Zielenska M

    更新日期:2008-01-01 00:00:00

  • Pesticides and the induction of aneuploidy in human sperm.

    abstract::Pesticides are some of the most frequently released toxic chemicals into the environment. Exposure to them has been associated with reproductive dysfunction, but the knowledge of the genotoxic risks of these substances is still limited. In vitro and in vivo, many pesticides are shown to induce aneuploidy. Analysis of ...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000086915

    authors: Härkönen K

    更新日期:2005-01-01 00:00:00

  • Chromosomal mechanisms underlying the karyotype evolution of the oriental voles (Muridae, Eothenomys).

    abstract::We have investigated the karyotype relationships of two oriental voles, i.e. the Yulong vole (Eothenomys proditor, 2n = 32) and the large oriental vole (Eothenomys miletus, 2n = 56) as well as the Clarke's vole (Microtus clarkei, 2n = 52), by a combined approach of cross-species chromosome painting and high-resolution...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000091928

    authors: Li T,Wang J,Su W,Yang F

    更新日期:2006-01-01 00:00:00

  • Reverse transcriptase and integrase of the Saccharomyces cerevisiae Ty1 element.

    abstract::Integrase (IN) and reverse transcriptase (RT) play a central role in transposition of retroelements. The mechanism of integration by IN and the steps of the replication process mediated by RT are briefly described here. Recently, active recombinant forms of Ty1 IN and RT have been obtained. This has allowed a more det...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000084960

    authors: Wilhelm FX,Wilhelm M,Gabriel A

    更新日期:2005-01-01 00:00:00

  • Genomic and Cytogenetic Characterization of a Balanced Translocation Disrupting NUP98.

    abstract::A 41-year-old Asian woman with bilateral renal angiomyolipomas (AML) was incidentally identified to have a balanced translocation, 46,XX,t(11;12)(p15.4;q15). She had no other features or family history to suggest a diagnosis of tuberous sclerosis. Her healthy daughter had the same translocation and no renal AML at the...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000479463

    authors: Thibodeau ML,Steinraths M,Brown L,Zong Z,Shomer N,Taubert S,Mungall KL,Ma YP,Mueller R,Birol I,Lehman A

    更新日期:2017-01-01 00:00:00

  • The chicken RH map: current state of progress and microchromosome mapping.

    abstract::The ChickRH6 radiation hybrid panel has been used to construct consensus chromosome radiation hybrid (RH) maps of the chicken genome. Markers genotyped were either from throughout the genome or targeted to specific chromosomes and a large proportion (one third) of data was the result of collaborative efforts. Altogeth...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000103160

    authors: Morisson M,Denis M,Milan D,Klopp C,Leroux S,Bardes S,Pitel F,Vignoles F,Gérus M,Fillon V,Douaud M,Vignal A

    更新日期:2007-01-01 00:00:00

  • Condensation of rye chromatin in somatic interphase nuclei of Ph1 and ph1b wheat.

    abstract::The Ph1 locus in hexaploid wheat (Triticum aestivum L.) enforces diploid-like behavior in the first metaphase of meiosis. To test the hypothesis that this chromosome pairing control is exercised by affecting the degree of chromatin condensation, the dispersion of rye chromatin in interphase nuclei in somatic tissues o...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000112072

    authors: Kopecky D,Allen DC,Duchoslav M,Dolezel J,Lukaszewski AJ

    更新日期:2007-01-01 00:00:00

  • Evidence of Rubus Yellow Net Virus Integration into the Red Raspberry Genome.

    abstract::Rubus yellow net virus (RYNV) infects Rubus spp., causing a severe decline when present in mixed infections with other viruses. RYNV belongs to the family Caulimoviridae, also known as plant pararetroviruses, which can exist as episomal or integrated elements (endogenous). Most of integrated pararetroviruses are nonin...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000509845

    authors: Diaz-Lara A,Mosier NJ,Stevens K,Keller KE,Martin RR

    更新日期:2020-01-01 00:00:00

  • A Small Supernumerary Marker Derived from the Pericentromeric Region of Chromosome 5: Case Report and Delineation of Partial Trisomy 5p Phenotype.

    abstract::A 17-year-old girl presented with a distinct phenotype mainly featuring craniofacial dysmorphism, including a disproportioned large, round, elongated face; hypertelorism; deep-set eyes with short palpebral fissures; obesity (BMI 37), and a neuropsychiatric disorder with high-functioning autism. Postnatal conventional ...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章

    doi:10.1159/000481331

    authors: Camerota L,Pitzianti M,Postorivo D,Nardone AM,Ligas C,Moretti C,Pasini A,Brancati F

    更新日期:2017-01-01 00:00:00

  • Epigenetic regulation of telomere maintenance.

    abstract::As chromatin structures, telomeres undergo epigenetic regulation of their maintenance and function. In plants, these processes are likely of a higher complexity than in animals or yeasts, as exemplified by methylation of cytosines in plant telomeric DNA or reversible developmental regulation of plant telomerase. We hi...

    journal_title:Cytogenetic and genome research

    pub_type: 杂志文章,评审

    doi:10.1159/000360775

    authors: Fojtová M,Fajkus J

    更新日期:2014-01-01 00:00:00