Characterization of frequently deleted 6q locus in prostate cancer.

Abstract:

:The long arm of chromosome 6 is frequently deleted in diverse human neoplasms. Our previous study showed a minimum deletion region between markers D6S1056 and D6S300 on chromosome 6q in primary prostate cancer (CaP). In this study, we further refined a 200-kb minimal region of deletion (6qTSG1) centered around D6S1013 marker. The 6qTSG1 transcripts contained complex multiple splicing variants with low or absent expression in CaP cells. None of the transcripts identified contained open reading frames that code for a protein in the NCBI database. The expression of 6qTSG transcripts revealed interesting hormonal regulation relevant to CaP biology. Expression of 6q TSG transcript was induced in LNCaP cells that were cultured in charcoal-stripped serum medium suggesting an upregulation of 6qTSG transcript by androgen ablation and cell growth inhibition/apoptosis. Induction of 6qTSG1 expression in response to androgen ablation was abrogated in androgen-independent derivatives of LNCaP cells. In summary, we have defined a candidate CaP suppressor locus on chromosome 6q16.1, and deletions of this locus are frequently associated with prostate tumorigenesis. In the light of emerging role of noncoding RNAs in cancer biology including CaP, future investigations of 6qTSG11 locus is warranted.

journal_name

DNA Cell Biol

journal_title

DNA and cell biology

authors

Sun M,Srikantan V,Ma L,Li J,Zhang W,Petrovics G,Makarem M,Strovel JW,Horrigan SG,Augustus M,Sesterhenn IA,Moul JW,Chandrasekharappa S,Zou Z,Srivastava S

doi

10.1089/dna.2006.25.597

subject

Has Abstract

pub_date

2006-11-01 00:00:00

pages

597-607

issue

11

eissn

1044-5498

issn

1557-7430

journal_volume

25

pub_type

杂志文章
  • Associations of fibroblast growth factor 21 gene 3' untranslated region single-nucleotide polymorphisms with metabolic syndrome, obesity, and diabetes in a Han Chinese population.

    abstract::Fibroblast growth factor 21 (FGF-21) is a novel regulator for metabolic syndrome (MetS), diabetes, and obesity. However, no study has been performed on the association of these diseases with FGF-21 gene polymorphism. The aim of the study was to investigate the association of 3' untranslated region (UTR) single-nucleot...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2011.1302

    authors: Zhang M,Zeng L,Wang YJ,An ZM,Ying BW

    更新日期:2012-04-01 00:00:00

  • Decreased Hnf-1 gene expression in mice homozygous for a 1.2-centiMorgan deletion on chromosome 7.

    abstract::The mammalian CYP2E1 gene encodes a cytochrome P450 enzyme that is markedly increased soon after birth. In vitro evidence suggests that the rat CYP2E1 gene is positively regulated by the transcription factor HNF-1 or a protein displaying DNA-binding properties similar to HNF-1. In contrast to newborn wild-type mice an...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1990.9.771

    authors: Gonzalez FJ,Liu SY,Kozak CA,Nebert DW

    更新日期:1990-12-01 00:00:00

  • Interleukin 35 Rescues Regulatory B Cell Function, but the Effect Is Dysregulated in Ulcerative Colitis.

    abstract::Ulcerative colitis (UC) is a long-time inflammatory condition arising from aberrant immune activation in the colon and the rectum. Interleukin (IL)-35 plays critical roles in autoimmune disorders. In this study, we explored the pathways of IL-35 in affecting UC. First, peripheral blood mononuclear cells (PBMCs) from U...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2016.3570

    authors: Wang S,Qin C

    更新日期:2017-05-01 00:00:00

  • Construction of a eukaryotic expression plasmid encoding partial S gene fragments of the SARS-CoV and its potential utility as a DNA vaccine.

    abstract::The spike (S) protein, a main surface antigen of the SARS coronavirus (SARS-CoV), is considered to be one of the most important protective antigen candidates for targets for vaccine design against the virus. In this study, a secreted recombinant expression plasmid, pVAX-S1, encoding the partial S protein with a signal...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2005.24.516

    authors: He H,Tang Y,Qin X,Xu W,Wang Y,Liu X,Liu X,Xiong S,Li J,Zhang M,Duan M

    更新日期:2005-08-01 00:00:00

  • Differential responses of normal human melanocytes to intra- and extracellular dsRNA.

    abstract::Viral factor has been implicated in the etiopathogenesis of vitiligo. To elucidate the effects of viral double-stranded RNA (dsRNA) on melanocytes and to explore the underlying mechanisms, primary cultured normal human melanocytes were treated with synthetic viral dsRNA analog poly(I:C). The results demonstrated that ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2014.2711

    authors: Wang S,Liu D,Jin R,Zhu Y,Xu A

    更新日期:2015-06-01 00:00:00

  • Association between single-nucleotide polymorphisms in pre-miRNAs and the risk of asthma in a Chinese population.

    abstract::Single-nucleotide polymorphisms (SNPs) in pre-miRNAs may alter microRNA (miRNA) expression levels or processing and contribute to susceptibility to a wide range of diseases. We investigated the correlation between four SNPs (rs11614913, rs3746444, rs2910164, and rs229283) in pre-miRNAs and the risk of asthma in 220 as...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2010.1164

    authors: Su XW,Yang Y,Lv ML,Li LJ,Dong W,Miao-Liao,Gao LB,Luo HB,Yun-Liu,Cong RJ,Liang WB,Li YB

    更新日期:2011-11-01 00:00:00

  • Age-related macular degeneration and association of CFH Y402H and LOC387715 A69S polymorphisms in a Turkish population.

    abstract::Age-related macular degeneration (AMD) is a disease with multifactorial etiology characterized by irreversible loss of central visual acuity. The discovery of susceptive single-nucleotide polymorphisms (SNPs) has progressed our understanding of AMD. Complement factor H (CFH) gene Y402H polymorphism and high-temperatur...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2011.1214

    authors: Soysal Y,Inan UÜ,Küsbeci T,Imirzalioğlu N

    更新日期:2012-03-01 00:00:00

  • Regenerative medicine for diseases of the head and neck: principles of in vivo regeneration.

    abstract::The application of endogenous regeneration in regenerative medicine is based on the concept of inducing regeneration of damaged or lost tissues from residual tissues in situ. Therefore, endogenous regeneration is also termed in vivo regeneration as opposed to mechanisms of ex vivo regeneration which are applied, for e...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/104454903322405464

    authors: Löwenheim H

    更新日期:2003-09-01 00:00:00

  • Evaluation of DNA double strand breaks repair efficiency in head and neck cancer.

    abstract::Head and neck cancers (head and neck squamous cell carcinomas [HNSCC]) are a heterogeneous group of neoplasms with varying presenting symptoms, treatment, and expected outcome. There is a need to find an effective way of its treatment at the molecular level. Thus, we should identify the mechanism of cancer cell respon...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2011.1325

    authors: Walczak A,Rusin P,Dziki L,Zielinska-Blizniewska H,Olszewski J,Majsterek I

    更新日期:2012-03-01 00:00:00

  • Cloning and characterization of buffalo NANOG gene: alternative transcription start sites, splicing, and polyadenylation in embryonic stem cell-like cells.

    abstract::NANOG is a critical homeodomain transcription factor responsible for maintaining embryonic stem cell (ESC) self-renewal and pluripotency. In the present study, we isolated, sequenced, and characterized the NANOG gene in buffalo ESC-like cells. Here, we demonstrated that NANOG mRNA is expressed as multiple isoforms and...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2011.1410

    authors: Singh N,Sharma R,George A,Singla SK,Palta P,Manik R,Chauhan MS,Singh D

    更新日期:2012-05-01 00:00:00

  • Association Between Functional Polymorphisms of DNA Double-Strand Breaks in Repair Genes XRCC5, XRCC6 and XRCC7 with the Risk of Systemic Lupus Erythematosus in South East Iran.

    abstract::DNA repair is reduced in patients suffering from systemic lupus erythematosus (SLE), and it can induce the production of autoreactive antibodies due to the accumulation of DNA damage and nucleoprotein that produce immunogenic antigens. The accumulations of anti-Ku and DNA-PKcs antibodies, which are involved in nonhomo...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2014.2465

    authors: Jahantigh D,Salimi S,Mousavi M,Moossavi M,Mohammadoo-Khorasani M,Narooei-nejad M,Sandoughi M

    更新日期:2015-05-01 00:00:00

  • Regulation of mouse Ah receptor (Ahr) gene basal expression by members of the Sp family of transcription factors.

    abstract::The aromatic hydrocarbon receptor (AHR) is a ligand-activated transcription factor that regulates the expression of several drug-metabolizing enzymes and has been implicated in immunosuppression, teratogenesis, cell-specific hyperplasia, and certain types of malignancies and toxicities. The mouse Ahr gene 5' proximal ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1998.17.811

    authors: Fitzgerald CT,Nebert DW,Puga A

    更新日期:1998-09-01 00:00:00

  • Chicken ovalbumin upstream promoter-transcription factor, hepatocyte nuclear factor 3, and CCAAT/enhancer binding protein control the far-upstream enhancer of the rat alpha-fetoprotein gene.

    abstract::We have further characterized the most distal of the three alpha-fetoprotein (AFP) enhancers required for expression of the AFP gene in fetal hepatocytes and yolk sac endodermal cells. Almost total rat AFP enhancer 3 (E3) activity is driven by a 160-bp fragment at -6 kb containing three target regions for nuclear prot...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1996.15.1063

    authors: Thomassin H,Bois-Joyeux B,Delille R,Ikonomova R,Danan JL

    更新日期:1996-12-01 00:00:00

  • Enhancer, repressor, and promoter specificities combine to regulate the rat alpha-fetoprotein gene.

    abstract::The upstream transcription control region of the rat alpha-fetoprotein (AFP) gene was analyzed using transient expression of CAT genes in HepG2 cells which express the gene; H4C3 cells which repress the AFP gene but express the albumin gene; and four nonexpressing cell lines. Deletion analysis based on the DNA sequenc...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1991.10.525

    authors: Wen P,Groupp ER,Buzard G,Crawford N,Locker J

    更新日期:1991-09-01 00:00:00

  • Comparison of intestinal phospholipase A/lysophospholipase and sucrase-isomaltase genes suggest a common structure for enterocyte-specific promoters.

    abstract::Intestinal phospholipase A/lysophospholipase (IPAL) is an intestine-specific brush-border enzyme expressed during development and along the intestinal crypt-villus axis in a pattern similar to another well characterized brush-border enzyme, sucrase-isomaltase (SI). A tissue-specific DNase I hypersensitive site was ide...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.1419

    authors: Taylor JK,Boll W,Levy T,Suh E,Siang S,Mantei N,Traber PG

    更新日期:1997-12-01 00:00:00

  • Glucose response elements in a gene that codes for 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.

    abstract::We have shown previously that rat hepatoma FTO-2B cells express two mRNAs, called F (fetal) and L (liver), from distinct promoters of the same gene coding for 6-phosphofructo-2-kinase (PFK-2). This enzyme catalyzes the synthesis of fructose 2,6-bisphosphate, an allosteric stimulator of glycolysis. We have now found th...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.1075

    authors: Dupriez VJ,Rousseau GG

    更新日期:1997-09-01 00:00:00

  • CpG array analysis of histone H3 lysine 4 trimethylation in peripheral blood mononuclear cells of uremia patients.

    abstract::Studies of the epigenome have attracted little interest in nephrology, especially in uremia. Several lines of evidence have suggested that there are links between genomic DNA hypomethylation and cardiovascular complications in uremia patients. However, to date, our knowledge about the alterations in histone methylatio...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2010.1076

    authors: Zhang L,Dai Y,Wang L,Peng W,Zhang Y,Ou Y,Lu J

    更新日期:2011-03-01 00:00:00

  • Expression of the proto-oncogene Axl in renal cell carcinoma.

    abstract::In this investigation, we examined the role of the Axl proto-oncogene in renal cell carcinoma (RCC). Axl is a tyrosine kinase receptor implicated in myeloid leukogenesis, and has been found to be overexpressed in lung cancers and breast cancers. Axl has been described to act as a mitogenic factor along with its ligand...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/10445490360708946

    authors: Chung BI,Malkowicz SB,Nguyen TB,Libertino JA,McGarvey TW

    更新日期:2003-08-01 00:00:00

  • Developmental gonadal expression of the transcription factor SET and its target gene, P450c17 (17alpha-hydroxylase/c17,20 lyase).

    abstract::Cytochrome P450c17 catalyzes the 17alpha-hydroxylase/17,20 lyase activity needed for sex steroid synthesis. We recently characterized the nuclear phosphoprotein SET as a novel transcriptional regulator that binds to the -447/-399 region of the rat P450c17 gene, along with the transcription factors COUP-TF II, NGF-IB, ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454901753340604

    authors: Zhang P,Compagnone NA,Fiore C,Vigne JL,Culp P,Musci TJ,Mellon SH

    更新日期:2001-10-01 00:00:00

  • Optimization of gene transfer into neonatal rat cardiomyocytes and unmasking of cytomegalovirus promoter silencing.

    abstract::Cardiomyocytes are notoriously difficult to transfect using standard techniques unless viral vectors such as recombinant adenoviruses are used. Generation of recombinant adenoviruses is, however, a complex and time-consuming procedure and not possible for every DNA construct. We therefore optimized DNA/polylysine/aden...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2005.24.381

    authors: Bauer S,Maier SK,Neyses L,Maass AH

    更新日期:2005-06-01 00:00:00

  • Functional dissection of the HNF-1alpha transcription factor: a study on nuclear localization and transcriptional activation.

    abstract::Hepatocyte nuclear factor-1alpha (HNF-1alpha) is a homeodomain-containing transcription factor regulating the expression of liver and pancreas-specific genes. Mutations in the HNF-1alpha-encoding gene TCF1 cause maturity-onset diabetes of the young, type 3 (MODY3). These mutations may affect nuclear import or reduce t...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2005.24.661

    authors: Bjørkhaug L,Bratland A,Njølstad PR,Molven A

    更新日期:2005-11-01 00:00:00

  • HGF Gene Delivering Alginate/Galactosylated Chitosan Sponge Scaffold for Three-Dimensional Coculture of Hepatocytes/3T3 Cells.

    abstract::Gene delivery from tissue engineering scaffold is a novel strategy in regulating long-term growth and function of cells in vitro culture. In this study, a hepatocyte growth factor plasmid/polyetherimide (pHGF/PEI) polyplex delivering alginate (AL)/galactosylated chitosan (GC) (pHGF/PEI-AL/GC) sponge scaffold was prepa...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2019.5136

    authors: Gao C,Yang Y,Zhang Y,Qian M,Yang J

    更新日期:2020-03-01 00:00:00

  • Molecular cloning and baculovirus expression of the rabbit corneal aldehyde dehydrogenase (ALDH1A1) cDNA.

    abstract::Most mammalian species express high concentrations of ALDH3A1 in corneal epithelium with the exception of the rabbit, which expresses high amounts of ALDH1A1 rather than ALDH3A1. Several hypotheses that involve catalytic and/or structural functions have been postulated regarding the role of these corneal ALDHs. The ai...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454903322216671

    authors: Manzer R,Qamar L,Estey T,Pappa A,Petersen DR,Vasiliou V

    更新日期:2003-05-01 00:00:00

  • Retinol in avian oogenesis: molecular properties of the carrier protein.

    abstract::Normal embryo development in oviparous (egg-laying) species requires the coordinated targeting to growing oocytes of nutrients and regulatory molecules such as retinol, the precursor of active retinoids. Serum retinol-binding protein (RBP) is the major carrier protein for retinol in the circulatory system of vertebrat...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1995.14.403

    authors: Vieira AV,Kuchler K,Schneider WJ

    更新日期:1995-05-01 00:00:00

  • Ferroptosis Is Involved in Diabetes Myocardial Ischemia/Reperfusion Injury Through Endoplasmic Reticulum Stress.

    abstract::Myocardial ischemic disease affects the prognosis in perioperative patients. Diabetes can aggravate myocardial injury. The purpose of this research is to investigate the effect of ferroptosis in the process of diabetes mellitus (DM) myocardial ischemia/reperfusion (I/R) injury (IRI). Endoplasmic reticulum stress (ERS)...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2019.5097

    authors: Li W,Li W,Leng Y,Xiong Y,Xia Z

    更新日期:2020-02-01 00:00:00

  • The Emerging Roles of Long Noncoding RNAs in Bone Homeostasis and Their Potential Application in Bone-Related Diseases.

    abstract::Increasing evidence has announced the emerging roles of long noncoding RNAs (lncRNAs) in modulating bone homeostasis due to their potential regulating effects on bone-related cells' proliferation, migration, differentiation and apoptosis. Thus, lncRNAs have been considered as a promising gene tool to facilitate the bo...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.2020.5391

    authors: Song W,Xie J,Li J,Bao C,Xiao Y

    更新日期:2020-06-01 00:00:00

  • The transcriptional factor Egr-1 is synthesized by baculovirus-infected insect cells in an active, DNA-binding form.

    abstract::The Egr-1 (zfp-6) gene encodes a zinc-finger-containing nuclear protein that is rapidly and transiently induced in quiescent cells treated with mitogens. We have constructed baculovirus vectors that synthesize mouse Egr-1 protein initiating at two putative ATG start sites. The ATG site producing the larger protein (Mr...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1991.10.61

    authors: Ragona G,Edwards SA,Mercola DA,Adamson ED,Calogero A

    更新日期:1991-01-01 00:00:00

  • Comparative Transcriptomics Reveals the Expression Differences Between Four Developmental Stages of American Cockroach (Periplaneta americana).

    abstract::The globally distributed American cockroach (Periplaneta americana) is considered a pest, but it has been widely used in traditional Chinese medicine. In the past, the American cockroach's genome and transcriptomes were sequenced, but the differential expression transcripts between developmental stages were unavailabl...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4578

    authors: Zeng C,Li W,Liao Q,Yan T,Wang K,Hu Y,Shen Y,Price M,Fan Z,Zhang X,Yue B,Geng F,Chen L

    更新日期:2019-10-01 00:00:00

  • Identification of a Multi-RNA-Type-Based Signature for Recurrence-Free Survival Prediction in Patients with Uterine Corpus Endometrial Carcinoma.

    abstract::Uterine corpus endometrial carcinoma (UCEC) is one of the leading causes of death from gynecological cancer due to the high recurrence rate. A recent study indicated that molecular biomarkers can enhance the recurrence prediction power if they were integrated with clinical information. In this study, we attempted to i...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2019.5148

    authors: Wang P,Zeng Z,Shen X,Tian X,Ye Q

    更新日期:2020-04-01 00:00:00

  • Regulation of cytokine-induced neutrophil chemoattractant (CINC) mRNA production in cultured rat cells.

    abstract::Rat cytokine-induced neutrophil chemoattractant (CINC) is an 8-kD polypeptide originally purified from media conditioned by interleukin-1 beta (IL-1 beta)-stimulated 52E, an epithelioid clone derived from the normal rat kidney (NRK) cell line. Using a fibroblastic clone of NRK cells, 49F, we found that lipopolysacchar...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1994.13.883

    authors: Dolecki GJ,Delarco JE

    更新日期:1994-09-01 00:00:00