Abstract:
:Despite the prevalence of transposable elements in the genomes of higher eukaryotes, what is virtually unknown is how they amplify to very high copy numbers without killing their host. Here, we report the discovery of rice strains where a miniature inverted-repeat transposable element (mPing) has amplified from approximately 50 to approximately 1,000 copies in four rice strains. We characterized 280 of the insertions and found that 70% were within 5 kb of coding regions but that insertions into exons and introns were significantly underrepresented. Further analyses of gene expression and transposable-element activity demonstrate that the ability of mPing to attain high copy numbers is because of three factors: (i) the rapid selection against detrimental insertions, (ii) the neutral or minimal effect of the remaining insertions on gene transcription, and (iii) the continued mobility of mPingelements in strains that already have > 1,000 copies. The rapid increase in mPing copy number documented in this study represents a potentially valuable source of population diversity in self-fertilizing plants like rice.
journal_name
Proc Natl Acad Sci U S Aauthors
Naito K,Cho E,Yang G,Campbell MA,Yano K,Okumoto Y,Tanisaka T,Wessler SRdoi
10.1073/pnas.0605421103subject
Has Abstractpub_date
2006-11-21 00:00:00pages
17620-5issue
47eissn
0027-8424issn
1091-6490pii
0605421103journal_volume
103pub_type
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