Single-molecule detection of structural changes during Per-Arnt-Sim (PAS) domain activation.

abstract：:Here we study the effects of many-body interactions on rate and mechanism in protein folding by using the results of molecular dynamics simulations on numerous coarse-grained Calpha-model single-domain proteins. After adding three-body interactions explicitly as a perturbation to a Gō-like Hamiltonian with native pair...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ejtehadi MR,Avall SP,Plotkin SS

更新日期：2004-10-19 00:00:00

abstract：:A detailed model for the structure and dynamics of the interior of the lipid bilayer in the liquid crystal phase is presented. The model includes two classes of motion: (i) the internal dynamics of the chains, determined from Brownian dynamics simulations with a continuous version of the Marcelja mean-field potential,...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Pastor RW,Venable RM,Karplus M

更新日期：1991-02-01 00:00:00

abstract：:The evolution of development has been studied through the lens of gene regulation by examining either closely related species or extremely distant animals of different phyla. In nematodes, detailed cell- and stage-specific expression analyses are focused on the model Caenorhabditis elegans, in part leading to the view...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Schiffer PH,Polsky AL,Cole AG,Camps JIR,Kroiher M,Silver DH,Grishkevich V,Anavy L,Koutsovoulos G,Hashimshony T,Yanai I

更新日期：2018-04-24 00:00:00

abstract：:The light-entrained master central circadian clock (CC) located in the suprachiasmatic nucleus (SCN) not only controls the diurnal alternance of the active phase (the light period of the human light-dark cycle, but the mouse dark period) and the rest phase (the human dark period, but the mouse light period), but also ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Mukherji A,Kobiita A,Damara M,Misra N,Meziane H,Champy MF,Chambon P

更新日期：2015-12-01 00:00:00

abstract：:Numerous investigations have focused on DNA damage induced by ionizing radiation; however, photoionization threshold energies of nucleic acid components in aqueous solution are not known. Herein, data from gas-phase photoelectron experiments have been combined with results from self-consistent field and post-self-cons...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Fernando H,Papadantonakis GA,Kim NS,LeBreton PR

更新日期：1998-05-12 00:00:00

abstract：:Cell fate determination depends in part on the establishment of specific transcriptional programs of gene expression. These programs result from the interpretation of the genomic cis-regulatory information by sequence-specific factors. Decoding this information in sequenced genomes is an important issue. Here, we deve...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Rouault H,Mazouni K,Couturier L,Hakim V,Schweisguth F

更新日期：2010-08-17 00:00:00

abstract：:Alzheimer's disease is a neurodegenerative disorder characterized by the accumulation of amyloid plaques in the brain. This amyloid primarily contains amyloid-beta (Abeta), a 39- to 43-aa peptide derived from the proteolytic cleavage of the endogenous amyloid precursor protein. The 42-residue-length Abeta peptide (Abe...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Zhang R,Hu X,Khant H,Ludtke SJ,Chiu W,Schmid MF,Frieden C,Lee JM

更新日期：2009-03-24 00:00:00

abstract：:The stress inoculation hypothesis presupposes that brief intermittent stress exposure early in life induces the development of subsequent stress resistance in human and nonhuman primates. Rodent studies, however, suggest a role for maternal care rather than stress exposure per se (i.e., the maternal mediation hypothes...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Parker KJ,Buckmaster CL,Sundlass K,Schatzberg AF,Lyons DM

更新日期：2006-02-21 00:00:00

abstract：:In classical evolutionary theory, traits evolve because they facilitate organismal survival and/or reproduction. We discuss a different type of evolutionary mechanism that relies upon differential dispersal. Traits that enhance rates of dispersal inevitably accumulate at expanding range edges, and assortative mating b...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Shine R,Brown GP,Phillips BL

更新日期：2011-04-05 00:00:00

abstract：:An elegant expression is obtained for the product of the inverse Weierstrass-Laguerre transforms of two functions in terms of their convolution. It is also shown how the main result can be extended to hold for the product of the inverse Weierstrass-Laguerre transforms of several functions. ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Srivastava HM

更新日期：1971-03-01 00:00:00

abstract：:The inducible nitric oxide synthase (iNOS) contains an amino-terminal oxygenase domain, a carboxy-terminal reductase domain, and an intervening calmodulin-binding region. For the synthesis of nitric oxide (NO), iNOS is active as a homodimer. The human iNOS mRNA is subject to alternative splicing, including deletion of...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Eissa NT,Yuan JW,Haggerty CM,Choo EK,Palmer CD,Moss J

更新日期：1998-06-23 00:00:00

abstract：:Parasitic plants share a common anatomical feature, the haustorium. Haustoria enable both infection and nutrient transfer, which often leads to growth penalties for host plants and yield reduction in crop species. Haustoria also reciprocally transfer substances, such as RNA and proteins, from parasite to host, but the...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Spallek T,Melnyk CW,Wakatake T,Zhang J,Sakamoto Y,Kiba T,Yoshida S,Matsunaga S,Sakakibara H,Shirasu K

更新日期：2017-05-16 00:00:00

abstract：:Previous experiments have demonstrated that the human beta-globin gene is correctly regulated in transgenic mice. The beta-globin gene is not expressed in yolk sac-derived erythroid cells in early embryonic development but is expressed concomitantly with the adult mouse beta-globin genes in 14- to 16-day fetal liver a...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Behringer RR,Hammer RE,Brinster RL,Palmiter RD,Townes TM

更新日期：1987-10-01 00:00:00

abstract：:More than a thousand proteins are thought to contribute to mammalian chromatin and its regulation, but our understanding of the genomic occupancy and function of most of these proteins is limited. Here we describe an approach, which we call "chromatin proteomic profiling," to identify proteins associated with genomic ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ji X,Dadon DB,Abraham BJ,Lee TI,Jaenisch R,Bradner JE,Young RA

更新日期：2015-03-24 00:00:00

abstract：:Deregulation of microRNA (miRNA) expression can lead to cancer initiation and progression. However, limited information exists on the function of miRNAs in cancer maintenance. We examined these issues in the case of myeloproliferative diseases and neoplasms (MPN), a collection of hematopoietic neoplasms regarded as pr...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Guo S,Bai H,Megyola CM,Halene S,Krause DS,Scadden DT,Lu J

更新日期：2012-10-09 00:00:00

abstract：:Glycan-protein interactions are emerging as important modulators of membrane protein organization and dynamics, regulating multiple cellular functions. In particular, it has been postulated that glycan-mediated interactions regulate surface residence time of glycoproteins and endocytosis. How this precisely occurs is ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Torreno-Pina JA,Castro BM,Manzo C,Buschow SI,Cambi A,Garcia-Parajo MF

更新日期：2014-07-29 00:00:00

abstract：:Signal peptides of membrane proteins are cleaved by endoplasmic reticulum-resident signal peptidase, and thus, are not present on mature membrane proteins. Here, we report that, contrary to the paradigm, the signal peptide of ruminant CD18, the beta-subunit of beta(2)-integrins, is not cleaved. Intriguingly, the intac...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Shanthalingam S,Srikumaran S

更新日期：2009-09-08 00:00:00

abstract：:To scrutinize how a protein folds at atomic resolution, we performed 200 molecular dynamics simulations (each of 50 ns) of the miniprotein Trp-cage on the computational grid. Within the trajectories, 58 folding and 31 unfolding events were identified and subjected to extensive comparison and classification. Based on a...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ota M,Ikeguchi M,Kidera A

更新日期：2004-12-21 00:00:00

abstract：:The phosphodiester bond formation by DNA-dependent RNA-polymerase (RNA nucleotidyltransferase, nucleosidetriphosphate:RNA nucleotidyltransferase, EC 2.7.7.6) can in principle result in retention, inversion, or racemization of configuration at the alpha-phosphorus of the nucleoside 5'-triphosphate being polymerized. As...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Eckstein F,Armstrong VW,Sternbach H

更新日期：1976-09-01 00:00:00

abstract：:This study presents, to our knowledge, the first on-line measurement of acetylcholinesterase (AcChoEase) release from brain tissue. It is now well established that a soluble form of the enzyme is released from central nervous system neurons, and it has been proposed on indirect grounds that such release may occur not ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Llinás RR,Greenfield SA

更新日期：1987-05-01 00:00:00

abstract：:We have previously shown that in neutrophils deprived of granulocyte colony-stimulating factor, apoptosis is preceded by acidification and that the protection against apoptosis conferred on neutrophils by granulocyte colony-stimulating factor is dependent upon delay of this acidification. To test the hypothesis that a...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gottlieb RA,Nordberg J,Skowronski E,Babior BM

更新日期：1996-01-23 00:00:00

abstract：:Metalloproteases (MPs) are a large and diverse class of enzymes implicated in numerous physiological and pathological processes, including tissue remodeling, peptide hormone processing, and cancer. MPs are tightly regulated by multiple posttranslational mechanisms in vivo, hindering their functional analysis by conven...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Saghatelian A,Jessani N,Joseph A,Humphrey M,Cravatt BF

更新日期：2004-07-06 00:00:00

abstract：:Cathepsin B (CTSB) is overexpressed in tumors of the lung, prostate, colon, breast, and stomach. However, evidence of primary genomic alterations in the CTSB gene during tumor initiation or progression has been lacking. We have found a novel amplicon at 8p22-23 that results in CTSB overexpression in esophageal adenoca...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Hughes SJ,Glover TW,Zhu XX,Kuick R,Thoraval D,Orringer MB,Beer DG,Hanash S

更新日期：1998-10-13 00:00:00

abstract：:DNA in the macronuclei of Oxytricha fallax, as in other hypotrichous ciliate protozoa, exists as small, achromosomal molecules rather than in chromosomes. We report studies on O. fallax DNA using physicochemical procedures and nucleic acid hybridization. Macronuclear DNA molecules range in size from 22 kilobase pairs ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Rae PM,Spear BB

更新日期：1978-10-01 00:00:00

abstract：:To define the gene content of the HLA class I region, cDNA selection was applied to three overlapping yeast artificial chromosomes (YACs) that spanned 1 megabase (Mb) of this region of the human major histocompatibility complex. These YACs extended from the region centromeric to HLA-E to the region telomeric to HLA-F....

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Wei H,Fan WF,Xu H,Parimoo S,Shukla H,Chaplin DD,Weissman SM

更新日期：1993-12-15 00:00:00

abstract：:We utilized the presence of hepatic receptors for galactose-terminal glycoproteins to achieve specific rescue of differentiated hepatocytes from methotrexate toxicity. This was accomplished by administration of a conjugate formed by covalent coupling of the methotrexate antagonist, folinic acid (leucovorin), to galact...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Wu GY,Wu CH,Stockert RJ

更新日期：1983-05-01 00:00:00

abstract：:Surface Ig (sIg) of follicular lymphoma (FL) is vital for tumor cell survival. We found previously that the Ig in FL is unusual, because the variable region genes carry sequence motifs for N-glycan addition. These are introduced by somatic mutation and are tumor specific. Unexpectedly, added glycans terminate at high ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Coelho V,Krysov S,Ghaemmaghami AM,Emara M,Potter KN,Johnson P,Packham G,Martinez-Pomares L,Stevenson FK

更新日期：2010-10-26 00:00:00

abstract：:Phonoangiography, the quantitative analysis of sounds produced by blood flow, has been used to investigate local fluid motion in arteries narrowed by atherosclerosis. The sound spectra measured in vivo were found to be identical to those obtained in laboratory investigations of turbulent pipe flow. A theoretical model...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Lees RS,Dewey CF Jr

更新日期：1970-10-01 00:00:00

abstract：:Understanding the mechanism of action of compounds capable of inhibiting amyloid-fibril formation is critical to the development of potential therapeutics against protein-misfolding diseases. A fundamental challenge for progress is the range of possible target species and the disparate timescales involved, since the a...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Michaels TCT,Šarić A,Meisl G,Heller GT,Curk S,Arosio P,Linse S,Dobson CM,Vendruscolo M,Knowles TPJ

更新日期：2020-09-29 00:00:00

abstract：:The gene V protein of bacteriophage f1 is a single-stranded DNA and RNA-binding protein composed of two identical subunits. We have constructed single-chain variants of the protein using short peptide linkers of five or six amino acids to connect the carboxyl terminus of one monomer to the amino terminus of the second...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Liang H,Sandberg WS,Terwilliger TC

更新日期：1993-08-01 00:00:00