The changing face of glucagon fibrillation: structural polymorphism and conformational imprinting.

Abstract:

:We have established a time-resolved fluorescence assay to study fibrillation of the 29 residue peptide hormone glucagon under a variety of different conditions in a high-throughput format. Fibrils formed at pH 2.5 differ in fibrillation kinetics, morphology, thioflavin T staining and FTIR/CD spectra depending on salts, glucagon concentration and fibrillation temperature. Apparent fibrillar stability correlates with spectral and kinetic properties; generally, fibrils formed under conditions favourable for rapid fibrillation (ambient temperatures, high glucagon concentration or high salt concentration) appear less thermostable than those formed under more challenging conditions (high temperatures, low glucagon or low salt concentrations). Properties of preformed fibrils used for seeding are inherited in a prion-like manner. Thus, we conclude that the structure of fibrils formed by glucagon is not the result of the global energy minimization, but rather kinetically controlled by solvent conditions and seed-imprinting. Fibrillar polymorphism, which is being reported for an increasing number of proteins, probably reflects that fibrils have not been under evolutionary constraints to retain a single active conformation. Our results highlight the complexity of the fibrillation mechanism of glucagon, since even subtle changes in fibrillation conditions can alter the type of fibrils formed, or result in formation of mixtures of several types of fibrils.

journal_name

J Mol Biol

authors

Pedersen JS,Dikov D,Flink JL,Hjuler HA,Christiansen G,Otzen DE

doi

10.1016/j.jmb.2005.09.100

keywords:

subject

Has Abstract

pub_date

2006-01-20 00:00:00

pages

501-23

issue

3

eissn

0022-2836

issn

1089-8638

pii

S0022-2836(05)01297-0

journal_volume

355

pub_type

杂志文章
  • Structure determination of the glutamate dehydrogenase from the hyperthermophile Thermococcus litoralis and its comparison with that from Pyrococcus furiosus.

    abstract::Glutamate dehydrogenase catalyses the oxidative deamination of glutamate to 2-oxoglutarate with concomitant reduction of NAD(P)(+), and has been shown to be widely distributed in nature across species ranging from psychrophiles to hyperthermophiles. Extensive characterisation of this enzyme isolated from hyperthermoph...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1999.3205

    authors: Britton KL,Yip KS,Sedelnikova SE,Stillman TJ,Adams MW,Ma K,Maeder DL,Robb FT,Tolliday N,Vetriani C,Rice DW,Baker PJ

    更新日期:1999-11-12 00:00:00

  • Characterization of the structure and the amyloidogenic properties of the Josephin domain of the polyglutamine-containing protein ataxin-3.

    abstract::Expansion of the polyglutamine (polyQ) region in the protein ataxin-3 is associated with spinocerebellar ataxia type 3, an inherited neurodegenerative disorder that belongs to the family of polyQ diseases. Increasing evidence indicates that protein aggregation and fibre formation play an important role in these pathol...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2004.09.065

    authors: Masino L,Nicastro G,Menon RP,Dal Piaz F,Calder L,Pastore A

    更新日期:2004-12-03 00:00:00

  • Crystal structure of the 2-oxoglutarate- and Fe(II)-dependent lysyl hydroxylase JMJD6.

    abstract::Lysyl and prolyl hydroxylations are well-known post-translational modifications to animal and plant proteins with extracellular roles. More recent work has indicated that the hydroxylation of intracellular animal proteins may be common. JMJD6 catalyses the iron- and 2-oxoglutarate-dependent hydroxylation of lysyl resi...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:

    authors: Mantri M,Krojer T,Bagg EA,Webby CJ,Butler DS,Kochan G,Kavanagh KL,Oppermann U,McDonough MA,Schofield CJ

    更新日期:2010-08-13 00:00:00

  • Crystallization of porcine liver ribonuclease inhibitor a member of the family of proteins containing leucine-rich repeats.

    abstract::Single crystals of the RNase inhibitor from porcine liver have been obtained from 30 to 34% saturated ammonium sulphate solutions at pH 6.0 to 7.2, containing 20 mM dithiothreitol, at room temperature over a period of two to three weeks. Because the inhibitor contains 30 1/2-cystinyl residues, all of which occur in th...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1993.1299

    authors: Neumann U,Hofsteenge J,Arkema AH,Dijkstra BW

    更新日期:1993-05-20 00:00:00

  • Elucidation of the active conformation of the APS-kinase domain of human PAPS synthetase 1.

    abstract::Bifunctional human PAPS synthetase (PAPSS) catalyzes, in a two-step process, the formation of the activated sulfate carrier 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The first reaction involves the formation of the 5'-adenosine phosphosulfate (APS) intermediate from ATP and inorganic sulfate. APS is then further p...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.01.025

    authors: Sekulic N,Dietrich K,Paarmann I,Ort S,Konrad M,Lavie A

    更新日期:2007-03-23 00:00:00

  • Ordered multi-site phosphorylation of the splicing factor ASF/SF2 by SRPK1.

    abstract::The human alternative splicing factor ASF/SF2, an SR (serine-arginine-rich) protein involved in mRNA splicing control, is activated by the multisite phosphorylation of its C-terminal RS domain, a segment containing numerous arginine-serine dipeptide repeats. The protein kinase responsible for this modification, SR-spe...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.08.029

    authors: Ma CT,Velazquez-Dones A,Hagopian JC,Ghosh G,Fu XD,Adams JA

    更新日期:2008-02-08 00:00:00

  • Celastrol inhibits Tat-mediated human immunodeficiency virus (HIV) transcription and replication.

    abstract::Current drugs used for antiretroviral therapy against human immunodeficiency virus (HIV) have a narrow spectrum of activity and, more often, have associated toxicities and severe side effects in addition to developing resistance. Thus, there is a need to develop new therapeutic strategies against HIV/AIDS to complemen...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2011.04.013

    authors: Narayan V,Ravindra KC,Chiaro C,Cary D,Aggarwal BB,Henderson AJ,Prabhu KS

    更新日期:2011-07-29 00:00:00

  • Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli.

    abstract::Mechanisms of folding and misfolding of membrane proteins are of interest in cell biology. Recently, we have established single-molecule force spectroscopy to observe directly the stepwise folding of the Na+/H+ antiporter NhaA from Escherichia coli in vitro. Here, we improved this approach significantly to track the f...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2005.10.028

    authors: Kedrov A,Janovjak H,Ziegler C,Kuhlbrandt W,Muller DJ

    更新日期:2006-01-06 00:00:00

  • Cadherin superfamily proteins in Caenorhabditis elegans and Drosophila melanogaster.

    abstract::The ability to form selective cell-cell adhesions is an essential property of metazoan cells. Members of the cadherin superfamily are important regulators of this process in both vertebrates and invertebrates. With the advent of genome sequencing projects, determination of the full repertoire of cadherins available to...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2000.4361

    authors: Hill E,Broadbent ID,Chothia C,Pettitt J

    更新日期:2001-02-02 00:00:00

  • APOBEC3B and AID have similar nuclear import mechanisms.

    abstract::Members of the APOBEC (apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like) protein family catalyze DNA cytosine deamination and underpin a variety of immune defenses. For instance, several family members, including APOBEC3B (A3B), elicit strong retrotransposon and retrovirus restriction activities. Howev...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2012.03.011

    authors: Lackey L,Demorest ZL,Land AM,Hultquist JF,Brown WL,Harris RS

    更新日期:2012-06-22 00:00:00

  • Characterization of the Borrelia burgdorferi RNase P RNA gene reveals a novel tertiary interaction.

    abstract::Characterization of the RNase P RNA gene derived from Borrelia burgdorferi reveals covariation of the conserved nucleotides at positions corresponding to nucleotides 128 and 230 in Escherichia coli RNase P RNA (M1 RNA). Single base substitutions at either of these positions in M1 RNA resulted in a lack of complementat...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1994.1467

    authors: Mattsson JG,Svärd SG,Kirsebom LA

    更新日期:1994-08-05 00:00:00

  • Sequence Specificity in the Entropy-Driven Binding of a Small Molecule and a Disordered Peptide.

    abstract::Approximately one-third of the human proteome is made up of proteins that are entirely disordered or that contain extended disordered regions. Although these disordered proteins are closely linked with many major diseases, their binding mechanisms with small molecules remain poorly understood, and a major concern is w...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2017.07.016

    authors: Heller GT,Aprile FA,Bonomi M,Camilloni C,De Simone A,Vendruscolo M

    更新日期:2017-09-01 00:00:00

  • Dissecting the Conformational Dynamics of the Bile Acid Transporter Homologue ASBTNM.

    abstract::Apical sodium-dependent bile acid transporter (ASBT) catalyses uphill transport of bile acids using the electrochemical gradient of Na+ as the driving force. The crystal structures of two bacterial homologues ASBTNM and ASBTYf have previously been determined, with the former showing an inward-facing conformation, and ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2020.166764

    authors: Lu PH,Li CC,Chiang YW,Liu JH,Chiang WT,Chao YH,Li GS,Weng SE,Lin SY,Hu NJ

    更新日期:2021-01-13 00:00:00

  • Conformational transitions in peptides containing two putative alpha-helices of the prion protein.

    abstract::Prions are composed largely, if not entirely, of the scrapie isoform of the prion protein (PrPSc). Conversion of the cellular isoform (PrPC) to PrPSc is accompanied by a diminution in the alpha-helical content and an increase in the beta-sheet structure. To investigate the structural basis of this transition, peptide ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1995.0395

    authors: Zhang H,Kaneko K,Nguyen JT,Livshits TL,Baldwin MA,Cohen FE,James TL,Prusiner SB

    更新日期:1995-07-21 00:00:00

  • Yeast a1 and alpha 2 homeodomain proteins form a DNA-binding activity with properties distinct from those of either protein.

    abstract::The yeast a1 and alpha 2 proteins are examples of homeodomain proteins that display cell-type-specific expression. They are co-expressed in only one type of cell, the a/alpha cell, where they repress the expression of a group of target genes. Using purified proteins, we demonstrate that a1 and alpha 2 form a highly sp...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1993.1517

    authors: Goutte C,Johnson AD

    更新日期:1993-10-05 00:00:00

  • Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundles.

    abstract::Spectrin repeats fold into triple helical coiled-coils comprising approximately 106 amino acid residues. Using an AFM-related technique we measured the force required to mechanically unfold these repeats to be 25 to 35 pN. Under tension, individual spectrin repeats unfold independently and in an all-or-none process. T...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1998.2466

    authors: Rief M,Pascual J,Saraste M,Gaub HE

    更新日期:1999-02-19 00:00:00

  • Probing the assembly of the 3' major domain of 16 S rRNA. Interactions involving ribosomal proteins S2, S3, S10, S13 and S14.

    abstract::We have used rapid probing methods to follow the changes in reactivity of residues in 16 S rRNA to chemical and enzymatic probes as ribosomal proteins S2, S3, S10, S13 and S14 are assembled into 30 S subunits. Effects observed are confined to the 3' major domain of the RNA and comprise three general classes. (1) Monos...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(88)90468-8

    authors: Powers T,Stern S,Changchien LM,Noller HF

    更新日期:1988-06-20 00:00:00

  • Conserved patterns in the Cu,Zn superoxide dismutase family.

    abstract::Conserved structural and functional features of Cu,Zn superoxide dismutase enzymes have been studied by comparison of known three-dimensional structures and analysis of the currently available amino acid sequences. For this purpose, the three-dimensional structures of the bovine, spinach and yeast enzymes have been su...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1994.1298

    authors: Bordo D,Djinović K,Bolognesi M

    更新日期:1994-05-06 00:00:00

  • Functional significance of arginine 15 in the active site of human class alpha glutathione transferase A1-1.

    abstract::Arg15 is a conserved active-site residue in class Alpha glutathione transferases. X-ray diffraction studies of human glutathione transferase A1-1 have shown that N epsilon of this amino acid residue is adjacent to the sulfur atom of a glutathione derivative bound to the active site, suggesting the presence of a hydrog...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(05)80154-8

    authors: Björnestedt R,Stenberg G,Widersten M,Board PG,Sinning I,Jones TA,Mannervik B

    更新日期:1995-04-07 00:00:00

  • DNA polymerase X from African swine fever virus: quantitative analysis of the enzyme-ssDNA interactions and the functional structure of the complex.

    abstract::Interactions of polymerase X from African swine fever virus with single-stranded DNA (ssDNA) have been studied, using quantitative fluorescence titration and analytical ultracentrifugation techniques. Experiments were performed with a fluorescent etheno-derivative of ssDNA oligomers. Studies of unmodified ssDNA oligom...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2005.10.061

    authors: Jezewska MJ,Marcinowicz A,Lucius AL,Bujalowski W

    更新日期:2006-02-10 00:00:00

  • The Developmental Switch in Bacteriophage λ: A Critical Role of the Cro Protein.

    abstract::Bacteriophage λ of Escherichia coli has two alternative life cycles after infection-host survival with lysogen formation, or host lysis and phage production. In a lysogen, CI represses the two lytic promoters, pR and pL, and activates its own transcription from the auto-regulated pRM promoter. During induction from th...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2017.11.005

    authors: Lee S,Lewis DEA,Adhya S

    更新日期:2018-01-05 00:00:00

  • NMR structures of two variants of bovine pancreatic trypsin inhibitor (BPTI) reveal unexpected influence of mutations on protein structure and stability.

    abstract::Here we determined NMR solution structures of two mutants of bovine pancreatic trypsin inhibitor (BPTI) to reveal structural reasons of their decreased thermodynamic stability. A point mutation, A16V, in the solvent-exposed loop destabilizes the protein by 20 degrees C, in contrast to marginal destabilization observed...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(02)00620-4

    authors: Cierpicki T,Otlewski J

    更新日期:2002-08-23 00:00:00

  • Preliminary crystallographic analysis of bovine enterovirus.

    abstract::Bovine enterovirus (BEV) strain VG-5-27 derived from an infectious cDNA clone has been crystallized as extended hexagonal plates. Virus recovered from crystals produced cytopathic effect in BHK cells. These crystals diffract X-rays from high energy synchrotron sources to beyond 2.7 A. The crystal system is monoclinic,...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1993.1339

    authors: Smyth M,Fry E,Stuart D,Lyons C,Hoey E,Martin SJ

    更新日期:1993-06-05 00:00:00

  • Conformational properties of aggregated polypeptides determine ClpB-dependence in the disaggregation process.

    abstract::Severe thermal stress induces massive intracellular protein aggregation. The concerted action of Hsp70 (DnaK, DnaJ, GrpE) and Hsp100 (ClpB) chaperones results in solubilization of aggregates followed by reactivation of proteins. It was shown that the Hsp70 chaperone system works at the initial step of the disaggregati...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.05.057

    authors: Lewandowska A,Matuszewska M,Liberek K

    更新日期:2007-08-17 00:00:00

  • Crystal structure of human ribosomal protein L10 core domain reveals eukaryote-specific motifs in addition to the conserved fold.

    abstract::A phylogenetically conserved ribosomal protein L16p/L10e organizes the architecture of the aminoacyl tRNA binding site on the large ribosomal subunit. Eukaryotic L10 also exhibits a variety of cellular activities, and, in particular, human L10 is known as a putative tumor suppressor, QM. We have determined the 2.5-A c...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2008.01.003

    authors: Nishimura M,Kaminishi T,Takemoto C,Kawazoe M,Yoshida T,Tanaka A,Sugano S,Shirouzu M,Ohkubo T,Yokoyama S,Kobayashi Y

    更新日期:2008-03-21 00:00:00

  • Crystallization and preliminary X-ray diffraction studies of recombinant human interleukin-5.

    abstract::Recombinant human interleukin-5 (rhIL-5) has been crystallized by the hanging drop vapor diffusion method using 0.1 M-Tris.HCl buffer (pH 8.5) containing 0.2 to 0.25 M-sodium acetate and 26 to 30% PEG 4000 at 22 degrees C. The parallel-piped crystals belong to the space group C2 with unit cell dimensions of a = 122.1 ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1993.1110

    authors: Hassell AM,Wells TN,Graber P,Proudfoot AE,Anderegg RJ,Burkhart W,Jordan SR,Milburn MV

    更新日期:1993-02-20 00:00:00

  • Analysis of gene duplication repeats in the myosin rod.

    abstract::The helical coiled-coil region of the myosin rod in the nematode Caenorhabditis elegans is a repetitive sequence 1094 amino acids long which contains 39 repeats of a 28-residue pattern. The repeats are extremely significant when compared with the statistical distributions expected, first for random sequences, and then...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(83)80173-9

    authors: McLachlan AD

    更新日期:1983-09-05 00:00:00

  • The external alternative NAD(P)H dehydrogenase NDE3 is localized both in the mitochondria and in the cytoplasm of Neurospora crassa.

    abstract::The filamentous fungus Neurospora crassa has a branched respiratory chain. Several alternative dehydrogenases, aside from the canonical complex I enzyme, are involved in the oxidation of NAD(P)H substrates. Based on homology searches in the fungal genome, we have tentatively identified one of these proteins. The corre...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.02.080

    authors: Carneiro P,Duarte M,Videira A

    更新日期:2007-05-11 00:00:00

  • Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs.

    abstract::X-ray, phylogenetic and quantum chemical analysis of molecular interactions and conservation patterns of cis Watson-Crick (W.C.) A/G base-pairs in 16S rRNA, 23S rRNA and other molecules was carried out. In these base-pairs, the A and G nucleotides interact with their W.C. edges with glycosidic bonds oriented cis relat...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(03)00667-3

    authors: Sponer J,Mokdad A,Sponer JE,Spacková N,Leszczynski J,Leontis NB

    更新日期:2003-07-25 00:00:00

  • Comparison of the human apolipoprotein genes. Apo AII presents a unique functional intron-exon junction.

    abstract::The structure and function of the apolipoproteins are of interest because of their central role in lipid metabolism. We report the complete primary structure of the human apo AII and CIII genes. These, like apo AI, contain three introns located at conserved positions. This may reflect their evolutionary and functional...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(85)90255-4

    authors: Shelley CS,Sharpe CR,Baralle FE,Shoulders CC

    更新日期:1985-11-05 00:00:00