The EDNAP mitochondrial DNA population database (EMPOP) collaborative exercises: organisation, results and perspectives.

Abstract:

:This paper presents an overview of the organisation and the results of the collaborative exercises (CE) of the European DNA Profiling (EDNAP) Group's mitochondrial DNA population database project (EMPOP). The aim of the collaborative exercises was to determine whether uniformity of mtDNA sequencing results could be achieved among different laboratories. These were asked to sequence either the complete mtDNA control region or the two hypervariable regions HVI (16024-16365) and HVII (73-340) from DNA extracts, buccal swabs or bloodstains, proceeding in accordance with the protocol and strategies used in each individual laboratory. The results of the collaborative exercises were employed to identify possible sources of errors that could arise during the analysis and interpretation of mtDNA profiles. These findings were taken as a basis to tentatively make suitable arrangements for the construction of a high quality mtDNA database. One hundred fifty mtDNA profiles were submitted to the evaluating laboratory, and disaccording profiles were classified into four groups corresponding to the source of error: clerical errors, sample mix-ups, contaminations and discrepancies with respect to the mtDNA nomenclature. Overall, 14 disaccording haplotypes (16 individual errors) were observed. The errors included 10 clerical errors, 3 interpretation problems, 2 cases of sample mix-up and 1 case of point heteroplasmic mixture, where the 2 sequencing reactions brought inconsistent base calls. This corresponds to an error rate of 10.7% in a virtual mtDNA database consisting of the collaborative exercise results. However, this estimate is still conservative compared to conclusions drawn by authors of meanwhile numerous publications critically reviewing published mtDNA population databases. Our results and earlier published concerns strongly emphasize the need for appropriate safety regulations when mtDNA profiles are compiled for database purposes in order to accomplish the high standard required for mtDNA databases that are used in the forensic context.

journal_name

Forensic Sci Int

authors

Parson W,Brandstätter A,Alonso A,Brandt N,Brinkmann B,Carracedo A,Corach D,Froment O,Furac I,Grzybowski T,Hedberg K,Keyser-Tracqui C,Kupiec T,Lutz-Bonengel S,Mevag B,Ploski R,Schmitter H,Schneider P,Syndercombe-Court

doi

10.1016/j.forsciint.2003.11.008

keywords:

subject

Has Abstract

pub_date

2004-01-28 00:00:00

pages

215-26

issue

2-3

eissn

0379-0738

issn

1872-6283

pii

S0379073803004936

journal_volume

139

pub_type

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