Erythrobacter citreus sp. nov., a yellow-pigmented bacterium that lacks bacteriochlorophyll a, isolated from the western Mediterranean Sea.

Abstract:

:Two facultatively oligotrophic, intensely yellow-pigmented bacterial strains, RE35F/1T and RE10F/45, have been previously isolated from the western Mediterranean Sea (Bay of Calvi, Corsica, France) by 0.2 microm membrane filtration. The organisms were gram-negative, catalase- and oxidase-positive, strictly aerobic, rod-shaped and non-motile. Their respiratory lipoquinone profiles consisted exclusively of ubiquinone-10 (Q-10) and the G+C contents of their DNAs were 62.0 and 62.4 mol%, respectively. Among the cellular fatty acids, octadecenoic acid (18:1omega7c) was the major component. Both isolates also contained hydroxy fatty acids (14:0 2-OH, 18:1 2-OH and 16:0 iso 3-OH) and branched fatty acids (15:0 anteiso, 16:0 anteiso and 17:0 anteiso). Polar lipid fingerprints were characterized by the presence of a sphingoglycolipid. Comparative analyses of their 16S rRNA gene sequences indicated that both isolates were phylogenetically closely related (sequence similarity of 99.9%) and formed a coherent cluster with aerobic bacteriochlorophyll a-containing species of the Erythrobacter/Porphyrobacter/Erythromicrobium cluster within the family Sphingomonadaceae. The closest relative was Erythrobacter litoralis DSM 8509T (97.4 and 97.5% 16S rRNA gene sequence similarity between this strain and RE35F/1T and RE10F/45, respectively). DNA-DNA reassociation studies confirmed that strains RE35F/1T and RE10F/45 represent a single species (79.6% DNA homology), but also demonstrated that they do not belong to the species Erythrobacter litoralis (25.2 and 34.2% DNA homology, respectively). Notably, both RE35F/1T and RE10F/45 lacked bacteriochlorophyll a. Based upon phenotypic and molecular evidence, a novel species of the genus Erythrobacter, Erythrobacter citreus sp. nov., is proposed. Strain RE35F/1T (= CIP 107092T = DSM 14432T) is the type strain.

authors

Denner EBM,Vybiral D,Koblízek M,Kämpfer P,Busse HJ,Velimirov B

doi

10.1099/00207713-52-5-1655

keywords:

subject

Has Abstract

pub_date

2002-09-01 00:00:00

pages

1655-1661

issue

Pt 5

eissn

1466-5026

issn

1466-5034

journal_volume

52

pub_type

杂志文章
  • Muriicola jejuensis gen. nov., sp. nov., isolated from seawater.

    abstract::An aerobic, yellow-orange-pigmented, Gram-staining-negative bacterium, designated strain EM44(T), was isolated from seawater on the eastern coast of Jeju Island, Korea. Growth was observed at 15-35 degrees C (optimum 25-30 degrees C), pH 6.5-9.0 (optimum pH 7.0-8.5) and between 1 and 5 % NaCl (w/v) (optimum 2-4 %). Ce...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.015313-0

    authors: Kahng HY,Lee SS,Kim JM,Jung JY,Lee MY,Park W,Jeon CO

    更新日期:2010-07-01 00:00:00

  • Candida cellulosicola sp. nov., a xylose-utilizing anamorphic yeast from rotten wood.

    abstract::Two xylose-utilizing yeast strains isolated from rotten wood collected in the rainforest in different mountains of Hainan province, southern China, were studied. Sequence analysis of the large subunit rDNA D1/D2 domain and internal transcribed spacer region revealed that the strains represent a novel anamorphic yeast ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.031351-0

    authors: Guo X,Zhu H,Bai FY

    更新日期:2012-01-01 00:00:00

  • Methylobacterium frigidaeris sp. nov., isolated from an air conditioning system.

    abstract::A reddish pink-pigmented, Gram-stain-negative, aerobic and methylotrophic bacterial strain, designated strain IER25-16T, was isolated from a laboratory air conditioning system in the Republic of Korea. Cells were motile rods showing catalase- and oxidase-positive reactions. Strain IER25-16T grew at 10-40 °C (optimum, ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002500

    authors: Lee Y,Jeon CO

    更新日期:2018-01-01 00:00:00

  • Marinitoga okinawensis sp. nov., a novel thermophilic and anaerobic heterotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough.

    abstract::A novel thermophilic and sulfur-reducing heterotrophic bacterium, strain TFS10-5(T), was isolated from a deep-sea hydrothermal field in Yonaguni Knoll IV, Southern Okinawa Trough. Cells of strain TFS10-5(T) were motile rods, 1.5-5 microm in length and 0.5-0.8 microm in width. Strain TFS10-5(T) was an obligately anaero...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64640-0

    authors: Nunoura T,Oida H,Miyazaki M,Suzuki Y,Takai K,Horikoshi K

    更新日期:2007-03-01 00:00:00

  • Parvibaculum lavamentivorans gen. nov., sp. nov., a novel heterotroph that initiates catabolism of linear alkylbenzenesulfonate.

    abstract::Strain DS-1T is a small (0.8 microm in length and 0.2 microm in diameter) heterotrophic bacterium able to omega-oxygenate the commercial surfactant linear alkylbenzenesulfonate (LAS) and shorten the side chain by beta-oxidation to yield sulfophenylcarboxylates. The morphotype is widespread in cultures able to utilize ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.03020-0

    authors: Schleheck D,Tindall BJ,Rosselló-Mora R,Cook AM

    更新日期:2004-09-01 00:00:00

  • Clostridium hiranonis sp. nov., a human intestinal bacterium with bile acid 7alpha-dehydroxylating activity.

    abstract::The Clostridium-like organisms TO-931T and HD-17, isolated from human faeces, have high levels of bile acid 7alpha-dehydroxylating activity. Sequencing of their 16S rDNA demonstrated that they belong to cluster XI of the genus Clostridium and that they represent a new and distinct line of descent. Clostridium bifermen...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-1-39

    authors: Kitahara M,Takamine F,Imamura T,Benno Y

    更新日期:2001-01-01 00:00:00

  • Phylogenetic analysis of the genera Streptomyces and Kitasatospora based on partial RNA polymerase beta-subunit gene (rpoB) sequences.

    abstract::The RNA polymerase beta-subunit genes (rpoB) of 67 Streptomyces strains, representing 57 species, five Kitasatospora strains and Micromonospora echinospora KCTC 9549 were partially sequenced using a pair of rpoB PCR primers. Among the streptomycetes, 99.7-100 % similarity within the same species and 90.2-99.3 % simila...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02941-0

    authors: Kim BJ,Kim CJ,Chun J,Koh YH,Lee SH,Hyun JW,Cha CY,Kook YH

    更新日期:2004-03-01 00:00:00

  • Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench.

    abstract::Two strains of obligately piezophilic bacteria were isolated from sediment collected from the bottom surface of a small canyon on the seaward slope of the Japan Trench at a depth of 6278 m. The isolated strains, Y223GT and Y251E, are closely affiliated with members of the genus Colwellia on the basis of 16S rRNA gene ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.03049-0

    authors: Nogi Y,Hosoya S,Kato C,Horikoshi K

    更新日期:2004-09-01 00:00:00

  • Actinomadura rhizosphaerae sp. nov., isolated from rhizosphere soil of the plant Azadirachta indica.

    abstract::A novel actinomycete, strain SDA37T, belonging to the genus Actinomadura, was isolated from rhizosphere soil collected from Udon Thani Province, Thailand. The taxonomic position of the strain was characterized using a polyphasic approach. Meso-diaminopimelic acid, glucose, ribose, galactose and madurose were detected ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002940

    authors: Malisorn K,Kanchanasin P,Phongsopitanun W,Tanasupawat S

    更新日期:2018-09-01 00:00:00

  • Oceanihabitans sediminis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the Yellow Sea.

    abstract::A Gram-stain-negative, rod-shaped bacterial strain, designated S9-10T, was isolated from a sediment sample from the Yellow Sea near China. Phylogenetic analysis of 16S rRNA gene sequences revealed that strain S9-10T was a member of the family Flavobacteriaceaeand formed a distinct lineage. The genomic DNA G+C content ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001208

    authors: Zhang DC,Liu YX,Huang HJ,Weber K,Margesin R

    更新日期:2016-09-01 00:00:00

  • Agromyces terreus sp. nov., isolated from soil.

    abstract::A Gram-positive, non-motile, cream-coloured, curved or straight rod-shaped bacterial strain, DS-10(T), was isolated from soil of Dokdo, Korea, and its taxonomic position was investigated by using a polyphasic approach. Strain DS-10(T) grew optimally at 25 degrees C and pH 7.0-8.0 in the presence of 0.5-1.0 % (w/v) NaC...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65072-0

    authors: Yoon JH,Schumann P,Kang SJ,Park S,Oh TK

    更新日期:2008-06-01 00:00:00

  • Actibacterium ureilyticum sp. nov., isolated from seawater.

    abstract::A polyphasic approach was used to characterize a novel marine bacterial strain, designated LS-811T, isolated from seawater of the South China Sea (Taiwan). Cells of strain LS-811Twere Gram-staining negative, aerobic and rod-shaped with polar flagella. The 16S rRNA gene sequence analysis of strain LS-811T showed highes...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001052

    authors: Lin SY,Young CC,Hameed A,Liu YC,Hsu YH,Chung WC,Young LS

    更新日期:2016-08-01 00:00:00

  • Terrimonas pekingensis sp. nov., isolated from bulking sludge, and emended descriptions of the genus Terrimonas, Terrimonas ferruginea, Terrimonas lutea and Terrimonas aquatica.

    abstract::A Gram-negative, strictly aerobic, non-motile and non-spore-forming rod that produced white, viscous colonies, designated QH(T), was isolated from bulking sludge collected from a municipal wastewater treatment plant in Beijing, China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain QH(T) belo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.036848-0

    authors: Jin D,Wang P,Bai Z,Jin B,Yu Z,Wang X,Zhuang G,Zhang H

    更新日期:2013-05-01 00:00:00

  • Characterization of Peptacetobacter hominis gen. nov., sp. nov., isolated from human faeces, and proposal for the reclassification of Clostridium hiranonis within the genus Peptacetobacter.

    abstract::A novel, Gram-stain-positive, rod-shaped, non-motile, non-spore-forming, obligately anaerobic bacterium, designated strain ZHW00191T, was isolated from human faeces and characterized by using a polyphasic taxonomic approach. Growth occurred at 25-45 °C (optimum, 37-42 °C), at pH 5.5-10.0 (optimum, pH 6.5-7.0) and with...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003925

    authors: Chen XJ,Wang ZQ,Zhou ZY,Zeng NY,Huang QF,Wang ZW,Tang WL,Zhou HW

    更新日期:2020-05-01 00:00:00

  • Maribacter algarum sp. nov., a new member of the family Flavobacteriaceae isolated from the red alga Gelidium amansii.

    abstract::A Gram-stain-negative, rod-shaped (0.2-0.3×1.0-2.4 µm), catalase-positive, oxidase-negative and non-motile bacterium, designated strain RZ26T, was isolated from the marine red algae collected from the coast of Weihai, PR China. Growth of strain RZ26T occurred at 15-33 °C (optimum, 25-28 °C), pH 6.0-9.5 (optimum, pH 7....

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004220

    authors: Zhang JY,Xia Y,Feng X,Mu DS,Du ZJ

    更新日期:2020-06-01 00:00:00

  • Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria.

    abstract::A polyphasic approach was used to clarify the taxonomy of the water-bloom-forming oscillatorioid cyanobacteria. Seventy-five strains of oscillatorioid cyanobacteria were characterized by 16S rDNA sequence analysis, DNA base composition, DNA-DNA hybridization, fatty acid composition, phycobilin pigment composition, com...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-5-1577

    authors: Suda S,Watanabe MM,Otsuka S,Mahakahant A,Yongmanitchai W,Nopartnaraporn N,Liu Y,Day JG

    更新日期:2002-09-01 00:00:00

  • Dysgonomonas alginatilytica sp. nov., an alginate-degrading bacterium isolated from a microbial consortium.

    abstract::Gram-stain-negative, facultatively anaerobic, non-motile, non-spore-forming, rod-shaped bacterium, designated strain HUA-2T, was isolated from an alginate-degrading microbial consortium. Strain HUA-2T was related to Dysgonomonas capnocytophagoides JCM 16697T, Dysgonomonas macrotermitis JCM 19375T and Dysgonomonas moss...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000459

    authors: Kita A,Miura T,Okamura Y,Aki T,Matsumura Y,Tajima T,Kato J,Nakashimada Y

    更新日期:2015-10-01 00:00:00

  • Stenotrophomonas lactitubi sp. nov. and Stenotrophomonas indicatrix sp. nov., isolated from surfaces with food contact.

    abstract::Five Gram-stain-negative, rod-shaped, none-spore-forming isolates were obtained from biofilms on different sites of a milking machine in Germany. Another strain with similar morphological characteristics was isolated from dirty dishes. Based on phylogenetic analysis of the 16S rRNA and gyrB genes, all isolates were as...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002732

    authors: Weber M,Schünemann W,Fuß J,Kämpfer P,Lipski A

    更新日期:2018-06-01 00:00:00

  • Marortus luteolus gen. nov., sp. nov., isolated from surface seawater of the East Sea in China.

    abstract::A Gram-stain-negative, motile, aerobic, rod-shaped bacterium with flagella, designated ZX-21T, was isolated from surface seawater of the East Sea in Zhoushan, China. Growth of strain ZX-21T was observed at 10--35  o°C (optimum, 30 °C), at pH 6.0-8.5 (pHoptimum 6.5-7.0) and in the presence of 0.5-8 % (w/v) NaCl (optimu...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003348

    authors: Yu XD,Yu XY,Fu GY,Zhao Z,Shen X,Sun C,Wu M

    更新日期:2019-05-01 00:00:00

  • Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt.

    abstract::Three thermo-tolerant halophilic archaeal strains, SR-441T, SR-412 and SR-188, were isolated from commercial salt samples. Cells were non-motile pleomorphic rod-shaped, and stained Gram-negative. Colonies were pink-pigmented. The three strains were able to grow with 1.7-4.6 M NaCl (optimum, 2.5 M), at pH 6.5-9.0 (opti...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001455

    authors: Minegishi H,Shimogaki R,Enomoto S,Echigo A,Kondo Y,Nagaoka S,Shimane Y,Kamekura M,Itoh T,Ohkuma M,Nunoura T,Takai K,Usami R

    更新日期:2016-12-01 00:00:00

  • Thermoanaerobacter subterraneus sp. nov., a novel thermophile isolated from oilfield water.

    abstract::A new thermophilic, anaerobic glucose-fermenting, Gram-positive, rod-shaped bacterium, designated strain SEBR 7858T, was isolated from an oilfield water sample. Under optimal conditions on a glucose-containing medium (3% NaCl, 65 degrees C and pH 7.5), the generation time was 2.5 h. No growth occurred at 35 or 80 degr...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-6-2141

    authors: Fardeau ML,Magot M,Patel BK,Thomas P,Garcia JL,Ollivier B

    更新日期:2000-11-01 00:00:00

  • Desulfotignum toluenicum sp. nov., a novel toluene-degrading, sulphate-reducing bacterium isolated from an oil-reservoir model column.

    abstract::A Gram-negative, sulphate-reducing bacterium (strain H3(T)) was isolated from an oil-reservoir model column. The new isolate was able to oxidize toluene coupled to hydrogen sulphide production. For growth, the optimum salt concentration was 1.5 % (w/v), the optimum pH was 7.2 and the optimum temperature was 34 degrees...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65067-0

    authors: Ommedal H,Torsvik T

    更新日期:2007-12-01 00:00:00

  • Croceicoccus naphthovorans sp. nov., a polycyclic aromatic hydrocarbons-degrading and acylhomoserine-lactone-producing bacterium isolated from marine biofilm, and emended description of the genus Croceicoccus.

    abstract::A polycyclic aromatic hydrocarbons-degrading and acylhomoserine-lactone-producing marine bacterium, designated strain PQ-2(T), was isolated from marine biofilm collected from a boat shell at a harbour of Zhoushan island in Zhejiang Province, PR China. Strain PQ-2(T) is Gram-stain-negative, yellow-pigmented, non-motile...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000132

    authors: Huang Y,Zeng Y,Feng H,Wu Y,Xu X

    更新日期:2015-05-01 00:00:00

  • Paenibacillus solani sp. nov., isolated from potato rhizosphere soil.

    abstract::A novel Gram-stain-positive, endospore-forming bacterium, designated FJAT-22460T, was isolated from a soil sample of a potato field in Xinjiang Autonomous Region, China. Cells were rods that were catalase-positive and motile by peritrichous flagella. The strain was found to grow at temperatures ranging from 10 to 40 °...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001378

    authors: Liu B,Liu GH,Sengonca C,Schumann P,Lan JL,Chen DJ,Cui WD,Lin NQ

    更新日期:2016-11-01 00:00:00

  • Desulfuribacillus stibiiarsenatis sp. nov., an obligately anaerobic, dissimilatory antimonate- and arsenate-reducing bacterium isolated from anoxic sediments, and emended description of the genus Desulfuribacillus.

    abstract::A novel anaerobic, Gram-stain-negative, endospore-forming bacterium, designated strain MLFW-2T, was isolated from anoxic sediments collected from the drainage area of a geothermal spring near Mono Lake, CA, USA. Optimal growth was achieved at 34 °C and pH 8.25-8.50 in medium containing 0.75 % (w/v) NaCl. Catalase, but...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001732

    authors: Abin CA,Hollibaugh JT

    更新日期:2017-04-01 00:00:00

  • Winogradskyella pulchriflava sp. nov., isolated from marine sediment.

    abstract::A taxonomic study was conducted on strain EM106(T), isolated from a sediment sample of the East Sea, Republic of Korea. Comparative 16S rRNA gene sequence analyses showed that strain EM106(T) belongs to the family Flavobacteriaceae and is most closely related to Winogradskyella echinorum KMM 6211(T) and Winogradskyell...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.049502-0

    authors: Kim SJ,Choi YR,Park SJ,Kim JG,Shin KS,Roh DH,Rhee SK

    更新日期:2013-08-01 00:00:00

  • Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter.

    abstract::A Gram-negative, rod-shaped, non-spore-forming bacterium (strain AR107(T)) was isolated from the drinking water distribution system of Seville (Spain). A polyphasic taxonomic study of the isolate resulted in its identification as a member of the genus Pedobacter. On the basis of 16S rRNA gene sequence comparisons, str...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64176-0

    authors: Gallego V,García MT,Ventosa A

    更新日期:2006-08-01 00:00:00

  • Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences.

    abstract::A new taxonomy of the green sulfur bacteria is proposed, based on phylogenetic relationships determined using the sequences of the independent 16S rRNA and fmo (Fenna-Matthews-Olson protein) genes, and supported by the DNA G + C content and sequence signatures. Comparison of the traditional classification system for t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02403-0

    authors: Imhoff JF

    更新日期:2003-07-01 00:00:00

  • Shinella pollutisoli sp. nov., isolated from tetrabromobisphenol A-contaminated soil.

    abstract::Strain AH-1T, a Gram-negative, aerobic, non-spore-forming, motile, rod-shaped bacterium, was isolated from tetrabromobisphenol A-contaminated soil in China. The taxonomic position was investigated using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain AH-1T was a membe...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002883

    authors: Mu Y,Jia WB,Ke Z,Zhuang W,Wang HM,Jiang JD,Chen K,Chen Q

    更新日期:2018-08-01 00:00:00

  • Recommendations of the subcommittee on the taxonomy of Campylobacter and related bacteria.

    abstract::The ICSB Subcommittee on the taxonomy of Campylobacter and related bacteria has discussed several contemporaneous issues and makes the following recommendations. (i) The reported synonymy between Campylobacter coli and Campylobacter hyoilei was based on valid taxonomic arguments. The subcommittee therefore discourages...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 指南,杂志文章

    doi:10.1099/00207713-51-2-719

    authors: Vandamme P,On SL

    更新日期:2001-03-01 00:00:00