Actinomadura rhizosphaerae sp. nov., isolated from rhizosphere soil of the plant Azadirachta indica.

Abstract:

:A novel actinomycete, strain SDA37T, belonging to the genus Actinomadura, was isolated from rhizosphere soil collected from Udon Thani Province, Thailand. The taxonomic position of the strain was characterized using a polyphasic approach. Meso-diaminopimelic acid, glucose, ribose, galactose and madurose were detected in cell-wall and whole-cell hydrolysates. The N-acyl type of muramic acid was acetyl. Menaquinones were MK-9(H6), MK-9(H8) and MK-9(H4). The predominant cellular fatty acids were iso-C16 : 0, C16 : 0, 10-methyl C18 : 0 and iso-C14 : 0. The major polar lipids were phosphatidylglycerol, diphosphatidylglycerol and phosphatidylinositol. blast analysis of the almost-complete 16S rRNA gene sequence showed 98.8 % similarity to Actinomadura oligospora NBRC 104149T, 98.7 % similarity to Actinomadura gamaensis DSM 100815T and 97.2 % similarity to Actinomadura rupiterrae KCTC 19559T. The DNA G+C content was 73.1 mol%. Strain SDA37T showed low DNA-DNA relatedness (44.3±7.3 to 58.5±8.7 %) to A. oligospora NBRC 104149T, Actinomadura gamaensis DSM 100815T and Actinomadura rupiterrae KCTC 19559T. The new strain could also be distinguished from its closely related strains by the differences in the phenotypic characteristics. The results of taxonomic analysis suggested that strain SDA37T represented a novel species of the genus Actinomadura for which the name Actinomadura rhizosphaerae sp. nov. is proposed. The type strain is SDA37T (=KCTC 39965T=NBRC 112909T=TISTR 2523T).

authors

Malisorn K,Kanchanasin P,Phongsopitanun W,Tanasupawat S

doi

10.1099/ijsem.0.002940

subject

Has Abstract

pub_date

2018-09-01 00:00:00

pages

3012-3016

issue

9

eissn

1466-5026

issn

1466-5034

journal_volume

68

pub_type

杂志文章
  • Cryptococcus nyarrowii sp. nov., a basidiomycetous yeast from Antarctica.

    abstract::In December 1997, 196 soil and snow samples were collected from Vestvold Hills, Davis Base, Antarctica. Two isolates, CBS 8804T (pink colonies) and CBS 8805 (yellow colonies), were shown by proteome analysis and DNA sequencing to represent the same species. Results from the sequencing of the D1/D2 region of the large ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-3-1033

    authors: Thomas-Hall S,Watson K

    更新日期:2002-05-01 00:00:00

  • Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest.

    abstract::Four isolates (FSL S4-120(T), FSL S4-696, FSL S4-710, and FSL S4-965) of Gram-positive, motile, facultatively anaerobic, non-spore-forming bacilli that were phenotypically similar to species of the genus Listeria were isolated from soil, standing water and flowing water samples obtained from the natural environment in...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.014118-0

    authors: Graves LM,Helsel LO,Steigerwalt AG,Morey RE,Daneshvar MI,Roof SE,Orsi RH,Fortes ED,Milillo SR,den Bakker HC,Wiedmann M,Swaminathan B,Sauders BD

    更新日期:2010-06-01 00:00:00

  • Geodermatophilus marinus sp. nov., isolated from the marine sponge Leucetta chagosensis.

    abstract::A novel actinobacterium, designated LHW52908T, was isolated from a marine sponge, Leucettachagosensis, collected in the South China Sea. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain LHW52908T was member of the family Geodermatophilaceae, with highest similarities to Geodermatophilus obscur...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003478

    authors: Li L,Zhang D,Tang WZ,Lin HW,Lu YH

    更新日期:2019-10-01 00:00:00

  • Streptomyces pini sp. nov., an actinomycete isolated from phylloplane of pine (Pinus sylvestris L.) needle-like leaves.

    abstract::A novel siderophore-producing actinomycete, designated PL19T, was isolated from the Scots-pine needle-like leaves collected from TNAU campus, Coimbatore, India. The isolate was chemoorganotrophic in nutrition and able to grow at 30 °C, and the optimum pH and NaCl facilitated the growth pH 6-11 and 0-8 % (w/v), respect...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001336

    authors: Madhaiyan M,Poonguzhali S,Saravanan VS,Duraipandiyan V,Al-Dhabi NA,Pragatheswari D,Santhanakrishnan P,Kim SJ,Weon HY,Kwon SW

    更新日期:2016-10-01 00:00:00

  • Francisella guangzhouensis sp. nov., isolated from air-conditioning systems.

    abstract::Four strains (08HL01032(T), 09HG994, 10HP82-6 and 10HL1960) were isolated from water of air-conditioning systems of various cooling towers in Guangzhou city, China. Cells were Gram-stain-negative coccobacilli without flagella, catalase-positive and oxidase-negative, showing no reduction of nitrate, no hydrolysis of ur...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.049916-0

    authors: Qu PH,Chen SY,Scholz HC,Busse HJ,Gu Q,Kämpfer P,Foster JT,Glaeser SP,Chen C,Yang ZC

    更新日期:2013-10-01 00:00:00

  • 'Candidatus Phytoplasma cirsii', a novel taxon from creeping thistle [Cirsium arvense (L.) Scop].

    abstract::Creeping thistle [Cirsium arvense (L.) Scop.] and dahlia (Dahlia sp.) plants showing typical symptoms of phytoplasma infection including yellowing, stunting, inflorescence and proliferation, were sampled; the presence of phytoplasma was confirmed by standard PCR using universal primers. RFLP analysis allowed classific...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000937

    authors: Šafárˇová D,Zemánek T,Válová P,Navrátil M

    更新日期:2016-04-01 00:00:00

  • Mrakia stelviica sp. nov. and Mrakia montana sp. nov., two novel basidiomycetous yeast species isolated from cold environments.

    abstract::Five yeast strains were isolated from soil and sediments collected from Alps and Apennines glaciers during sampling campaigns carried out in summer 2007 and 2017, respectively. Based on morphological and physiological tests and on phylogenetic analyses reconstructed with ITS and D1/D2 sequences, the five strains were ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004336

    authors: Turchetti B,Sannino C,Mezzasoma A,Zucconi L,Onofri S,Buzzini P

    更新日期:2020-08-01 00:00:00

  • Pseudidiomarina sediminum sp. nov., a marine bacterium isolated from coastal sediments of Luoyuan Bay in China.

    abstract::A strain of heterotrophic, facultatively anaerobic, marine bacterium, designated strain c121T, was isolated from coastal sediment of Luoyuan Bay, in Fujian province, PR China. Analysis of the 16S rRNA gene sequence revealed an affiliation with the genus Pseudidiomarina; the sequence similarity between c121T and Pseudi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65199-0

    authors: Hu ZY,Li Y

    更新日期:2007-11-01 00:00:00

  • Limibaculum halophilum gen. nov., sp. nov., a new member of the family Rhodobacteraceae.

    abstract::A Gram-stain-negative, cream-pigmented, aerobic, non-motile, non-spore-forming and short-rod-shaped bacterial strain, designated CAU 1123T, was isolated from mud from reclaimed land. The strain's taxonomic position was investigated by using a polyphasic approach. Strain CAU 1123T grew optimally at 37 °C and at pH 7.5 ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002200

    authors: Shin YH,Kim JH,Suckhoom A,Kantachote D,Kim W

    更新日期:2017-10-01 00:00:00

  • Alloscardovia macacae sp. nov., isolated from the milk of a macaque (Macaca mulatta), emended description of the genus Alloscardovia and proposal of Alloscardovia criceti comb. nov.

    abstract::A novel bacterial strain, designated M8(T), was isolated from milk of a female macaque bred in captivity. The strain was Gram-stain-positive, anaerobic, irregular coccoid-rod-shaped without catalase activity. Analysis of 16S rRNA gene sequence similarity revealed that the isolate was most closely related to Alloscardo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.051326-0

    authors: Killer J,Ročková Š,Vlková E,Rada V,Havlík J,Kopečný J,Bunešová V,Benada O,Kofroňová O,Pechar R,Profousová I

    更新日期:2013-12-01 00:00:00

  • Hymenobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from soil.

    abstract::A non-motile, rod-shaped, red-pigmented bacterium, designated strain BZ33r(T), was isolated from soil of an industrial site. Cells stained Gram-negative and were aerobic and psychrophilic, showing good growth at 1-20 °C. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain BZ33r(T) was related to ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.023465-0

    authors: Zhang DC,Busse HJ,Liu HC,Zhou YG,Schinner F,Margesin R

    更新日期:2011-04-01 00:00:00

  • Xuhuaishuia manganoxidans gen. nov., sp. nov., a manganese-oxidizing bacterium isolated from deep-sea sediments from the Pacific Polymetallic Nodule Province.

    abstract::A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped, manganese-oxidizing bacterial strain, designated DY6-4T, was isolated from the surface sediment of the Pacific Clarion-Clipperton Fracture Zone. Phylogenetic analysis, based on 16S rRNA gene sequences, indicated that strain DY6-4T formed a lineage within...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000912

    authors: Wang L,Liu Y,Shi X,Wang Y,Zheng Y,Dai X,Zhang XH

    更新日期:2016-03-01 00:00:00

  • Camelimonas abortus sp. nov., isolated from placental tissue of cattle.

    abstract::A gram-negative, rod-shaped, non-spore-forming bacterium, isolated from placental tissue of a cow, was investigated for its taxonomic position. On the basis of 16S rRNA gene sequence similarities, strain UK34/07-5(T) was shown to belong to the class Alphaproteobacteria, closely related to the type strain of Camelimona...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.034389-0

    authors: Kämpfer P,Scholz HC,Lodders N,Loncaric I,Whatmore AM,Busse HJ

    更新日期:2012-05-01 00:00:00

  • Prevotella aurantiaca sp. nov., isolated from the human oral cavity.

    abstract::Two anaerobic, pigmented, non-spore-forming, Gram-stain-negative, rod-shaped strains isolated from the human oral cavity, OMA31(T) and OMA130, were characterized by determining their phenotypic and biochemical features, cellular fatty acid profiles and phylogenetic positions based on 16S rRNA gene sequence analysis. 1...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.012831-0

    authors: Sakamoto M,Suzuki N,Okamoto M

    更新日期:2010-03-01 00:00:00

  • Nonomuraea antimicrobica sp. nov., an endophytic actinomycete isolated from a leaf of Maytenus austroyunnanensis.

    abstract::A novel actinomycete strain, designated YIM 61105(T), was isolated from a leaf of Maytenus austroyunnanensis from the tropical rainforest in Xishuangbanna, Yunnan Province, south-west China. A 16S rRNA gene sequence analysis revealed that the organism belonged to the phylogenetic cluster of the genus Nonomuraea and wa...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.010660-0

    authors: Qin S,Zhao GZ,Klenk HP,Li J,Zhu WY,Xu LH,Li WJ

    更新日期:2009-11-01 00:00:00

  • DNA-DNA reassociation studies of Streptococcus constellatus with unusual 16S rRNA sequences.

    abstract::DNA-DNA reassociation studies were performed on previously described 'CI strains', which form an unusual 16S rRNA population within the 'anginosus' group of Streptococcus. The CI strains displayed reassociation values of >70% with the Streptococcus constellatus NCDO 2226T strain, with Tm values <1 degrees C, indicatin...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-1-247

    authors: Jacobs JA,Schouls LM,Whiley RA

    更新日期:2000-01-01 00:00:00

  • Bowmanella denitrificans gen. nov., sp. nov., a denitrifying bacterium isolated from seawater from An-Ping Harbour, Taiwan.

    abstract::A heterotrophic, non-fermentative, denitrifying isolate, designated strain BD1(T), was obtained from a seawater sample collected in the shallow coastal region of An-Ping Harbour, Tainan, Taiwan. The cells of strain BD1(T) were Gram-negative. Cells grown in broth cultures were curved rods that were motile by means of a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64306-0

    authors: Jean WD,Chen JS,Lin YT,Shieh WY

    更新日期:2006-10-01 00:00:00

  • Paenibacillus cavernae sp. nov., isolated from soil of a natural cave.

    abstract::A Gram-reaction-variable, strictly aerobic, motile, rod-shaped bacterium, designated strain C4-5T, was isolated from soil of a natural cave. Cells were oxidase- and catalase-positive and formed endospores in sporangia. The 16S rRNA gene sequence comparison showed that the organism formed a distinct clade within the ge...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000762

    authors: Dong Lee S

    更新日期:2016-02-01 00:00:00

  • Lewinella xylanilytica sp. nov., a member of the family Saprospiraceae isolated from coastal seawater.

    abstract::An orange-pigmented bacterium, designated strain 13-9-B8T, was isolated from a seawater sample collected at Marado, Jeju Island, South Korea. The novel strain was Gram-staining-negative, non-motile, non-gliding, rod-shaped and aerobic. A phylogenetic analysis based on 16S rRNA gene sequences revealed that the strain c...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000435

    authors: Sung HR,Lee JM,Kim M,Shin KS

    更新日期:2015-10-01 00:00:00

  • Deinococcus wulumuqiensis sp. nov., and Deinococcus xibeiensis sp. nov., isolated from radiation-polluted soil.

    abstract::The taxonomic positions of two gamma- and UV-ray-resistant strains isolated from radiation-polluted soil in north-west China were determined in a polyphasic study. The organisms, designated R12(T) and R13(T), were Gram-stain-positive, non-spore-forming cocci, which contained MK-8 as the major respiratory quinone and C...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.015917-0

    authors: Wang W,Mao J,Zhang Z,Tang Q,Xie Y,Zhu J,Zhang L,Liu Z,Shi Y,Goodfellow M

    更新日期:2010-09-01 00:00:00

  • Nocardia aurantiaca sp. nov., isolated from soil in Thailand.

    abstract::A novel actinomycete strain, CT2-14T, belonging to the genus Nocardia, was isolated from a soil sample collected from Phichit Province, Thailand. The taxonomic position of the strain was characterized using a polyphasic approach. The strain grew at 15-40 °C (optimum, 28-37 °C), pH 6-11 (optimum, pH 6-8) and on an Inte...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004432

    authors: Kanchanasin P,Yuki M,Kudo T,Ohkuma M,Phongsopitanun W,Tanasupawat S

    更新日期:2020-10-01 00:00:00

  • Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea.

    abstract::An orange-coloured bacterial strain, designated R2A15-11(T), was isolated from greenhouse soil. The strain was found to be strictly aerobic, Gram-negative, non-spore-forming and non-flagellated. The cells were short rods (0.7-0.9x1.0-1.5 mum) and produced flexirubin. Growth of the strain was observed at 10-35 degrees ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64614-0

    authors: Kim BY,Weon HY,Yoo SH,Hong SB,Kwon SW,Stackebrandt E,Go SJ

    更新日期:2007-03-01 00:00:00

  • Methanofervidicoccus abyssi gen. nov., sp. nov., a hydrogenotrophic methanogen, isolated from a hydrothermal vent chimney in the Mid-Cayman Spreading Center, the Caribbean Sea.

    abstract::A novel hydrogenotrophic methanogen, strain HHBT, was isolated from a deep-sea hydrothermal vent chimney sample collected from Beebe Vent Field at the Mid-Cayman Spreading Center, Caribbean Sea. The cells were non-motile regular to irregular cocci possessing several flagella. The novel isolate grew at 60-80 °C, pH 5.0...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003297

    authors: Sakai S,Takaki Y,Miyazaki M,Ogawara M,Yanagawa K,Miyazaki J,Takai K

    更新日期:2019-04-01 00:00:00

  • Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines.

    abstract::Taxonomic studies were performed on ten hydrogen-oxidizing, facultatively chemolithotrophic bacteria that were isolated from volcanic mudflow deposits derived from the eruption of Mt. Pinatubo in the Philippines in 1991. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these isolates belonged to t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63922-0

    authors: Sato Y,Nishihara H,Yoshida M,Watanabe M,Rondal JD,Concepcion RN,Ohta H

    更新日期:2006-05-01 00:00:00

  • Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species.

    abstract::Bacteria identified and classified as Pseudomonas stutzeri, on the basis of traditional criteria, are recognized to be markedly heterogeneous, such that a systematic phenotypic characterization has not been correlated with genotypic groupings (i.e. genomovars) based upon DNA-DNA similarities. The internally transcribe...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-4-1629

    authors: Guasp C,Moore ER,Lalucat J,Bennasar A

    更新日期:2000-07-01 00:00:00

  • Ottowia pentelensis sp. nov., a floc-forming betaproteobacterium isolated from an activated sludge system treating coke plant effluent.

    abstract::A Gram-negative-staining, short-rod-shaped, floc-forming bacterium, designated strain RB3-7(T), was isolated from a laboratory-scale activated sludge system treating coke plant effluent. Comparative analysis of the 16S rRNA gene sequence demonstrated that the novel isolate was distantly related (≤ 95.8 % similarity) t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.020818-0

    authors: Felföldi T,Kéki Z,Sipos R,Márialigeti K,Tindall BJ,Schumann P,Tóth EM

    更新日期:2011-09-01 00:00:00

  • Planotetraspora thailandica sp. nov., isolated from soil in Thailand.

    abstract::A Gram-positive-staining, filamentous bacterial strain that developed cylindrical sporangia containing four oval- to rod-shaped spores at the ends of short sporangiophores on branched aerial mycelium was isolated from tropical rainforest soil near a hot spring. The cell-wall peptidoglycan contained meso-diaminopimelic...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.003228-0

    authors: Suriyachadkun C,Chunhametha S,Thawai C,Tamura T,Potacharoen W,Kirtikara K,Sanglier JJ

    更新日期:2009-05-01 00:00:00

  • Lactobacillus kimchicus sp. nov., a β-glucosidase-producing bacterium isolated from kimchi.

    abstract::A Gram-reaction-positive, non-spore-forming, rod-shaped, non-motile, β-glucosidase-producing bacterium, designated DCY51(T), was isolated from kimchi, a Korean fermented vegetable food. 16S rRNA gene sequence analysis revealed that strain DCY51(T) belonged to the genus Lactobacillus and exhibited highest 16S rRNA gene...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.017418-0

    authors: Liang ZQ,Srinivasan S,Kim YJ,Kim HB,Wang HT,Yang DC

    更新日期:2011-04-01 00:00:00

  • Flavobacterium phragmitis sp. nov., an endophyte of reed (Phragmites australis).

    abstract::A Gram-staining-negative bacterium, designated strain BLN2(T), was isolated from within the roots of reeds (Phragmites australis) in Beijing Cuihu Wetland (China) and characterized using a polyphasic taxonomic approach. The cells were yellow-pigmented, rod-shaped, strictly aerobic and devoid of flagella, but showed gl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.027417-0

    authors: Liu M,Li YH,Liu Y,Zhu JN,Liu QF,Liu Y,Gu JG,Zhang XX,Li CL

    更新日期:2011-11-01 00:00:00

  • Streptomyces zinciresistens sp. nov., a zinc-resistant actinomycete isolated from soil from a copper and zinc mine.

    abstract::A filamentous actinomycete, designated strain CCNWNQ 0016(T), was isolated from soil from a zinc and copper mine in Shaanxi province, north-western China. A polyphasic taxonomic study was carried out to establish the status of strain CCNWNQ 0016(T). Chemical and morphological properties of the isolate were similar to ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024018-0

    authors: Lin YB,Wang XY,Li HF,Wang NN,Wang HX,Tang M,Wei GH

    更新日期:2011-03-01 00:00:00