Spectroscopic and magnetic studies of human ceruloplasmin: identification of a redox-inactive reduced Type 1 copper site.

Abstract:

:Ceruloplasmin is unique among the multicopper oxidases in that in addition to the usual copper stoichiometry of one Type 1 copper site and a Type 2/Type 3 trinuclear copper cluster, it contains two other Type 1 sites. This assignment of copper sites, based on copper quantitation, sequence alignment, and crystallography, is difficult to reconcile with the observed spectroscopy. Furthermore, some chemical or spectroscopic differences in ceruloplasmin have been reported depending on the method of purification. We have studied the resting (as isolated by a fast, one-step procedure) and peroxide-oxidized forms of human ceruloplasmin. Using a combination of X-ray absorption spectroscopy, a chemical assay, magnetic susceptibility, electron paramagnetic resonance spectroscopy, and absorption spectroscopy, we have determined that peroxide-oxidized ceruloplasmin contains one permanently reduced Type 1 site. This site is shown to have a reduction potential of approximately 1.0 V. Thus, one of the additional Type 1 sites in ceruloplasmin cannot be catalytically relevant in the form of the enzyme studied. Furthermore, the resting form of the enzyme contains an additional reducing equivalent, which is distributed among the remaining five copper sites as expected from their relative potentials. This may indicate that the resting form of ceruloplasmin in plasma under aerobic conditions is a four-electron oxidized form, which is consistent with its function in the four-electron reduction of dioxygen to water.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Machonkin TE,Zhang HH,Hedman B,Hodgson KO,Solomon EI

doi

10.1021/bi980434v

subject

Has Abstract

pub_date

1998-06-30 00:00:00

pages

9570-8

issue

26

eissn

0006-2960

issn

1520-4995

pii

bi980434v

journal_volume

37

pub_type

杂志文章
  • 1H NMR study of the base-pairing reactions of d(GGAATTCC): salt and polyamine effects on the imino proton exchange.

    abstract::Salts and polyamines have a variety of effects on the physical properties of DNA, including stabilization against thermal melting. We wished to gain greater insight into the mechanism of this stabilization by ascertaining its effect on the dynamics of base opening and closing reactions, as measured by NMR. Since the b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00404a018

    authors: Braunlin WH,Bloomfield VA

    更新日期:1988-02-23 00:00:00

  • Structural basis of the anionic interface preference and kcat* activation of pancreatic phospholipase A2.

    abstract::Pancreatic phospholipase A(2) (PLA2) shows a strong preference for the binding to the anionic interface and a consequent allosteric activation. In this paper, we show that virtually all the preference is mediated through 3 (Lys-53, -56, and -120) of the 12 cationic residues of bovine pancreatic PLA2. The lysine-to-met...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000740k

    authors: Yu BZ,Poi MJ,Ramagopal UA,Jain R,Ramakumar S,Berg OG,Tsai MD,Sekar K,Jain MK

    更新日期:2000-10-10 00:00:00

  • Thermodynamics and specificity of the Mbp1-DNA interaction.

    abstract::The DNA binding domain of the yeast transcription factor Mbp1 is a winged helix-turn-helix structure, with an extended DNA binding site involving C-terminal "tail" residues. The thermodynamics of the interaction of the DNA binding domain with its target DNA sequence have been determined using fluorescence anisotropy a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi702339q

    authors: Deleeuw L,Tchernatynskaia AV,Lane AN

    更新日期:2008-06-17 00:00:00

  • Inhibition of protein phosphatase 2A activity by selective electrophile alkylation damage.

    abstract::Protein serine/threonine phosphatase 2A (PP2A) is a critical regulator of numerous cellular signaling processes and a potential target for reactive electrophiles that dysregulate phosphorylation-dependent signal transduction cascades. The predominant cellular form of PP2A is a heterotrimeric holoenzyme consisting of a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060551n

    authors: Codreanu SG,Adams DG,Dawson ES,Wadzinski BE,Liebler DC

    更新日期:2006-08-22 00:00:00

  • Heterogeneous glycosylation of immunoglobulin E constructs characterized by top-down high-resolution 2-D mass spectrometry.

    abstract::Posttranslational glycosylation is critical for biological function of many proteins, but its structural characterization is complicated by natural heterogeneity, multiple glycosylation sites, and different forms. Here, a top-down mass spectrometry (MS) characterization is applied to three constructs of the Fc segment...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9919091

    authors: Fridriksson EK,Beavil A,Holowka D,Gould HJ,Baird B,McLafferty FW

    更新日期:2000-03-28 00:00:00

  • "Partly folded" state, a new equilibrium state of protein molecules: four-state guanidinium chloride-induced unfolding of beta-lactamase at low temperature.

    abstract::Guanidinium chloride- (GdmCl-) induced unfolding of beta-lactamase has been investigated by a combination of size-exclusion chromatography (SEC-FPLC) and usual optical methods. It has been shown that at low temperatures this protein unfolds through two equilibrium intermediates. The first of these intermediates is the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00176a006

    authors: Uversky VN,Ptitsyn OB

    更新日期:1994-03-15 00:00:00

  • Conformational fluctuation of native-like and molten-globule-like cytochrome c observed by time-resolved hole burning.

    abstract::Nanosecond to millisecond conformational fluctuations of Zn-substituted cytochrome c (ZnCytc) have been studied by the time-resolved transient hole-burning method. The investigation of low-temperature dynamics has been made on the ZnCytc solution sample in a water-glycerol mixture. The conformational fluctuations in t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981568b

    authors: Shibata Y,Takahashi H,Kaneko R,Kurita A,Kushida T

    更新日期:1999-02-09 00:00:00

  • Activator-dependent preinduction binding of sigma-70 RNA polymerase at the metal-regulated mer promoter.

    abstract::Expression of the Tn21 mercury-resistance (mer) locus is controlled by the merR gene product, which represses mer structural gene (merTPCAD) transcription in the absence of mercuric ion [Hg(II)] and activates it in the presence of Hg(II). In vivo DNA methylation of the mer regulatory region (merOP) shows that, with or...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00493a011

    authors: Heltzel A,Lee IW,Totis PA,Summers AO

    更新日期:1990-10-16 00:00:00

  • Activation of the Class Ib Ribonucleotide Reductase by a Flavodoxin Reductase in Bacillus cereus.

    abstract::To reduce ribonucleotides to deoxyribonucleotides, the manganese-bound form of class Ib ribonucleotide reductase (RNR) must be activated via a pathway that involves redox protein(s). The reduced flavoprotein NrdI is an important protein in this pathway, as it reduces dioxygen to superoxide. Superoxide then reacts with...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00699

    authors: Lofstad M,Gudim I,Hammerstad M,Røhr ÅK,Hersleth HP

    更新日期:2016-09-13 00:00:00

  • Probing the nucleotide binding sites of axonemal dynein with the fluorescent nucleotide analogue 2'(3')-O-(-N-Methylanthraniloyl)-adenosine 5'-triphosphate.

    abstract::MantATP [2'(3')-O-(-N-methylanthraniloyl)-adenosine 5'-triphosphate] was employed as a fluorescence probe of the nucleotide-binding sites of dynein from sea urchin sperm flagella. MantATP binds specifically with enhanced fluorescence (approximately 2.2-fold), homogeneous lifetime (8.4 ns), and high anisotropy (r appro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9730184

    authors: Mocz G,Helms MK,Jameson DM,Gibbons IR

    更新日期:1998-07-07 00:00:00

  • Conformation of valine side chains in ribonuclease T1 determined by NMR studies of homonuclear and heteronuclear 3J coupling constants.

    abstract::A conformational analysis of the valine side chains of ribonuclease T1 (RNase T1) was performed using NMR spectroscopy, in particular homonuclear (1H, 1H and 13C, 13C) and heteronuclear (1H, 15N and 1H, 13C) vicinal spin-spin coupling constants as obtained from E.COSY-type NMR experiments. The coupling constants relat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00184a017

    authors: Karimi-Nejad Y,Schmidt JM,Rüterjans H,Schwalbe H,Greisinger C

    更新日期:1994-05-10 00:00:00

  • Dimerization of the extracellular domain of the erythropoietin (EPO) receptor by EPO: one high-affinity and one low-affinity interaction.

    abstract::Although there is considerable evidence that signaling by the erythropoietin (EPO) receptor is initiated when it is dimerized by binding EPO, it has been previously reported that the soluble extracellular domains of the EPO receptor (sEPOR) are not dimerized in the presence of EPO and are able to form only 1:1 complex...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9524272

    authors: Philo JS,Aoki KH,Arakawa T,Narhi LO,Wen J

    更新日期:1996-02-06 00:00:00

  • Differential susceptibility of transferrin glycoforms to chymotrypsin: a proteomics approach to the detection of carbohydrate-deficient transferrin.

    abstract::Transferrin exhibits heterogeneity in glycosylation characteristic of pathological changes in alcohol abuse and congenital disorders in glycosylation. This study investigated an alternative approach in the detection of carbohydrate-deficient transferrin based on the premise that glycosylation may afford some degree of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051749v

    authors: Valmu L,Kalkkinen N,Husa A,Rye PD

    更新日期:2005-12-13 00:00:00

  • Efficient and selective photoaffinity labeling of the estrogen receptor using two nonsteroidal ligands that embody aryl azide or tetrafluoroaryl azide photoreactive functions.

    abstract::3-(4-Azido-2,3,5,6-tetrafluorobenzoyl)-6-hydroxy-2-(4- hydroxyphenyl)benzo[b]thiophene 1 (tetrafluoroaryl azide, TFAA) and its protio analogue 3-(4-azidobenzoyl)-6- hydroxy-2-(4-hydroxyphenyl)benzo[b]thiophene 2 (protioaryl azide, PAA), photoaffinity labeling (PAL) reagents for the estrogen receptor (ER), have been pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00223a018

    authors: Pinney KG,Carlson KE,Katzenellenbogen BS,Katzenellenbogen JA

    更新日期:1991-03-05 00:00:00

  • Cytochrome c peroxidase mutant active site structures probed by resonance Raman and infrared signatures of the CO adducts.

    abstract::Vibrational frequencies associated with FeC and CO stretching and FeCO bending modes have been determined via resonance Raman (RR) and infrared (IR) spectroscopy for cytochrome c peroxidase (CCP) mutants prepared by site-directed mutagenesis. These include the bacterial "wild type", CCP(MI), and mutations involving gr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00415a015

    authors: Smulevich G,Mauro JM,Fishel LA,English AM,Kraut J,Spiro TG

    更新日期:1988-07-26 00:00:00

  • Investigation of the S3 electron paramagnetic resonance signal from the oxygen-evolving complex of photosystem 2: effect of inhibition of oxygen evolution by acetate.

    abstract::An S3 electron paramagnetic resonance (EPR) signal is observed in a variety of photosystem 2 (PS2) samples in which the oxygen-evolving complex (OEC) has been inhibited. These signals have been proposed to be due to an interaction, S2X+, between the manganese cluster in an oxidation state equivalent to S2 and an organ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00088a032

    authors: MacLachlan DJ,Nugent JH

    更新日期:1993-09-21 00:00:00

  • Electrostatic effects in myoglobin. Application of the modified Tanford-Kirkwood theory to myoglobins from horse, California grey whale, harbor seal, and California sea lion.

    abstract::The modified Tanford-Kirkwood electrostatic theory (Shire et al., 1974a) was applied to ferrimyoglobins from the following animal species: sperm whale (Physeter catodon), horse, California grey whale (Eschrichtius gibbosus), harbor seal (Phoca vitulina), and California sea lion (Zalophus californianus). Computations w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00678a002

    authors: Shire SJ,Hanania GI,Gurd FR

    更新日期:1975-04-08 00:00:00

  • GTP hydrolysis of cell division protein FtsZ: evidence that the active site is formed by the association of monomers.

    abstract::The essential prokaryotic cell division protein FtsZ is a tubulin homologue that forms a ring at the division site. FtsZ forms polymers in a GTP-dependent manner. Recent biochemical evidence has shown that FtsZ forms multimeric structures in vitro and in vivo and functions as a self-activating GTPase. Structural analy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011370i

    authors: Scheffers DJ,de Wit JG,den Blaauwen T,Driessen AJ

    更新日期:2002-01-15 00:00:00

  • Enolpyruvate: chemical determination as a pyruvate kinase intermediate.

    abstract::Despite many studies suggesting the role of enolpyruvate as a bound intermediate in the pyruvate kinase reaction, direct evidence for it has been lacking. By use of a combination of chemical trapping and isolation of a derivative, significant amounts of enzyme-bound enolpyruvate have now been demonstrated. The method ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00217a022

    authors: Seeholzer SH,Jaworowski A,Rose IA

    更新日期:1991-01-22 00:00:00

  • A protein dissection study of a molten globule.

    abstract::Proteins have many distinct tertiary folds (Richardson, J. S. (1981) Adv. Prot. Chem. 34, 167-339). The term tertiary fold refers to the spatial organization of secondary structure elements (alpha-helices and beta-strands). It is not known when, in the process of protein folding, a native tertiary fold emerges. Here, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00174a021

    authors: Peng ZY,Kim PS

    更新日期:1994-03-01 00:00:00

  • Competitive binding of ATP and the fluorescent substrate analogue 2',3'-O-(2,4,6-trinitrophenylcyclohexadienylidine) adenosine 5'-triphosphate to the gastric H+,K+-ATPase: evidence for two classes of nucleotide sites.

    abstract::ATP and the fluorescent substrate analogue TNP-ATP bind competitively to the gastric H,-K-ATPase. Substrate and product completely reverse the fluorescence enhancement caused by TNP-ATP binding to the enzyme. The fluorophore is displaced monophasically from apoenzyme. However, ATP displaces TNP-ATP from the Mg2+-quenc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00442a034

    authors: Faller LD

    更新日期:1989-08-08 00:00:00

  • Inhibition of gene expression and cell proliferation by triple helix-forming oligonucleotides directed to the c-myc gene.

    abstract::Triple helix-forming oligonucleotides (TFOs) bind with high affinity and specificity to homopurine-homopyrimidine sequences in DNA and have been shown to inhibit transcription of target genes in various experimental systems. In the present study, we evaluated the ability of 3'-amino-modified phosphodiester TFOs direct...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992185w

    authors: Catapano CV,McGuffie EM,Pacheco D,Carbone GM

    更新日期:2000-05-02 00:00:00

  • DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: promoter-dependent differences in the thermodynamics and kinetics of binding.

    abstract::The equilibrium binding and association kinetics of the Saccharomyces cerevisiae TATA Binding Protein (TBP) to the E4 and Major Late promoters of adenovirus (TATATATA and TATAAAAG, respectively), have been directly compared by quantitative DNase I titration and quench-flow "footprinting". The equilibrium binding of TB...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981072u

    authors: Petri V,Hsieh M,Jamison E,Brenowitz M

    更新日期:1998-11-10 00:00:00

  • Thermodynamic consequences of bipartite immunity protein binding to the ribosomal ribonuclease colicin E3.

    abstract::Colicin E3 is a 60 kDa, multidomain protein antibiotic that targets its ribonuclease activity to an essential region of the 16S ribosomal RNA of Escherichia coli. To prevent suicide of the producing cell, synthesis of the toxin is accompanied by the production of a 10 kDa immunity protein (Im3) that binds strongly to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0273720

    authors: Walker D,Moore GR,James R,Kleanthous C

    更新日期:2003-04-15 00:00:00

  • tRNA discrimination at the binding step by a class II aminoacyl-tRNA synthetase.

    abstract::Aminoacyl-tRNA synthetases preserve the fidelity of decoding genetic information by accurately joining amino acids to their cognate transfer RNAs. Here, tRNA discrimination at the level of binding by Escherichia coli histidyl-tRNA synthetase is addressed by filter binding, analytical ultracentrifugation, and iodine fo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991182g

    authors: Bovee ML,Yan W,Sproat BS,Francklyn CS

    更新日期:1999-10-12 00:00:00

  • Mutational analysis of the "regulatory module" of hormone-sensitive lipase.

    abstract::Hormone-sensitive lipase (HSL) is a rate-limiting enzyme in lipolysis that displays broad substrate specificity. HSL function is regulated by reversible phosphorylation that occurs within a 150 aa "regulatory module" of the protein. The current studies used mutational analysis to dissect the contribution of the "regul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049206t

    authors: Wang J,Shen WJ,Patel S,Harada K,Kraemer FB

    更新日期:2005-02-15 00:00:00

  • The androgen receptor T877A mutant recruits LXXLL and FXXLF peptides differently than wild-type androgen receptor in a time-resolved fluorescence resonance energy transfer assay.

    abstract::The interactions of the ligand binding domain (LBD) of androgen receptor (AR) and the AR T877A mutant, found in prostate cancer, with peptides from coactivator and corepressor proteins or random phage display peptides were investigated using in vitro time-resolved fluorescence resonance energy transfer (TR-FRET). Inte...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061321b

    authors: Ozers MS,Marks BD,Gowda K,Kupcho KR,Ervin KM,De Rosier T,Qadir N,Eliason HC,Riddle SM,Shekhani MS

    更新日期:2007-01-23 00:00:00

  • Structural and thermodynamic basis of affinity in anti-dinitrophenyl antibody.

    abstract::The thermodynamic quantities of the anti-dinitrophenyl antibody-hapten interaction are reported for rabbit, goat, and guinea pig antibodies. Rabbit and goat antibodies had similar exothermic enthalpy changes for their reaction with 2,4-dinitrophenyl-L-lysine (-13.9 and -14.8 kcal/mol, respectively). The enthalpy chang...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00694a032

    authors: Halsey JF,Cebra JJ,Biltonen RL

    更新日期:1975-11-18 00:00:00

  • Resonance Raman studies of the flavin and iron-sulfur centers of milk xanthine oxidase.

    abstract::Resonance Raman spectroscopy has been used to study milk xanthine oxidase, an enzyme containing molybdenum, binuclear iron-sulfur clusters, and FAD as cofactors. The contribution of FAD dominates the resonance Raman spectrum at frequencies above 500 cm-1. As expected, no bands assignable to FAD are observed in deflavo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00332a026

    authors: Willis LJ,Loehr TM

    更新日期:1985-05-21 00:00:00

  • Transcription termination factor rho: the site of bicyclomycin inhibition in Escherichia coli.

    abstract::Bicyclomycin is a novel, commercially important antibiotic. Information concerning the site of bicyclomycin inhibition in Escherichia coli has been obtained by the production of bicyclomycin resistant mutants by UV irradiation. Selection by growth in the presence of bicyclomycin of a plasmid clone library generated fr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00065a007

    authors: Zwiefka A,Kohn H,Widger WR

    更新日期:1993-04-13 00:00:00