A 1-Mb physical map and PAC contig of the imprinted domain in 11p15.5 that contains TAPA1 and the BWSCR1/WT2 region.

Abstract:

:We have constructed a 1-Mb contig in human chromosomal band 11p15.5, a region implicated in the etiology of several embryonal tumors, including Wilms tumor, and in Beckwith-Wiedemann syndrome. Cosmid, P1, PAC, and BAC clones were characterized by NotI/SalI digestion and hybridized to a variety of probes to generate a detailed physical map that extends from D11S517 to L23MRP. Included in the map are the CARS, NAP2, p57/KIP2, KVLQT1, ASCL2, TH, INS, IGF2, H19, and L23MRP genes as well as end probes isolated from PACs. The TAPA1 gene, whose protein product can transmit an antiproliferative signal, was also localized in the contig. However, Northern blot analysis demonstrated that its expression did not correlate with tumorigenicity in G401 Wilms tumor hybrids, suggesting that TAPA1 is not responsible for the tumor suppression associated with 11p15.5. Genomic clones were used as probes in FISH analysis to map the breakpoints from three Beckwith-Wiedemann syndrome patients and a rhabdoid tumor. Interestingly, each of the breakpoints disrupts the KVLQT1 gene, which is spread over a 400-kb region of the contig. Since 11p15.5 contains several genes with imprinted expression and one or more tumor suppressor genes, our contig and map provide a framework for characterizing this intriguing genetic environment.

journal_name

Genomics

journal_title

Genomics

authors

Reid LH,Davies C,Cooper PR,Crider-Miller SJ,Sait SN,Nowak NJ,Evans G,Stanbridge EJ,deJong P,Shows TB,Weissman BE,Higgins MJ

doi

10.1006/geno.1997.4826

subject

Has Abstract

pub_date

1997-08-01 00:00:00

pages

366-75

issue

3

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(97)94826-6

journal_volume

43

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Specific repertoire of olfactory receptor genes in the male germ cells of several mammalian species.

    abstract::Olfactory receptors constitute the largest family among G protein-coupled receptors, with up to 1000 members expected. We have previously shown that genes belonging to this family were expressed in the male germ line from both dog and human. We have subsequently demonstrated the presence of one of the corresponding ol...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.4490

    authors: Vanderhaeghen P,Schurmans S,Vassart G,Parmentier M

    更新日期:1997-02-01 00:00:00

  • A first comparative map of copy number variations in the sheep genome.

    abstract::We carried out a cross species cattle-sheep array comparative genome hybridization experiment to identify copy number variations (CNVs) in the sheep genome analysing ewes of Italian dairy or dual-purpose breeds (Bagnolese, Comisana, Laticauda, Massese, Sarda, and Valle del Belice) using a tiling oligonucleotide array ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2010.11.005

    authors: Fontanesi L,Beretti F,Martelli PL,Colombo M,Dall'olio S,Occidente M,Portolano B,Casadio R,Matassino D,Russo V

    更新日期:2011-03-01 00:00:00

  • Disequilibrium mapping: composite likelihood for pairwise disequilibrium.

    abstract::The pattern of linkage disequilibrium between a disease locus and a set of marker loci has been shown to be a useful tool for geneticists searching for disease genes. Several methods have been advanced to utilize the pairwise disequilibrium between the disease locus and each of a set of marker loci. However, none of t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0419

    authors: Devlin B,Risch N,Roeder K

    更新日期:1996-08-15 00:00:00

  • Transcriptome profiling and dimorphic expression of sex-related genes in fifth-instar nymphs of Sogatella furcifera, an important rice pest.

    abstract::Sogatella furcifera is an important rice pest. In order to understand the molecular basis of the sex determination in this pest, we performed de novo transcriptome sequencing of six cDNA libraries (three biological replicates) of female and male fifth-instar nymphs. Total 65,199 unigenes were obtained, with an average...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.06.024

    authors: Lin J,He J,Liang A,Wang F

    更新日期:2020-03-01 00:00:00

  • Chromosomal localization of the gastric and brain receptors for cholecystokinin (CCKAR and CCKBR) in human and mouse.

    abstract::Receptors for cholcystokinin (CCK) can be pharmacologically classified into at least two distinct subtypes, CCKAR and CCKBR. In an effort to determine whether the CCKA and CCKB receptors may be associated with certain CNS or gastrointestinal diseases, we have localized and compared the human and mouse chromosomal loci...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80018-h

    authors: Huppi K,Siwarski D,Pisegna JR,Wank S

    更新日期:1995-02-10 00:00:00

  • Mapping of genetic modulators of natural resistance to infection with Salmonella typhimurium in wild-derived mice.

    abstract::Despite antibiotic therapy and vaccination programs, microbial diseases continue to be the leading cause of morbidity and mortality worldwide. The genetic basis of the host response to infection is complex, and its understanding has been facilitated through the study of mouse models of human infectious diseases. Genet...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.5116

    authors: Sebastiani G,Olien L,Gauthier S,Skamene E,Morgan K,Gros P,Malo D

    更新日期:1998-01-15 00:00:00

  • Identification of small non-coding RNAs in the planarian Dugesia japonica via deep sequencing.

    abstract::Freshwater planarian flatworm possesses an extraordinary ability to regenerate lost body parts after amputation; it is perfect organism model in regeneration and stem cell biology. Recently, small RNAs have been an increasing concern and studied in many aspects, including regeneration and stem cell biology, among othe...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2012.03.001

    authors: Qin YF,Zhao JM,Bao ZX,Zhu ZY,Mai J,Huang YB,Li JB,Chen G,Lu P,Chen SJ,Su LL,Fang HM,Lu JK,Zhang YZ,Zhang ST

    更新日期:2012-05-01 00:00:00

  • MSG1 (melanocyte-specific gene 1): mapping to chromosome Xq13.1, genomic organization, and promoter analysis.

    abstract::MSG1 (melanocyte-specific gene 1) is a recently isolated gene predominantly expressed in cultured normal melanocytes and pigmented melanoma cells. MSG1 encodes a 27-kDa nuclear protein that has strong intrinsic transcriptional transactivating activity. In this report, the human MSG1 gene was mapped to chromosome Xq13....

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5383

    authors: Fenner MH,Parrish JE,Boyd Y,Reed V,MacDonald M,Nelson DL,Isselbacher KJ,Shioda T

    更新日期:1998-08-01 00:00:00

  • Identification of eight genes encoding chemokine-like factor superfamily members 1-8 (CKLFSF1-8) by in silico cloning and experimental validation.

    abstract::TM4SF11 is only 102 kb from the chemokine gene cluster composed of SCYA22, SCYD1, and SCYA17 on chromosome 16q13. CKLF maps on chromosome 16q22. CKLFs have some characteristics associated with the CCL22/MDC, CX3CL1/fractalkine, CCL17/TARC, and TM4SF proteins. Bioinformatics based on CKLF2 cDNA and protein sequences in...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(03)00095-8

    authors: Han W,Ding P,Xu M,Wang L,Rui M,Shi S,Liu Y,Zheng Y,Chen Y,Yang T,Ma D

    更新日期:2003-06-01 00:00:00

  • Transcriptional analysis of a novel cluster of LY-6 family members in the human and mouse major histocompatibility complex: five genes with many splice forms.

    abstract::Lymphocyte antigen-6 (LY-6) superfamily members are cysteine-rich, generally GPI-anchored cell surface proteins, which have definite or putative immune related roles. A cluster of five potential LY-6 superfamily members is located in the human and mouse major histocompatibility complex class III region. Comparative an...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2002.6794

    authors: Mallya M,Campbell RD,Aguado B

    更新日期:2002-07-01 00:00:00

  • Construction and characterization of an eightfold redundant dog genomic bacterial artificial chromosome library.

    abstract::A large insert canine genomic bacterial artificial chromosome (BAC) library was built from a Doberman pinscher. Approximately 166,000 clones were gridded on nine high-density hybridization filters. Insert analysis of randomly selected clones indicated a mean insert size of 155 kb and predicted 8.1 coverage of the cani...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5772

    authors: Li R,Mignot E,Faraco J,Kadotani H,Cantanese J,Zhao B,Lin X,Hinton L,Ostrander EA,Patterson DF,de Jong PJ

    更新日期:1999-05-15 00:00:00

  • A PstI polymorphism for the human erythrocyte surface protein band 3 (EPB3) demonstrates close linkage of EPB3 to the nerve growth factor receptor.

    abstract::Erythrocyte surface protein band 3 (EPB3) plays an important role in CO2 transport in the blood. We have isolated a recombinant lambda bacteriophage that contains coding sequence for the human gene. Sequence analysis demonstrated that the human insert contains a portion of exon 13. A 1.1-kb BamHI fragment revealed a t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90034-7

    authors: Stewart EA,Kopito R,Bowcock AM

    更新日期:1989-10-01 00:00:00

  • A physical and transcript map of the MCOLN1 gene region on human chromosome 19p13.3-p13.2.

    abstract::Mutations in MCOLN1 have been found to cause mucolipidosis type IV (MLIV; MIM 252650), a rare autosomal recessive lysosomal storage disorder found primarily in the Ashkenazi Jewish population. As a part of the successful cloning of MCOLN1, we constructed a 1.4-Mb physical map containing 14 BACs and 4 cosmids that enco...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6526

    authors: Acierno JS Jr,Kennedy JC,Falardeau JL,Leyne M,Bromley MC,Colman MW,Sun M,Bove C,Ashworth LK,Chadwick LH,Schiripo T,Ma S,Goldin E,Schiffmann R,Slaugenhaupt SA

    更新日期:2001-04-15 00:00:00

  • Identification of six putative human transporters with structural similarity to the drug transporter SLC22 family.

    abstract::The solute carrier family 22 (SLC22) is a large family of organic cation and anion transporters. These are transmembrane proteins expressed predominantly in kidneys and liver and mediate the uptake and excretion of environmental toxins, endogenous substances, and drugs from the body. Through a comprehensive database s...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2007.03.017

    authors: Jacobsson JA,Haitina T,Lindblom J,Fredriksson R

    更新日期:2007-11-01 00:00:00

  • A human mitochondrial DNA standard reference material for quality control in forensic identification, medical diagnosis, and mutation detection.

    abstract::A human mitochondrial DNA (mtDNA) standard reference material (SRM 2392) will provide quality control when mtDNA is sequenced for forensic identifications, medical diagnosis, or mutation detection. SRM 2392 includes DNA from two lymphoblast cell cultures (CHR and 9947A) and cloned DNA from the CHR HV1 region, which co...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5513

    authors: Levin BC,Cheng H,Reeder DJ

    更新日期:1999-01-15 00:00:00

  • Molecular cloning and characterization of NEU4, the fourth member of the human sialidase gene family.

    abstract::Several mammalian sialidases have been cloned so far and here we describe the identification and expression of a new member of the human sialidase gene family. The NEU4 gene, identified by searching sequence databases for entries showing homologies to the human cytosolic sialidase NEU2, maps in 2q37 and encodes a 484-...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2003.08.019

    authors: Monti E,Bassi MT,Bresciani R,Civini S,Croci GL,Papini N,Riboni M,Zanchetti G,Ballabio A,Preti A,Tettamanti G,Venerando B,Borsani G

    更新日期:2004-03-01 00:00:00

  • Structure of the gene encoding the murine protein kinase CK2 beta subunit.

    abstract::The mouse protein kinase CK2 beta subunit gene (Csnk2b) is composed of seven exons contained within 7874 bp. The exon and intron lengths extend from 76 to 321 and 111 to 1272 bp, respectively. The lengths of the murine coding exons correspond exactly to the lengths of the exons in the human CK2 beta gene. Both genes c...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1239

    authors: Boldyreff B,Issinger OG

    更新日期:1995-09-01 00:00:00

  • Haplotype analysis of the apolipoprotein gene cluster on human chromosome 11.

    abstract::Members of the apolipoprotein gene cluster (APOA1/C3/A4/A5) on human chromosome 11q23 play an important role in lipid metabolism. Polymorphisms in both APOA5 and APOC3 are strongly associated with plasma triglyceride concentrations. The close genomic locations of these two genes as well as their functional similarity ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2003.11.016

    authors: Olivier M,Wang X,Cole R,Gau B,Kim J,Rubin EM,Pennacchio LA

    更新日期:2004-05-01 00:00:00

  • A map of the distal region of the long arm of human chromosome 21 constructed by radiation hybrid mapping and pulsed-field gel electrophoresis.

    abstract::We have used radiation hybrid (RH) mapping and pulsed-field gel electrophoresis (PFGE) to determine the order and positions of 28 DNA markers from the distal region of the long arm of human chromosome 21. The maps generated by these two methods are in good agreement. This study, combined with that of D. R. Cox et al. ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90216-2

    authors: Burmeister M,Kim S,Price ER,de Lange T,Tantravahi U,Myers RM,Cox DR

    更新日期:1991-01-01 00:00:00

  • Two members of the S-lac lectin gene family, LGALS1 and LGALS2, reside in close proximity on human chromosome 22q12-q13.

    abstract::S-lac lectins are a family of soluble lactose-binding proteins thought to function in the control of cell growth. We now report the chromosomal mapping of two members of the family, termed L-14-I and L-14-II, to the q12-q13 region of human chromosome 22, suggesting the possibility of a cluster of genes for lactose-bin...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1078

    authors: Mehrabian M,Gitt MA,Sparkes RS,Leffler H,Barondes SH,Lusis AJ

    更新日期:1993-02-01 00:00:00

  • Genome-wide expression profiling of the transcriptomes of four Paulownia tomentosa accessions in response to drought.

    abstract::Paulownia tomentosa is an important foundation forest tree species in semiarid areas. The lack of genetic information hinders research into the mechanisms involved in its response to abiotic stresses. Here, short-read sequencing technology (Illumina) was used to de novo assemble the transcriptome on P. tomentosa. A to...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2014.08.008

    authors: Dong Y,Fan G,Deng M,Xu E,Zhao Z

    更新日期:2014-10-01 00:00:00

  • Functional characterization of the human PAX3 gene regulatory region.

    abstract::Spatiotemporal expression of the PAX3 gene is tightly regulated during development. We have isolated and sequenced the 5'-flanking regulatory region of human PAX3. Primer extension and ribonuclease protection mapping revealed that transcription is initiated from a single start site downstream of a TATA-like motif in h...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5711

    authors: Okladnova O,Syagailo YV,Tranitz M,Riederer P,Stöber G,Mössner R,Lesch KP

    更新日期:1999-04-01 00:00:00

  • Human EVI9, a homologue of the mouse myeloid leukemia gene, is expressed in the hematopoietic progenitors and down-regulated during myeloid differentiation of HL60 cells.

    abstract::Evi9, a common site of retroviral integration in BXH2 murine myeloid leukemias, encodes a C2H2 zinc finger protein and is overexpressed in these leukemic cells. To investigate a possible role of EVI9 in the human hematopoietic system, we isolated the cDNA clone of the human homologue. Human EVI9, located on the chromo...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6385

    authors: Saiki Y,Yamazaki Y,Yoshida M,Katoh O,Nakamura T

    更新日期:2000-12-15 00:00:00

  • Sensitivity and selectivity in protein similarity searches: a comparison of Smith-Waterman in hardware to BLAST and FASTA.

    abstract::To predict the functions of a possible protein product of any new or uncharacterized DNA sequence, it is important first to detect all significant similarities between the encoded amino acid sequence and any accumulated protein sequence data. We have implemented a set of queries and database sequences and proceeded to...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0614

    authors: Shpaer EG,Robinson M,Yee D,Candlin JD,Mines R,Hunkapiller T

    更新日期:1996-12-01 00:00:00

  • PE-1, a novel ETS oncogene family member, localizes to chromosome 1q21-q23.

    abstract::The v-ets oncogene family shares a conserved peptide motif called the ETS domain that mediates sequence-specific DNA binding. This motif is unique among transcription factor families. Using partially degenerate oligonucleotides from conserved regions of the ETS domain and the polymerase chain reaction, we isolated a n...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1169

    authors: Klemsz M,Hromas R,Raskind W,Bruno E,Hoffman R

    更新日期:1994-03-15 00:00:00

  • MLL2: A new mammalian member of the trx/MLL family of genes.

    abstract::We have identified a gene at chromosome band 19q13.1, which is closely related to MLL. MLL is located in a region of chromosome 11q23 that has partial synteny with chromosome 19q. We have named this gene at 19q13.1, MLL2. MLL2 encodes a protein that exhibits a high level of similarity to MLL over several important pro...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5860

    authors: FitzGerald KT,Diaz MO

    更新日期:1999-07-15 00:00:00

  • Function and characterization of the promoter region of perilipin 1 (PLIN1): Roles of E2F1, PLAG1, C/EBPβ, and SMAD3 in bovine adipocytes.

    abstract::Perilipin 1 (PLIN1) protein, also known as lipid droplet-associated protein, is encoded by the PLIN1 gene and is able to anchor itself to the membranes of lipid droplets. The phosphorylation of PLIN1 is critical for the mobilization of fat in adipose tissue and plays an important role in regulating lipolysis and lipid...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.01.012

    authors: Shijun L,Khan R,Raza SHA,Jieyun H,Chugang M,Kaster N,Gong C,Chunping Z,Schreurs NM,Linsen Z

    更新日期:2020-05-01 00:00:00

  • Evidence that the SRY protein is encoded by a single exon on the human Y chromosome.

    abstract::To facilitate studies of the SRY gene, a 4741-bp portion of the sex-determining region of the human Y chromosome was sequenced and characterized. Two RNAs were found to hybridize to this genomic segment, one transcript deriving from SRY and the second cross-hybridizing to a pseudogene located 2.5 kb 5' of the SRY open...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1395

    authors: Behlke MA,Bogan JS,Beer-Romero P,Page DC

    更新日期:1993-09-01 00:00:00

  • Quantitative analysis of wobble splicing indicates that it is not tissue specific.

    abstract::Alternative splicing is an important mechanism mediating the function of genes in multicellular organisms. Recently, we discovered a new splicing-junction wobble mechanism that generates subtle alterations in mRNA by randomly selecting tandem 5' and 3' splicing-junction sites. Here we developed a sensitive approach to...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.07.004

    authors: Tsai KW,Lin WC

    更新日期:2006-12-01 00:00:00

  • Genetic manipulations in crops: Challenges and opportunities.

    abstract::An alarming increase in the human population necessitates doubling the world food production in the next few decades. Although a number of possible biotechnological measures are under consideration, central to these efforts is the development of transgenic crops to produce more food, and the traits with which plants c...

    journal_title:Genomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.ygeno.2017.07.007

    authors: Ahmad N,Mukhtar Z

    更新日期:2017-10-01 00:00:00