Further characterization of the spin coupling observed in oxidized hydrogenase from Chromatium vinosum. A Mössbauer and multifrequency EPR study.

Abstract:

:Hydrogenase from Chromatium vinosum contains 1 Ni, 11-12 Fe, and ca. 9 sulfides. EPR and Mössbauer studies of the enzyme prepared in four different oxidation states show that the enzyme contains two Fe4S4 and one Fe3S4 cluster. In the oxidized (2+) state, the Mössbauer parameters of the two Fe4S4 clusters are typical for this cluster type. Upon reduction, however, these clusters do not exhibit the familiar g = 1.94 signal. The unusual nature of the reduced clusters is also borne out by the Mössbauer spectra which exhibit fairly small magnetic hyperfine interactions similar to those of centers I and II of the Desulfovibrio gigas enzyme. The Mössbauer spectra of the Fe3S4 cluster in the oxidized (1+) and reduced states are typical for this cluster type. The C. vinosum hydrogenase undergoes a reversible redox reaction at Em = +150 mV (vs NHE). Above +150 mV the EPR spectra exhibit signals (previously called signals 2 and 4) that reflect a weak interaction between Ni(III) and an Fe-containing moiety. By clamping the Ni in the diamagnetic Ni(II).CO form, we have discovered that signal 2 (X-band resonances at g = 2.01, 1.974, and 1.963) involves the Fe3S4 cluster and an as yet unidentified paramagnetic moiety. The "coupled" system exhibits magnetic hyperfine interactions quite different from those of the uncoupled [Fe3S4]1+ cluster. We have not yet been able to assign a spin to the coupled state but some of the features of the state are reminiscent of an S = 1 system. The Mössbauer data suggest, but do not prove, that an extra Fe site may be present that shuttles between low-spin Fe(III) and low-spin Fe(II) with Em = +150 mV. The Fe(III) may be located between the Ni(III) and the Fe3S4 cluster enabling it to mediate the interaction between the cluster and the Ni site. In this picture, the Fe(III) site is part of the coupled state that gives rise to signal 2. Other possibilities for signal 2 involve a ligand-based oxidation of the [Fe3S4]1+ cluster or generation of a nearby radical.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Surerus KK,Chen M,van der Zwaan JW,Rusnak FM,Kolk M,Duin EC,Albracht SP,Münck E

doi

10.1021/bi00182a029

subject

Has Abstract

pub_date

1994-04-26 00:00:00

pages

4980-93

issue

16

eissn

0006-2960

issn

1520-4995

journal_volume

33

pub_type

杂志文章
  • Kinetics of cytochrome b oxidation in antimycin-treated submitochondrial particles.

    abstract::It has been shown that in bovine heart submitochondrial particles, antimycin and 2-heptyl-4-hydroxyquinoline N-oxide (HQNO) inhibit the oxidation of NADH, succinate, and reduced ubiquinone incompletely, the uninhibited rate being about 20-40 nmol of substrate oxidized min-1 (mg of protein)-1. By contrast, rotenone, cy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00268a045

    authors: Hatefi Y,Yagi T

    更新日期:1982-12-07 00:00:00

  • Crystal structure of ribonuclease T1 carboxymethylated at Glu58 in complex with 2'-GMP.

    abstract::The carboxymethylation of RNase T1 at the gamma-carboxyl group of Glu58 leads to a complete loss of the enzymatic activity while it retains substrate-binding ability. Accompanying the carboxymethylation, RNase T1 undergoes a remarkable thermal stabilization of 9 degrees C in the melting temperature (Tm). In order to c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960493d

    authors: Ishikawa K,Suzuki E,Tanokura M,Takahashi K

    更新日期:1996-06-25 00:00:00

  • Phenotypic regulation of the sphingosine 1-phosphate receptor miles apart by G protein-coupled receptor kinase 2.

    abstract::The evolutionarily conserved DRY motif at the end of the third helix of rhodopsin-like, class-A G protein-coupled receptors (GPCRs) is a major regulator of receptor stability, signaling activity, and β-arrestin-mediated internalization. Substitution of the DRY arginine with histidine in the human vasopressin receptor ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501061h

    authors: Burczyk M,Burkhalter MD,Blätte T,Matysik S,Caron MG,Barak LS,Philipp M

    更新日期:2015-01-27 00:00:00

  • A diferrous-dinitrosyl intermediate in the N2O-generating pathway of a deflavinated flavo-diiron protein.

    abstract::Flavo-diiron proteins (FDPs) function as anaerobic nitric oxide scavengers in some microorganisms, catalyzing reduction of nitric to nitrous oxide. The FDP from Thermotoga maritima can be prepared in a deflavinated form with an intact diferric site (deflavo-FDP). Hayashi et al. [(2010) Biochemistry 49, 7040-7049] repo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500836z

    authors: Caranto JD,Weitz A,Giri N,Hendrich MP,Kurtz DM Jr

    更新日期:2014-09-09 00:00:00

  • 3 beta-Hydroxy-5 beta-steroid dehydrogenase activity of human liver alcohol dehydrogenase is specific to gamma-subunits.

    abstract::Human liver alcohol dehydrogenase [alcohol:NAD+ oxidoreductase, EC 1.1.1.1 (ADH)] catalyzes the stereospecific oxidation of different 3 beta-hydroxy-5 beta-steroids with ranges of Km from 46 to 320 microM and values of kcat from 7.0 to 72 min-1, pH 8.5. Only the class I isozymes containing gamma-subunits, gamma 1 gamm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00412a013

    authors: McEvily AJ,Holmquist B,Auld DS,Vallee BL

    更新日期:1988-06-14 00:00:00

  • Rapid reaction kinetics of proline dehydrogenase in the multifunctional proline utilization A protein.

    abstract::The multifunctional proline utilization A (PutA) flavoenzyme from Escherichia coli catalyzes the oxidation of proline to glutamate in two reaction steps using separate proline dehydrogenase (PRODH) and Δ(1)-pyrroline-5-carboxylate (P5C) dehydrogenase domains. Here, the kinetic mechanism of PRODH in PutA is studied by ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201603f

    authors: Moxley MA,Becker DF

    更新日期:2012-01-10 00:00:00

  • Strongly altered receptor binding properties in PP and NPY chimeras are accompanied by changes in structure and membrane binding.

    abstract::Neuropeptide Y (NPY) and the pancreatic polypeptide (PP) are members of the neuropeptide Y family of hormones. They bind to the Y receptors with very different affinities: Whereas PP is highly selective for the Y(4) receptor, NPY displays highest affinites for Y(1), Y(2), and Y(5) receptor subtypes. Introducing the NP...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0501232

    authors: Lerch M,Kamimori H,Folkers G,Aguilar MI,Beck-Sickinger AG,Zerbe O

    更新日期:2005-06-28 00:00:00

  • Notomastus lobatus chloroperoxidase and Amphitrite ornata dehaloperoxidase both contain histidine as their proximal heme iron ligand.

    abstract::Two novel heme-containing peroxidases, one able to incorporate halogens into aromatic substrates and the other able to remove them, have recently been isolated from marine sources and initially characterized by Chen et al. [(1991) J. Biol. Chem. 266, 23909-23915; (1996) J. Biol. Chem. 271, 4609-4612]. The haloperoxida...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9621371

    authors: Roach MP,Chen YP,Woodin SA,Lincoln DE,Lovell CR,Dawson JH

    更新日期:1997-02-25 00:00:00

  • Role of the heme propionates in the interaction of heme with apomyoglobin and apocytochrome b5.

    abstract::The heme propionate groups of both myoglobin (Mb) and cytochrome b5 form hydrogen bonds with nearby surface amino acids residues that are believed to stabilize the heme-protein complex. To evaluate the magnitude of this stabilization, the kinetics of heme dissociation from variants of horse heart Mb and cytochrome b5 ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961385u

    authors: Hunter CL,Lloyd E,Eltis LD,Rafferty SP,Lee H,Smith M,Mauk AG

    更新日期:1997-02-04 00:00:00

  • Comparison of the effects of tropomyosin and troponin-tropomyosin on the binding of myosin subfragment 1 to actin.

    abstract::The effect of tropomyosin alone on the binding of myosin subfragment 1 (S-1) to actin was compared to that of troponin-tropomyosin, with and without Ca2+. Over a range of ionic strength and with different ligands (adenyl-5'-yl imidodiphosphate, pyrophosphate, and adenosine 5'-diphosphate), tropomyosin confers slight c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00280a027

    authors: Williams DL Jr,Greene LE

    更新日期:1983-05-24 00:00:00

  • A designed protein with packing between left-handed and right-handed helices.

    abstract::A common motif in protein structures is the assembly of alpha-helices. Natural alpha-helical assemblies, such as helical bundles and coiled coils, consist of multiple right-handed alpha-helices. Here we design a protein complex containing both left-handed and right-handed helices, with peptides of D- and L-amino acids...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010725v

    authors: Sia SK,Kim PS

    更新日期:2001-07-31 00:00:00

  • Mechanism of translocation and kinetics of DNA unwinding by the helicase RecG.

    abstract::RecG is a DNA helicase involved in the repair of damage at a replication fork and catalyzes the reversal of the fork to a point beyond the damage in the template strand. It unwinds duplex DNA in reactions that are coupled to ATP hydrolysis. The kinetic mechanism of duplex DNA unwinding by RecG was analyzed using a qua...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0512851

    authors: Martinez-Senac MM,Webb MR

    更新日期:2005-12-27 00:00:00

  • Oligomeric state and mode of self-association of Thermotoga maritima ribosomal stalk protein L12 in solution.

    abstract::The "stalk" of the prokaryotic 50S ribosomal subunit is comprised of four copies of the protein L7/L12. In Escherichia coli, L7/L12 is a dimeric protein at micromolar concentrations, which is able to undergo rapid subunit exchange. A recent structural study indicated a tetrameric arrangement of the L12 proteins isolat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048015n

    authors: Moens PD,Wahl MC,Jameson DM

    更新日期:2005-03-08 00:00:00

  • Evidence for functional and structural multiplicity of pregnenolone-16 alpha-carbonitrile-inducible cytochrome P-450 isozymes in rat liver microsomes.

    abstract::Administration of pregnenolone-16 alpha-carbonitrile (PCN) to adult female rats caused a 2-fold increase in total liver microsomal cytochrome P-450 along with 5-7-fold increases in four in vitro monooxygenase activities considered diagnostic for the major PCN-inducible cytochrome P-450 isozyme. However, upon administr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00387a022

    authors: Graves PE,Kaminsky LS,Halpert J

    更新日期:1987-06-30 00:00:00

  • Phase transitions of the purple membranes of Halobacterium halobium.

    abstract::Purple membranes of Halobacterium halobium were studied by differential scanning calorimetry. No transition was detected at temperatures below 70 degrees C. A small endothermic transition was seen at about 80 degrees C and a larger one at 100 degrees C. The larger transition is the irreversible denaturation of bacteri...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00598a026

    authors: Jackson MB,Sturtevant JM

    更新日期:1978-03-07 00:00:00

  • Identification of Tyr413 as an active site residue in the flavoprotein tryptophan 2-monooxygenase and analysis of its contribution to catalysis.

    abstract::The flavoenzyme tryptophan 2-monooxygenase catalyzes the oxidation of tryptophan to indoleacetamide, carbon dioxide, and water. The enzyme is a homologue of l-amino acid oxidase. In the structure of l-amino acid oxidase complexed with aminobenzoate, Tyr372 hydrogen bonds with the carboxylate of the inhibitor in the ac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035300i

    authors: Sobrado P,Fitzpatrick PF

    更新日期:2003-12-02 00:00:00

  • Copper- and silver-substituted yeast metallothioneins: sequential 1H NMR assignments reflecting conformational heterogeneity at the C terminus.

    abstract::Complete 1H NMR sequential assignments have been made for copper(I)- and silver (I)-substituted metallothionein (MT) from Saccharomyces cerevisiae using standard 2D 1H NMR methods. The fingerprint region of the COSY spectrum of both metalloproteins shows a doubling of a few backbone proton resonances from residue K41 ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00077a032

    authors: Narula SS,Winge DR,Armitage IM

    更新日期:1993-07-06 00:00:00

  • Structure of an RNA hairpin loop with a 5'-CGUUUCG-3' loop motif by heteronuclear NMR spectroscopy and distance geometry.

    abstract::Structural features of a 19-nucleotide RNA hairpin loop (5'-GGCGUACGUUUCGUACGCC-3'), a loop motif which occurs in eukaryotic 18S rRNA, have been derived using multidimensional heteronuclear NMR spectroscopy in combination with local conformational analysis and torsion angle distance geometry followed by restrained ene...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971207g

    authors: Sich C,Ohlenschläger O,Ramachandran R,Görlach M,Brown LR

    更新日期:1997-11-18 00:00:00

  • Pyruvate dehydrogenase kinase isoform 2 activity limited and further inhibited by slowing down the rate of dissociation of ADP.

    abstract::Pyruvate dehydrogenase kinase 2 (PDK2) activity is enhanced by the dihydrolipoyl acetyltransferase core (E2 60mer) that binds PDK2 and a large number of its pyruvate dehydrogenase (E1) substrate. With E2-activated PDK2, K(+) at approximately 90 mM and Cl(-) at approximately 60 mM decreased the K(m) of PDK2 for ATP and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049488x

    authors: Bao H,Kasten SA,Yan X,Roche TE

    更新日期:2004-10-26 00:00:00

  • Translocase-bound SecA is largely shielded from the phospholipid acyl chains.

    abstract::Protein translocation in Escherichia coli is mediated by the SecA ATPase bound to the SecYEG membrane protein complex. SecA translocation ATPase activity as well as protein translocation is dependent on the presence of negatively charged lipids. By using a phospholipid with an acyl chain linked photoactivatable group,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9809021

    authors: van Voorst F,van der Does C,Brunner J,Driessen AJ,de Kruijff B

    更新日期:1998-09-01 00:00:00

  • The active site structure of Thalassiosira weissflogii carbonic anhydrase 1.

    abstract::X-ray absorption spectroscopy at the Zn K-edge indicates that the active site of the marine diatom Thalassiosira weissflogii carbonic anhydrase is strikingly similar to that of mammalian alpha-carbonic anhydrase enzymes. The zinc has three histidine ligands and a single water at 1.98 A. This is quite different from th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001416s

    authors: Cox EH,McLendon GL,Morel FM,Lane TW,Prince RC,Pickering IJ,George GN

    更新日期:2000-10-10 00:00:00

  • Photo-cross-linking studies suggest a model for the architecture of an active human immunodeficiency virus type 1 integrase-DNA complex.

    abstract::The virally encoded integrase protein carries out retroviral integration, which requires specific interactions with the two ends of the viral DNA, and also with host DNA that is the target of integration. We attached a photo-cross-linking agent to specific viral and target DNA sites to identify regions of the integras...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972949c

    authors: Heuer TS,Brown PO

    更新日期:1998-05-12 00:00:00

  • Microsomal hydroxylation of specifically deuterated monosubstituted benzenes. Evidence for direct aromatic hydroxylation.

    abstract::The aromatic hydroxylation of six pairs of selectively deuterated monosubstituted benzenes was investigated with rat liver microsomes of various induction states. The substrates studied included 3,5-D2C6H3X (1a-6a) and 2,4,6-D3C6H2X (1b-6b), where X = Br, CN, NO2, OCH3, CH3, or Ph, respectively. The deuterium content ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00308a031

    authors: Hanzlik RP,Hogberg K,Judson CM

    更新日期:1984-06-19 00:00:00

  • Dependence of 4'-(hydroxymethyl)-4,5',8-trimethylpsoralen photoaddition on the conformation of ribonucleic acid.

    abstract::The photoaddition of 4'-(hydroxymethyl)-4,5',8-trimethylpsoralen (HMT) to different conformational states of RNA was studied. Poly(U), poly(A,U) (random copolymer), poly(A-U) (alternating copolymer), poly(A) . poly(U) (double stranded), and poly(U) . poly(A) . poly(U) (triple stranded) were reacted with HMT at differe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00535a040

    authors: Thompson JF,Bachellerie JP,Hall K,Hearst JE

    更新日期:1982-03-16 00:00:00

  • Carboxylases in de novo purine biosynthesis. Characterization of the Gallus gallus bifunctional enzyme.

    abstract::Two successive steps in de novo purine biosynthesis are catalyzed by the enzymes 5-aminoimidazole ribonucleotide (AIR) carboxylase and 4-[(N-succinylamino)carbonyl]-5-aminoimidazole ribonucleotide (SAICAR) synthetase. Amino acid sequence alignments of the proteins from various sources suggested that several unusual di...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00205a030

    authors: Firestine SM,Davisson VJ

    更新日期:1994-10-04 00:00:00

  • The role of 2'-hydroxyl groups in an RNA-protein interaction.

    abstract::The role of the 2'-hydroxyl group in RNA--protein interaction has been investigated using MS2 coat protein and its hairpin RNA operator as a model system. Derivatives of the MS2 translational operator were prepared where individual riboses were replaced by deoxyribose and their binding affinities to MS2 coat protein w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00038a033

    authors: Baidya N,Uhlenbeck OC

    更新日期:1995-09-26 00:00:00

  • Dynamics of Aromatic Side Chains in the Active Site of FKBP12.

    abstract::FKBP12, a small human enzyme, aids protein folding by catalyzing cis-trans isomerization of peptidyl-prolyl bonds, and is involved in cell signaling pathways, calcium regulation, and the immune response. The underlying molecular mechanisms are not fully understood, but it is well-known that aromatic residues in the ac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01157

    authors: Weininger U,Modig K,Geitner AJ,Schmidpeter PA,Koch JR,Akke M

    更新日期:2017-01-10 00:00:00

  • Replication of antibiotic resistance plasmid R6K DNA in vitro.

    abstract::A soluble extract prepared from cells of an Escherichia coli strain carrying the antibiotic resistance plasmid R6K is capable of carrying out the complete process of R6K DNA replication. DNA synthesis in vitro is dependent on the four deoxyribo- and ribonucleotide triphosphates and is sensitive to rifampin and strepto...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00606a017

    authors: Inuzuka M,Helinski DR

    更新日期:1978-06-27 00:00:00

  • Sterol carrier protein-2 functions in phosphatidylinositol transfer and signaling.

    abstract::Over 20 years ago, it was reported that liver cytosol contains at least two distinct proteins that transfer phosphatidylinositol in vitro, phosphatidylinositol transfer protein (PITP) and a pH 5.1 supernatant fraction containing sterol carrier protein-2 (SCP-2). In contrast to PITP, there has been minimal progress on ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026904+

    authors: Schroeder F,Zhou M,Swaggerty CL,Atshaves BP,Petrescu AD,Storey SM,Martin GG,Huang H,Helmkamp GM,Ball JM

    更新日期:2003-03-25 00:00:00

  • Rapid deubiquitination of nucleosomal histones in human tumor cells caused by proteasome inhibitors and stress response inducers: effects on replication, transcription, translation, and the cellular stress response.

    abstract::The proteasome inhibitors, lactacystin and N-acetyl-leucyl-leucyl-norlucinal, caused a rapid and near-complete loss of approximately 22-23-kDa ubiquitinated nucleoproteins, which we have identified as monoubiquitinated nucleosomal histones H2A and H2B by immunological and two-dimensional electrophoretic techniques. In...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970998j

    authors: Mimnaugh EG,Chen HY,Davie JR,Celis JE,Neckers L

    更新日期:1997-11-25 00:00:00