Use of PCR-restriction enzyme pattern analysis and sequencing database for hsp65 gene-based identification of Nocardia species.

Abstract:

:Nocardia identification required laborious and time-consuming phenotypic and chemotaxonomic methods until molecular methods were developed in the mid-1990s. Here we reassessed the capacity of PCR-restriction enzyme pattern analysis (PRA) of the hsp65 gene to differentiate Nocardia species, including 36 new species. Our results confirm that hsp65 PRA must no longer be used for Nocardia species identification, as many species have the same restriction pattern. We then compared sequencing-based strategies using an hsp65 database and a 16S rRNA database and found that the hsp65 region contained sufficient polymorphisms for comprehensive Nocardia species identification.

journal_name

J Clin Microbiol

authors

Rodríguez-Nava V,Couble A,Devulder G,Flandrois JP,Boiron P,Laurent F

doi

10.1128/JCM.44.2.536-546.2006

subject

Has Abstract

pub_date

2006-02-01 00:00:00

pages

536-46

issue

2

eissn

0095-1137

issn

1098-660X

pii

44/2/536

journal_volume

44

pub_type

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