Effect of phospholipid oxidation products on transbilayer movement of phospholipids in single lamellar vesicles.

Abstract:

:Single lamellar phosphatidyl[methyl-2H]choline vesicles were incubated with an excess of unlabeled phosphatidylcholine vesicles or phosphatidylcholine-cholesterol vesicles containing 8 mol % glucuronosyldiglyceride. Incubation of the two vesicle populations was performed in the presence or absence of a purified phosphatidylcholine exchange protein. The negatively charged glycolipid donor vesicles could be completely removed by column chromatography on DEAE-Sephacel. Following incubation with exchange protein and subsequent fractionation, the -N(CD3)3 phosphatidylcholine acceptor vesicles exhibited a 61-73% enrichment of the unlabeled phosphatidylcholine in the outer monolayer. Upon incubation in an air atmosphere, no appreciable transbilayer movement of the outer monolayer -N(CH3)3 phosphatidylcholine was observed for at least 5 days. Between days 5 and 7, however, extensive transbilayer movement occurred, leading to an outer monolayer/inner monolayer phosphatidylcholine ratio of 2.1 on day 7. In phosphatidylcholine-6 mol % cholesterol vesicles treated similarly, the outside/inside ratio of the unlabeled phospholipid was 6.7, suggesting a much smaller percentage of transbilayer movement. The loss of transbilayer asymmetry which occurred during a 36-h period after day 5 could be estimated at the upper limit, t 1/2 approximately 7.3 h for phosphatidylcholine vesicles and t 1/2 approximately 53 h for phosphatidylcholine-cholesterol vesicles. The actual rates for transbilayer movement, however, were likely more rapid. Transbilayer movement occurred at a time period when oxidized phospholipid breakdown products had reached critical levels.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Shaw JM,Thompson TE

doi

10.1021/bi00534a017

subject

Has Abstract

pub_date

1982-03-02 00:00:00

pages

920-7

issue

5

eissn

0006-2960

issn

1520-4995

journal_volume

21

pub_type

杂志文章
  • Role of zinc binding in type A botulinum neurotoxin light chain's toxic structure.

    abstract::Clostridial neurotoxins are zinc endopeptidases, and each contains one Zn(2+)/molecule. To investigate the structural/functional role of Zn(2+) in botulinum neurotoxin light chain (the enzymatic subunit of the neurotoxin), the effect of the removal of zinc on protein folding and enzyme kinetics was investigated. The a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0007472

    authors: Li L,Singh BR

    更新日期:2000-08-29 00:00:00

  • Substitution of active site tyrosines with tryptophan alters the free energy for nucleotide flipping by human alkyladenine DNA glycosylase.

    abstract::Human alkyladenine DNA glycosylase (AAG) locates and excises a wide variety of structurally diverse alkylated and oxidized purine lesions from DNA to initiate the base excision repair pathway. Recognition of a base lesion requires flipping of the damaged nucleotide into a relatively open active site pocket between two...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101856a

    authors: Hendershot JM,Wolfe AE,O'Brien PJ

    更新日期:2011-03-22 00:00:00

  • Detection of RNA-Protein Interactions in Living Cells with SHAPE.

    abstract::SHAPE-MaP is unique among RNA structure probing strategies in that it both measures flexibility at single-nucleotide resolution and quantifies the uncertainties in these measurements. We report a straightforward analytical framework that incorporates these uncertainties to allow detection of RNA structural differences...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00977

    authors: Smola MJ,Calabrese JM,Weeks KM

    更新日期:2015-11-24 00:00:00

  • Electronic structure of the metal center in the Cd(2+), Zn(2+), and Cu(2+) substituted forms of KDO8P synthase: implications for catalysis.

    abstract::Aquifex aeolicus 3-deoxy-d-manno-octulosonate 8-phosphate synthase (KDO8PS) is active with a variety of different divalent metal ions bound in the active site. The Cd(2+), Zn(2+), and Cu(2+) substituted enzymes display similar values of k(cat) and similar dependence of K(m)(PEP) and K(m)(A5P) on both substrate and pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801955h

    authors: Kona F,Tao P,Martin P,Xu X,Gatti DL

    更新日期:2009-04-28 00:00:00

  • Physical properties of defined lipopolysaccharide salts.

    abstract::The electron spin resonance probes 5-doxylstearate and 4-(dodecyldimethylammonio)-1-oxy-2,2,6,6-tetramethylpiperidine bromide were used to characterize the fluidity of the acyl chain and head-group regions, respectively, of defined salts of lipopolysaccharide (LPS) from Escherichia coli K12. The removal of the weakly ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00277a042

    authors: Coughlin RT,Haug A,McGroarty EJ

    更新日期:1983-04-12 00:00:00

  • Cooperative binding of midazolam with testosterone and alpha-naphthoflavone within the CYP3A4 active site: a NMR T1 paramagnetic relaxation study.

    abstract::Recent studies have indicated that CYP3A4 exhibits non-Michaelis-Menten kinetics for numerous substrates. Both homo- and heterotropic activation have been reported, and kinetic models have suggested multiple substrates within the active site. We provide some of the first physicochemical data supporting the hypothesis ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051689t

    authors: Cameron MD,Wen B,Allen KE,Roberts AG,Schuman JT,Campbell AP,Kunze KL,Nelson SD

    更新日期:2005-11-01 00:00:00

  • Extracellular Juxtamembrane Segment of ADAM17 Interacts with Membranes and Is Essential for Its Shedding Activity.

    abstract::A wide variety of biological processes including differentiation, regeneration, and cancer progression are regulated by shedding of membrane-anchored proteins. One of the major sheddases is A Disintegrin And Metalloprotease-17 (ADAM17) whose extracellular region consists of a pro-, a catalytic, a disintegrin-, and a m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00497

    authors: Düsterhöft S,Michalek M,Kordowski F,Oldefest M,Sommer A,Röseler J,Reiss K,Grötzinger J,Lorenzen I

    更新日期:2015-09-29 00:00:00

  • Redundancy of mammalian proteasome beta subunit function during endoplasmic reticulum associated degradation.

    abstract::Misfolded proteins in the endoplasmic reticulum (ER) are degraded by N-terminal threonine proteases within the 26S proteasome. Each protease is formed by an activated beta subunit, beta5/X, beta1/Y, or beta2/Z, that exhibits chymotrypsin-like, peptidylglutamyl-peptide hydrolyzing, or trypsin-like activity, respectivel...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011322y

    authors: Oberdorf J,Carlson EJ,Skach WR

    更新日期:2001-11-06 00:00:00

  • Medium-Throughput Screen of Microbially Produced Serotonin via a G-Protein-Coupled Receptor-Based Sensor.

    abstract::Chemical biosensors, for which chemical detection triggers a fluorescent signal, have the potential to accelerate the screening of noncolorimetric chemicals produced by microbes, enabling the high-throughput engineering of enzymes and metabolic pathways. Here, we engineer a G-protein-coupled receptor (GPCR)-based sens...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00605

    authors: Ehrenworth AM,Claiborne T,Peralta-Yahya P

    更新日期:2017-10-17 00:00:00

  • Probing the communication between the regulatory and catalytic domains of a protein tyrosine kinase, Csk.

    abstract::Protein tyrosine kinases (PTKs) are important regulators of mammalian cell function and their own activities are tightly regulated. Underlying their tight regulation, all PTKs contain multiple regulatory domains in addition to a catalytic domain. C-terminal Src kinase (Csk) contains a catalytic domain and a regulatory...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048142j

    authors: Lin X,Ayrapetov MK,Lee S,Parang K,Sun G

    更新日期:2005-02-08 00:00:00

  • The mast cell function-associated antigen and its interactions with the type I Fcepsilon receptor.

    abstract::Rat mucosal-type mast cells of the RBL-2H3 line express a glycoprotein termed the MAst cell Function-associated Antigen (MAFA). When MAFA is clustered by its specific monoclonal antibody G63, secretion normally triggered by aggregating these cells' type I Fcepsilon receptor (FcepsilonRI) is substantially inhibited. Th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011566i

    authors: Song J,Hagen GM,Roess DA,Pecht I,Barisas BG

    更新日期:2002-01-22 00:00:00

  • Mechanistic and metabolic inferences from the binding of substrate analogues and products to arginase.

    abstract::Arginase is a binuclear Mn(2+) metalloenzyme that catalyzes the hydrolysis of L-arginine to L-ornithine and urea. X-ray crystal structures of arginase complexed to substrate analogues N(omega)-hydroxy-L-arginine and N(omega)-hydroxy-nor-L-arginine, as well as the products L-ornithine and urea, complete a set of struct...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002318+

    authors: Cox JD,Cama E,Colleluori DM,Pethe S,Boucher JL,Mansuy D,Ash DE,Christianson DW

    更新日期:2001-03-06 00:00:00

  • Redox reactions associated with iron release from mammalian ferritin.

    abstract::The early redox events involved in iron reduction and mobilization in mammalian ferritin have been investigated by several techniques. Sedimentation velocity measurements of ferritin samples with altered core sizes, prepared by partial reduction and Fe2+ chelation, suggest two different events occur during iron loss f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00430a033

    authors: Jacobs DL,Watt GD,Frankel RB,Papaefthymiou GC

    更新日期:1989-02-21 00:00:00

  • An allosteric intramolecular PDZ-PDZ interaction modulates PTP-BL PDZ2 binding specificity.

    abstract::PDZ (acronym of the synapse-associated protein PSD-95/SAP90, the septate junction protein Discs-large, and the tight junction protein ZO-1) domains are abundant small globular protein interaction domains that mainly recognize the carboxyl termini of their target proteins. Detailed knowledge on PDZ domain binding speci...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700954e

    authors: van den Berk LC,Landi E,Walma T,Vuister GW,Dente L,Hendriks WJ

    更新日期:2007-11-27 00:00:00

  • solution structure, backbone dynamics, and interaction with Cdc42 of Salmonella guanine nucleotide exchange factor SopE2.

    abstract::SopE and SopE2 are delivered by the Salmonella type III secretion system into eukaryotic cells to promote cell invasion. SopE and SopE2 are potent guanine nucleotide exchange factors (GEFs) for Rho GTPases Cdc42 and Rac1 and constitute a novel class of Rho GEFs. Although the sequence of SopE-like GEFs is not at all ho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0490744

    authors: Williams C,Galyov EE,Bagby S

    更新日期:2004-09-28 00:00:00

  • Recognition of ATGA sequences by the unfused aromatic dication DB293 forming stacked dimers in the DNA minor groove.

    abstract::Furamidine and related diamidines represent a promising series of drugs active against widespread parasites, in particular the Pneumocystic carinii pathogen. In this series, the phenylfuranbenzimidazole diamidine derivative DB293 was recently identified as the first unfused aromatic dication capable of forming stacked...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0108453

    authors: Bailly C,Tardy C,Wang L,Armitage B,Hopkins K,Kumar A,Schuster GB,Boykin DW,Wilson WD

    更新日期:2001-08-21 00:00:00

  • NMR studies of DNA support the role of pre-existing minor groove variations in nucleosome indirect readout.

    abstract::We investigated how the intrinsic sequence-dependent properties probed via the phosphate linkages (BI ↔ BII equilibrium) influence the preferred shape of free DNA, and how this affects the nucleosome formation. First, this exploits NMR solution studies of four B-DNA dodecamers that together cover 39 base pairs of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500504y

    authors: Xu X,Ben Imeddourene A,Zargarian L,Foloppe N,Mauffret O,Hartmann B

    更新日期:2014-09-09 00:00:00

  • The fungal product terreic acid is a covalent inhibitor of the bacterial cell wall biosynthetic enzyme UDP-N-acetylglucosamine 1-carboxyvinyltransferase (MurA) .

    abstract::Terreic acid is a metabolite with antibiotic properties produced by the fungus Aspergillus terreus. We found that terreic acid is a covalent inhibitor of the bacterial cell wall biosynthetic enzyme MurA from Enterobacter cloacae and Escherichia coli in vitro. The crystal structure of the MurA dead-end complex with ter...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100365b

    authors: Han H,Yang Y,Olesen SH,Becker A,Betzi S,Schönbrunn E

    更新日期:2010-05-18 00:00:00

  • Targeting of protein phosphatases PP2A and PP2B to the C-terminus of the L-type calcium channel Ca v1.2.

    abstract::The L-type Ca(2+) channel Ca(v)1.2 forms macromolecular signaling complexes that comprise the β(2) adrenergic receptor, trimeric G(s) protein, adenylyl cyclase, and cAMP-dependent protein kinase (PKA) for efficient signaling in heart and brain. The protein phosphatases PP2A and PP2B are part of this complex. PP2A coun...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101018c

    authors: Xu H,Ginsburg KS,Hall DD,Zimmermann M,Stein IS,Zhang M,Tandan S,Hill JA,Horne MC,Bers D,Hell JW

    更新日期:2010-12-07 00:00:00

  • Phosphorylation of Ser111 in Rab8a Modulates Rabin8-Dependent Activation by Perturbation of Side Chain Interaction Networks.

    abstract::GTPases are key players during cellular signaling. Phosphorylation of Rab proteins, which belong to the Ras superfamily of small GTPases regulating intracellular transport, has been implicated in the pathogenesis of Parkinson's disease. For Rab8a, it was shown that serine 111 phosphorylation (pS111) is dependent on th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00516

    authors: Pourjafar-Dehkordi D,Vieweg S,Itzen A,Zacharias M

    更新日期:2019-08-20 00:00:00

  • Mechanistic insight into the photosensory versatility of DXCF cyanobacteriochromes.

    abstract::Cyanobacteriochromes (CBCRs) are photosensory proteins related to the red/far-red phytochromes. Like phytochromes, CBCRs use linear tetrapyrrole (bilin) chromophores covalently attached via a thioether linkage to a conserved Cys residue also found in plant and cyanobacterial phytochromes. Unlike almost all phytochrome...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300171s

    authors: Rockwell NC,Martin SS,Lagarias JC

    更新日期:2012-05-01 00:00:00

  • Membrane structure of voltage-gated channel forming peptides by site-directed spin-labeling.

    abstract::Three spin-labeled derivatives of the voltage-gated peptide alamethicin were prepared with nitroxides at the C-terminal phenyalaninol, and at positions 9 and 15 in the amino acid sequence. In addition, three spin-labeled derivatives of an analog of alamethicin where alpha-methylalanine residues are replaced by leucine...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi951985d

    authors: Barranger-Mathys M,Cafiso DS

    更新日期:1996-01-16 00:00:00

  • Membrane interaction of disease-related dynorphin A variants.

    abstract::The membrane interaction properties of two single-residue variants, R6W and L5S, of the 17-amino acid neuropeptide dynorphin A (DynA) were studied by circular dichroism (CD) and nuclear magnetic resonance (NMR) spectroscopy. Corresponding gene mutations have recently been discovered in humans and causatively linked to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi4004205

    authors: Björnerås J,Gräslund A,Mäler L

    更新日期:2013-06-18 00:00:00

  • Metal-selective DNA-binding response of Escherichia coli NikR.

    abstract::The NikR transcription factor from Escherichia coli is a Ni(II)-dependent repressor that regulates production of the nickel ion transporter encoded by the nik operon. In the previous paper in this issue (Wang, S. C., Dias, A., Bloom, S. L., and Zamble, D. B. (2004) Selectivity of Metal Binding and Metal-Induced Stabil...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049404k

    authors: Bloom SL,Zamble DB

    更新日期:2004-08-10 00:00:00

  • Copurification of the FpvA ferric pyoverdin receptor of Pseudomonas aeruginosa with its iron-free ligand: implications for siderophore-mediated iron transport.

    abstract::The Pseudomonas aeruginosa FpvA receptor is a TonB-dependent outer membrane transport protein that catalyzes uptake of ferric pyoverdin across the outer membrane. Surprisingly, FpvA expressed in P. aeruginosa grown in an iron-deficient medium copurifies with a ligand X that we have characterized by UV, fluorescence, a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990421x

    authors: Schalk IJ,Kyslik P,Prome D,van Dorsselaer A,Poole K,Abdallah MA,Pattus F

    更新日期:1999-07-20 00:00:00

  • Down-regulation of hepatic HMG-CoA reductase in mice by dietary cholesterol: importance of the delta 5 double bond and evidence that oxidation at C-3, C-5, C-6, or C-7 is not involved.

    abstract::It has been suggested that the down-regulation of hepatic HMG-CoA reductase by dietary cholesterol requires modification of the cholesterol molecule before it can exert its suppressive action. In a recent study [Lund, E., Breuer, O., & Björkhem, I. (1992) J. Biol. Chem. 267, 25092-25097], we showed that side-chain hyd...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00167a038

    authors: Lund E,Björkhem I

    更新日期:1994-01-11 00:00:00

  • Interaction and influence of phenylalanine-198 and threonine-199 on catalysis by human carbonic anhydrase III.

    abstract::Site-directed mutants of human carbonic anhydrase III were used to examine the role of Thr-199 and its interaction with Phe-198 in the catalyzed hydration of CO2. Threonine-199 is a hydrogen bond acceptor for the zinc-bound water, and Phe-198 forms part of the hydrophobic side of the active-site cavity of carbonic anh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00082a004

    authors: Chen X,Tu C,LoGrasso PV,Laipis PJ,Silverman DN

    更新日期:1993-08-10 00:00:00

  • A Rational Design Strategy for the Selective Activity Enhancement of a Molecular Chaperone toward a Target Substrate.

    abstract::Molecular chaperones facilitate the folding and assembly of proteins and inhibit their aberrant aggregation. They thus offer several opportunities for biomedical and biotechnological applications, as for example they can often prevent protein aggregation more effectively than other therapeutic molecules, including sma...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00459

    authors: Aprile FA,Sormanni P,Vendruscolo M

    更新日期:2015-08-18 00:00:00

  • Tyrosine kinase-mediated serine phosphorylation of adenylyl cyclase.

    abstract::Receptor tyrosine kinase (RTK) activation is associated with modulation of heptahelical receptor-stimulated adenylyl cyclase responses. The mechanisms underlying the RTK-mediated enhancement of adenylyl cyclase function remain unclear. In the present studies, we show that the tyrosine kinase-dependent enhancement of a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0015818

    authors: Tan CM,Kelvin DJ,Litchfield DW,Ferguson SS,Feldman RD

    更新日期:2001-02-13 00:00:00

  • Chromatographic separation on phosphocellulose of activated and nonactivated forms of steroid-receptor complex. Purification of the activated complex.

    abstract::Steroid-receptor complexes formed at low temperature and ionic strength are unable to bind to target cell nuclei. After a temporary exposure to high ionic strength and/or temperature they become activated (i.e., able to bind to nuclei). However, there exists an equilibrium between activated and nonactivated complexes;...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00664a025

    authors: Atger M,Milgrom E

    更新日期:1976-09-21 00:00:00