A red-fluorescent substrate microarray for lipase fingerprinting.

Abstract:

:A lipase substrate microarray was obtained by printing aliphatic C2-C12 monoesters of (5R)- and (5S)-3-(5,6-dihydroxyhexyloxy)benzaldehyde by reductive alkylation on amine-functionalized glass slides coated with bovine serum albumin and a short PEG linker. The microarray features 12 substrates and their 66 possible binary mixtures spotted in a 9 x 36 spot array. Lipase reactions are detected by chemoselective NaIO(4)-oxidation of the 1,2-diol hydrolysis product to form an aldehyde, which is then tagged with the red-fluorescent dye rhodamine B sulfohydrazide . Specific fingerprints are produced by active enzymes. These experiments provide the first example of lipase fingerprinting using microarrays.

journal_name

Mol Biosyst

journal_title

Molecular bioSystems

authors

Grognux J,Reymond JL

doi

10.1039/b609275f

subject

Has Abstract

pub_date

2006-10-01 00:00:00

pages

492-8

issue

10

eissn

1742-206X

issn

1742-2051

journal_volume

2

pub_type

杂志文章
  • Pretubulysin derived probes as novel tools for monitoring the microtubule network via activity-based protein profiling and fluorescence microscopy.

    abstract::Microtubules (mt) are highly dynamic polymers composed of alpha- and beta-tubulin monomers that are present in all dividing and non-dividing cells. A broad variety of natural products exists that are known to interfere with the microtubule network, by either stabilizing or de-stabilizing these rope-like polymers. Amon...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c2mb25144b

    authors: Eirich J,Burkhart JL,Ullrich A,Rudolf GC,Vollmar A,Zahler S,Kazmaier U,Sieber SA

    更新日期:2012-08-01 00:00:00

  • A metabolomics approach for predicting the response to neoadjuvant chemotherapy in cervical cancer patients.

    abstract::Cervical cancer is a clinical and pathological heterogeneity disease, which requires different types of treatments and leads to a variety of outcomes. In clinical practice, only some patients benefit from chemotherapy treatment. Identifying patients who will be responsive to chemotherapy could increase their survival ...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c4mb00054d

    authors: Hou Y,Yin M,Sun F,Zhang T,Zhou X,Li H,Zheng J,Chen X,Li C,Ning X,Lou G,Li K

    更新日期:2014-08-01 00:00:00

  • On the basic computational structure of gene regulatory networks.

    abstract::Gene regulatory networks constitute the first layer of the cellular computation for cell adaptation and surveillance. In these webs, a set of causal relations is built up from thousands of interactions between transcription factors and their target genes. The large size of these webs and their entangled nature make it...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/B904960f

    authors: Rodríguez-Caso C,Corominas-Murtra B,Solé RV

    更新日期:2009-12-01 00:00:00

  • Target profiling of 4-hydroxyderricin in S. aureus reveals seryl-tRNA synthetase binding and inhibition by covalent modification.

    abstract::4-Hydroxyderricin is a heat labile bioactive chalcone isolated from the plant Angelica keiskei. It received attention due to its antibiotic potency against several strains of bacteria including pathogens such as Staphylococcus aureus. Despite these promising pharmacological properties, the exact mode of action or the ...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c2mb25446h

    authors: Battenberg OA,Yang Y,Verhelst SH,Sieber SA

    更新日期:2013-03-01 00:00:00

  • Metabolomics combined with pattern recognition and bioinformatics analysis methods for the development of pharmacodynamic biomarkers on liver fibrosis.

    abstract::The major obstacle for the development of targeted therapies is the lack of pharmacodynamic (PD) biomarkers to provide an early readout of biological activities. As the modulation of metabolites may reflect the biological changes occurring in the targets, metabolomics is promising to be an efficient way to explore PD ...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c7mb00093f

    authors: Fang J,Wang L,Wang Y,Qiu M,Zhang Y

    更新日期:2017-07-25 00:00:00

  • Structure-based identification of MHC binding peptides: Benchmarking of prediction accuracy.

    abstract::Identification of MHC binding peptides is essential for understanding the molecular mechanism of immune response. However, most of the prediction methods use motifs/profiles derived from experimental peptide binding data for specific MHC alleles, thus limiting their applicability only to those alleles for which such d...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c0mb00013b

    authors: Kumar N,Mohanty D

    更新日期:2010-12-01 00:00:00

  • Metabolomic identification of diagnostic plasma biomarkers in humans with chronic heart failure.

    abstract::Chronic heart failure (CHF), as a progressive clinical syndrome, is characterized by failure of enough blood supply from the heart to meet the body's metabolic demands, and there is intense interest in identifying novel biomarkers that could make contributions to the diagnosis of CHF. Metabolomics, compared with curre...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c3mb70227h

    authors: Wang J,Li Z,Chen J,Zhao H,Luo L,Chen C,Xu X,Zhang W,Gao K,Li B,Zhang J,Wang W

    更新日期:2013-11-01 00:00:00

  • Systematic analysis of histone modification readout.

    abstract::To faithfully execute diverse biological programs all cells need to access and distribute their genomes in a highly organized way. In the nucleus of eukaryotic cells DNA is packed with histone proteins into chromatin. The originating nucleo-protein complex is the regulatory platform for all genetic processes. Of these...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章,评审

    doi:10.1039/c2mb25328c

    authors: Nikolov M,Fischle W

    更新日期:2013-02-02 00:00:00

  • N-Succinyl-chitosan grafted with low molecular weight polyethylenimine as a serum-resistant gene vector.

    abstract::Low transfection efficiency and inactivation by serum are the major drawbacks for cationic polymers when used as non-viral gene vectors. Here, a series of N-succinyl-chitosan-graft-polyethylenimine (NSC-g-PEI) copolymers with different compositions were synthesized through grafting low molecular weight PEI (800 Da) to...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/b822505b

    authors: Lu B,Sun YX,Li YQ,Zhang XZ,Zhuo RX

    更新日期:2009-06-01 00:00:00

  • Proteomic approaches to studying protein tyrosine phosphatases.

    abstract::Protein tyrosine phosphatases (PTPs) constitute a large family of enzymes that play key roles in cell signaling. Deregulation of PTP activity results in aberrant tyrosine phosphorylation, which has been linked to the etiology of several human diseases, including cancer. Since phosphate removal by the PTPs can both enh...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章,评审

    doi:10.1039/b700704n

    authors: Liang F,Kumar S,Zhang ZY

    更新日期:2007-05-01 00:00:00

  • Protein DJ-1 and its anti-oxidative stress function play an important role in renal cell mediated response to profibrotic agents.

    abstract::In the pathogenesis of renal fibrosis, oxidative stress (OS) enhances the production of reactive oxygen species (ROS) leading to sustained cell growth, inflammation, excessive tissue remodelling and accumulation, which results in the development and acceleration of renal damage. In our previous work (Eltoweissy et al....

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c5mb00887e

    authors: Eltoweissy M,Dihazi GH,Müller GA,Asif AR,Dihazi H

    更新日期:2016-05-24 00:00:00

  • A new multi-scale method to reveal hierarchical modular structures in biological networks.

    abstract::Biological networks are effective tools for studying molecular interactions. Modular structure, in which genes or proteins may tend to be associated with functional modules or protein complexes, is a remarkable feature of biological networks. Mining modular structure from biological networks enables us to focus on a s...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c6mb00617e

    authors: Jiao QJ,Huang Y,Shen HB

    更新日期:2016-11-15 00:00:00

  • Identifying subcellular localizations of mammalian protein complexes based on graph theory with a random forest algorithm.

    abstract::In the post-genome era, one of the most important and challenging tasks is to identify the subcellular localizations of protein complexes, and further elucidate their functions in human health with applications to understand disease mechanisms, diagnosis and therapy. Although various experimental approaches have been ...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c3mb25451h

    authors: Li ZC,Lai YH,Chen LL,Chen C,Xie Y,Dai Z,Zou XY

    更新日期:2013-04-05 00:00:00

  • Closing in on complete pathways of biotin biosynthesis.

    abstract::Biotin is an enzyme cofactor indispensable to metabolic fixation of carbon dioxide in all three domains of life. Although the catalytic and physiological roles of biotin have been well characterized, the biosynthesis of biotin remains to be fully elucidated. Studies in microbes suggest a two-stage biosynthetic pathway...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章,评审

    doi:10.1039/c1mb05022b

    authors: Lin S,Cronan JE

    更新日期:2011-06-01 00:00:00

  • The future of proteomic analysis in biological systems and molecular medicine.

    abstract::Proteomics is the study of proteins and their interactions within complex biological systems. While this field is often associated with mass spectrometry, it is more useful to consider proteomics in the context of an objective: to identify and understand the molecular basis of health and disease at the protein level i...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/b611446f

    authors: Bark SJ,Hook V

    更新日期:2007-01-01 00:00:00

  • Residues 762-801 of PLD1 mediate the interaction with PED/PEA15.

    abstract::The interaction of Phospholipase D1 (PLD1) by its C-terminal domain D4 with PED/PEA15 has been indicated as a target for type 2 diabetes. PED/PEA15 is overexpressed in several tissues of individuals affected by type 2 diabetes and its overexpression in intact cells and in transgenic animal models impairs insulin regul...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c005272h

    authors: Doti N,Cassese A,Marasco D,Paturzo F,Sabatella M,Viparelli F,Dathan N,Monti SM,Miele C,Formisano P,Beguinot F,Ruvo M

    更新日期:2010-10-01 00:00:00

  • Large-scale investigation of oxygen response mutants in Saccharomyces cerevisiae.

    abstract::A genome-wide screen of a yeast non-essential gene-deletion library was used to identify sick phenotypes due to oxygen deprivation. The screen provided a manageable list of 384 potentially novel as well as known oxygen responding (anoxia-survival) genes. The gene-deletion mutants were further assayed for sensitivity t...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c3mb25516f

    authors: Samanfar B,Omidi K,Hooshyar M,Laliberte B,Alamgir M,Seal AJ,Ahmed-Muhsin E,Viteri DF,Said K,Chalabian F,Golshani A,Wainer G,Burnside D,Shostak K,Bugno M,Willmore WG,Smith ML,Golshani A

    更新日期:2013-06-01 00:00:00

  • Inhibition of lysine biosynthesis: an evolving antibiotic strategy.

    abstract::Bacterial biosynthesis of lysine has come under increased scrutiny as a target for novel antibacterial agents as it provides lysine for protein synthesis and both lysine and meso-diaminopimelate for construction of the bacterial peptidoglycan cell wall. In this Highlight article we review recent advances in the valida...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章,评审

    doi:10.1039/b705624a

    authors: Hutton CA,Perugini MA,Gerrard JA

    更新日期:2007-07-01 00:00:00

  • A gold nanoparticles based immuno-bioprobe for detection of Vi capsular polysaccharide of Salmonella enterica serovar Typhi.

    abstract::A rapid and sensitive gold-nanobioprobe based immunoassay format has been presented for the detection of capsular Vi polysaccharide of Salmonella enterica serovar Typhi (surface antigen) using anti-Vi antibodies. The Vi antigen was extracted from serovar Typhi cells, under the optimised growth conditions for its over-...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c2mb25048a

    authors: Pandey SK,Suri CR,Chaudhry M,Tiwari RP,Rishi P

    更新日期:2012-07-06 00:00:00

  • Proteomic analysis of rhein-induced cyt: ER stress mediates cell death in breast cancer cells.

    abstract::Rhein is a natural product purified from herbal plants such as Rheum palmatum, which has been shown to have anti-angiogenesis and anti-tumor metastasis properties. However, the biological effects of rhein on the behavior of breast cancers are not completely elucidated. To evaluate whether rhein might be useful in the ...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c4mb00451e

    authors: Huang HJ,Lin CC,Chou HC,Chen YW,Lin ST,Lin YC,Lin DY,Lyu KW,Chan HL

    更新日期:2014-12-01 00:00:00

  • Structural diversity induced by pyrene intercalators in homogeneous oligodeoxyguanylates.

    abstract::Homogeneous oligodeoxyguanylates incorporating small-molecule intercalator pyrene moieties in a 1,5 relationship form various structures of dimer, trimer, tetramer and internal hairpin form that are yellowish in color because of the intermolecular interactions between the pyrene units. ...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/b926677a

    authors: Jeong HS,Park M,Yi JW,Joo T,Kim BH

    更新日期:2010-06-01 00:00:00

  • Modeling the permeability of drug-like molecules through the cell wall of Mycobacterium tuberculosis: an analogue based approach.

    abstract::The emergence of drug resistant strains of Mycobacterium Tuberculosis (Mtb) accentuates the urgent need for the development of novel antitubercular drugs. The major causes of drug resistance are genetic mutations, the influx-efflux transporter system, and the complex cell wall system of Mtb, which can function as perm...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c6mb00457a

    authors: Janardhan S,Ram Vivek M,Narahari Sastry G

    更新日期:2016-10-18 00:00:00

  • Proteomic and ionomic profiling reveals significant alterations of protein expression and calcium homeostasis in cystic fibrosis cells.

    abstract::Cystic fibrosis (CF) is an autosomal recessive disorder associated with mutations of the cystic fibrosis transmembrane conductance regulator (CFTR) gene and defective chloride transport across the epithelial cell membranes. Abnormal epithelial ion transport is the primary cause of persistent airway infections and chro...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c3mb25594h

    authors: Ciavardelli D,D'Orazio M,Pieroni L,Consalvo A,Rossi C,Sacchetta P,Di Ilio C,Battistoni A,Urbani A

    更新日期:2013-06-01 00:00:00

  • Proteomic analysis of protein adsorption capacity of different haemodialysis membranes.

    abstract::Protein-adsorptive properties are a key feature of membranes used for haemodialysis treatment. Protein adsorption is vital to the biocompatibility of a membrane material and influences membrane's performance. The object of the present study is to investigate membrane biocompatibility by correlating the adsorbed proteo...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c2mb05393d

    authors: Urbani A,Lupisella S,Sirolli V,Bucci S,Amoroso L,Pavone B,Pieroni L,Sacchetta P,Bonomini M

    更新日期:2012-04-01 00:00:00

  • A combined chemometric and quantitative NMR analysis of HIV/AIDS serum discloses metabolic alterations associated with disease status.

    abstract::Individuals infected with the human immunodeficiency virus (HIV) often suffer from concomitant metabolic complications. Treatment with antiretroviral therapy has also been shown to alter the metabolism of patients. Although chemometric analysis of nuclear magnetic resonance (NMR) spectra of human sera can distinguish ...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c4mb00347k

    authors: McKnight TR,Yoshihara HA,Sitole LJ,Martin JN,Steffens F,Meyer D

    更新日期:2014-11-01 00:00:00

  • UHPLC-LTQ-Orbitrap MS combined with spike-in method for plasma metabonomics analysis of acute myocardial ischemia rats and pretreatment effect of Danqi Tongmai tablet.

    abstract::Undoubtedly, metabonomics can reveal the comprehensive efficacies of traditional Chinese medicine (TCM) formulae and its complex mechanism at the molecular biological level. In this study, an attempt was made to address the pretreatment effect of a TCM formula. In this case, as a critical point, we should first know h...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c4mb00529e

    authors: Yan B,Deng Y,Hou J,Bi Q,Yang M,Jiang B,Liu X,Wu W,Guo D

    更新日期:2015-02-01 00:00:00

  • Impaired JAK2-induced activation of STAT3 in failing human myocytes.

    abstract::Although angiotensin (Ang)II-induced Janus-activated kinase (JAK)2 phosphorylation was reported to be enhanced in failing human cardiomyocytes, the downstream balance between cardio-protective (signal transducer and activator of transcription-STAT3) and the pro-inflammatory (STAT2 and STAT5) response remains unexplore...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c2mb25120e

    authors: Cambi GE,Lucchese G,Djeokeng MM,Modesti A,Fiaschi T,Faggian G,Sani G,Modesti PA

    更新日期:2012-09-01 00:00:00

  • Lipid dynamics in zebrafish embryonic development observed by DESI-MS imaging and nanoelectrospray-MS.

    abstract::The zebrafish Danio rerio is a model vertebrate organism for understanding biological mechanisms. Recent studies have explored using zebrafish as a model for lipid-related diseases, for in vivo fish bioassays, and for embryonic toxicity experiments. Mass spectrometry (MS) and MS imaging are established tools for lipid...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c6mb00168h

    authors: Pirro V,Guffey SC,Sepúlveda MS,Mahapatra CT,Ferreira CR,Jarmusch AK,Cooks RG

    更新日期:2016-06-01 00:00:00

  • Chemical genetics and cereal starch metabolism: structural basis of the non-covalent and covalent inhibition of barley β-amylase.

    abstract::There are major issues regarding the proposed pathway for starch degradation in germinating cereal grain. Given the commercial importance but genetic intractability of the problem, we have embarked on a program of chemical genetics studies to identify and dissect the pathway and regulation of starch degradation in ger...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c0mb00204f

    authors: Rejzek M,Stevenson CE,Southard AM,Stanley D,Denyer K,Smith AM,Naldrett MJ,Lawson DM,Field RA

    更新日期:2011-03-01 00:00:00

  • Selective targeting of MAPK family kinases JNK over p38 by rationally designed peptides as potential therapeutics for neurological disorders and epilepsy.

    abstract::Human mitogen-activated protein kinase (MAPK) family members JNK and p38 are two homologous protein-serine/threonine kinases but play distinct roles in the pathological process of neurological disorders. Selective targeting of JNK over p38 has been established as a potential therapeutic approach to epilepsy and other ...

    journal_title:Molecular bioSystems

    pub_type: 杂志文章

    doi:10.1039/c6mb00297h

    authors: Zhuo ZH,Sun YZ,Jin PN,Li FY,Zhang YL,Wang HL

    更新日期:2016-07-19 00:00:00