Linkage disequilibrium between DNA markers at the low-density lipoprotein receptor gene.

Abstract:

:We determined pairwise linkage disequilibria between 12 restriction fragment length polymorphism (RFLP) markers at or near the low-density lipoprotein receptor (LDLR) locus on chromosome 19p13.2-13.1 in 92 unrelated individuals. Of these 12 RFLPs, two were newly identified under a cosmid-based strategy designed to screen for RFLPs. We estimated linkage disequilibrium by determining three different measurements: D (the maximum likelihood estimate of linkage disequilibrium), D' (Lewontin's normalized estimate of D), and r (an index of gametic correlation). When r was used as the estimate of linkage disequilibrium, five of the 66 comparisons were significant according to a level of significance adjusted by the Bonferroni-Holm correction. Only four pairs of RFLPs within a 100 kb region that included the LDLR gene itself were in significant linkage disequilibrium. Although we were able to detect strong linkage disequilibrium between some pairs of RFLPs in this sample, most RFLPs at the LDLR locus were not in strong linkage disequilibrium despite their physical proximity.

journal_name

Genet Epidemiol

journal_title

Genetic epidemiology

authors

Hegele RA,Plaetke R,Lalouel JM

doi

10.1002/gepi.1370070114

subject

Has Abstract

pub_date

1990-01-01 00:00:00

pages

69-81

issue

1

eissn

0741-0395

issn

1098-2272

journal_volume

7

pub_type

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