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Genome-wide association study of body weight in Wenshang Barred chicken based on the SLAF-seq technology.

Abstract：

:Chicken body weight (BW) is an economically important trait, and many studies have been conducted on genetic selection for BW. However, previous studies have detected functional chromosome mutations or regions using gene chips. The present study used the specific-locus amplified fragment sequencing (SLAF-seq) technology to perform a genome-wide association study (GWAS) on purebred Wengshang Barred chicken. A total of 1,286,715 single-nucleotide polymorphisms (SNPs) were detected, and 175,211 SNPs were selected as candidate SNPs for genome-wide association analysis using TASSEL general linear models. Six SNP markers reached genome-wide significance. Of these, rs732048524, rs735522839, rs738991545, and rs15837818 were significantly associated with body weight at 28 days (BW28), while rs314086457 and rs315694878 were significantly associated with BW120. These SNPs are close to seven genes (PRSS23, ME3, FAM181B, NABP1, SDPR, TSSK6L2, and RBBP8). Moreover, 24 BW-associated SNPs reached "suggestive" genome-wide significance. Of these, 6, 13, 1, and 4 SNPs were associated with BW28, BW56, BW80, and BW120, respectively. These results would enrich the studies on BW and promote the use of Chinese chicken, especially the Wenshang Barred chicken.

journal_name

J Appl Genet

journal_title

Journal of applied genetics

authors

Li F,Han H,Lei Q,Gao J,Liu J,Liu W,Zhou Y,Li H,Cao D

doi

10.1007/s13353-018-0452-7

subject

Has Abstract

pub_date

2018-08-01 00:00:00

pages

305-312

issue

3

eissn

1234-1983

issn

2190-3883

pii

10.1007/s13353-018-0452-7

journal_volume

59

pub_type

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