SMARTCyp: A 2D Method for Prediction of Cytochrome P450-Mediated Drug Metabolism.

Abstract:

:SMARTCyp is an in silico method that predicts the sites of cytochrome P450-mediated metabolism of druglike molecules. The method is foremost a reactivity model, and as such, it shows a preference for predicting sites that are metabolized by the cytochrome P450 3A4 isoform. SMARTCyp predicts the site of metabolism directly from the 2D structure of a molecule, without requiring calculation of electronic properties or generation of 3D structures. This is a major advantage, because it makes SMARTCyp very fast. Other advantages are that experimental data are not a prerequisite to create the model, and it can easily be integrated with other methods to create models for other cytochrome P450 isoforms. Benchmarking tests on a database of 394 3A4 substrates show that SMARTCyp successfully identifies at least one metabolic site in the top two ranked positions 76% of the time. SMARTCyp is available for download at http://www.farma.ku.dk/p450.

journal_name

ACS Med Chem Lett

authors

Rydberg P,Gloriam DE,Zaretzki J,Breneman C,Olsen L

doi

10.1021/ml100016x

subject

Has Abstract

pub_date

2010-03-15 00:00:00

pages

96-100

issue

3

issn

1948-5875

journal_volume

1

pub_type

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