Hash function performance on different biological databases.

Abstract:

:Open hashing is used to demonstrate the effectiveness of several hashing functions for the uniform distribution of biological records. The three types of database tested include (1) genetic nomenclature, mutation sites and strain names, (2) surnames extracted from literature files and (3) a set of 1000 numeric ASCII strings. Several hash functions (hashpjw, hashcrc and hashquad) showed considerable versatility on all data sets examined while two hash functions, hashsum and hashsmc, performed poorly, on the same databases.

authors

Breen EJ,Williams KL

doi

10.1016/0169-2607(89)90164-8

subject

Has Abstract

pub_date

1989-02-01 00:00:00

pages

87-91

issue

2

eissn

0169-2607

issn

1872-7565

pii

0169-2607(89)90164-8

journal_volume

28

pub_type

杂志文章
  • SOA-based digital library services and composition in biomedical applications.

    abstract::Carefully collected, high-quality data are crucial in biomedical visualization, and it is important that the user community has ready access to both this data and the high-performance computing resources needed by the complex, computational algorithms that will process it. Biological researchers generally require data...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2010.08.009

    authors: Zhao X,Liu E,Clapworthy GJ,Viceconti M,Testi D

    更新日期:2012-06-01 00:00:00

  • ENDO-LAB: an integrated, portable endocrinology laboratory software system.

    abstract::ENDO-LAB is an IBM PC-based system which performs calculations and record-keeping for the Vanderbilt University Medical Center Endocrinology Laboratory. It manages maintenance and quality control, and prints reports for regulatory agencies. The system was designed to minimize paperwork without changing laboratory proc...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(88)90088-0

    authors: Mitchel EF Jr,Schach SR,Island DP

    更新日期:1988-11-01 00:00:00

  • A human tissue and data resource: an overview of opportunities, challenges, and development of a provider/researcher partnership model.

    abstract::As we continue to strive to apply the findings of in vitro and animal studies to human disease and transition from genomics to proteomics, we will experience an ever-increasing need for human tissues. A web based system that provides access to tissues repositories and associated data will best facilitate the access to...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章,评审

    doi:10.1016/s0169-2607(02)00002-0

    authors: Kort EJ,Campbell B,Resau JH

    更新日期:2003-02-01 00:00:00

  • Intuitive user interfaces (IUI): a CASE starting point for design and programming.

    abstract::The acceptance of a software product depends to a considerable extent on the user interface. The class of graphic-oriented user interfaces that are called Intuitive User Interfaces (IUI) is described. These interfaces allow the user to learn to operate software programs quickly. In the following the graphical layout p...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(92)90087-n

    authors: Bödi RA,Kaulich TW

    更新日期:1992-03-01 00:00:00

  • Connecting high-dimensional mRNA and miRNA expression data for binary medical classification problems.

    abstract::In modern molecular biology, high-throughput experiments allow the simultaneous study of expression levels of thousands of biopolymers such as mRNAs, miRNAs or proteins. A typical goal of such experiments is to find molecular signatures that can distinguish between different types of tissue or that can predict a thera...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2013.05.013

    authors: Fuchs M,Beißbarth T,Wingender E,Jung K

    更新日期:2013-09-01 00:00:00

  • Remote access methods for exploratory data analysis and statistical modelling: Privacy-Preserving Analytics.

    abstract::This paper is concerned with the challenge of enabling the use of confidential or private data for research and policy analysis, while protecting confidentiality and privacy by reducing the risk of disclosure of sensitive information. Traditional solutions to the problem of reducing disclosure risk include releasing d...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2008.04.001

    authors: Sparks R,Carter C,Donnelly JB,O'Keefe CM,Duncan J,Keighley T,McAullay D

    更新日期:2008-09-01 00:00:00

  • Fast unsupervised nuclear segmentation and classification scheme for automatic allred cancer scoring in immunohistochemical breast tissue images.

    abstract:BACKGROUND AND OBJECTIVE:This paper presents an improved scheme able to perform accurate segmentation and classification of cancer nuclei in immunohistochemical (IHC) breast tissue images in order to provide quantitative evaluation of estrogen or progesterone (ER/PR) receptor status that will assist pathologists in can...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2018.08.005

    authors: Mouelhi A,Rmili H,Ali JB,Sayadi M,Doghri R,Mrad K

    更新日期:2018-10-01 00:00:00

  • Computer tool to evaluate the cue reactivity of chemically dependent individuals.

    abstract:BACKGROUND AND OBJECTIVE:Anxiety is one of the major influences on the dropout of relapse and treatment of substance abuse treatment. Chemically dependent individuals need (CDI) to be aware of their emotional state in situations of risk during their treatment. Many patients do not agree with the diagnosis of the therap...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.11.014

    authors: Silva MLD,Frère AF,Oliveira HJQ,Martucci Neto H,Scardovelli TA

    更新日期:2017-03-01 00:00:00

  • Automatic quantification of the LV function and mass: A deep learning approach for cardiovascular MRI.

    abstract:OBJECTIVE:This paper proposes a novel approach for automatic left ventricle (LV) quantification using convolutional neural networks (CNN). METHODS:The general framework consists of one CNN for detecting the LV, and another for tissue classification. Also, three new deep learning architectures were proposed for LV quan...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2018.12.002

    authors: Curiale AH,Colavecchia FD,Mato G

    更新日期:2019-02-01 00:00:00

  • Cross-sectional photoacoustic tomography image reconstruction with a multi-curve integration model.

    abstract:BACKGROUND AND OBJECTIVE:In acoustic inversion of photoacoustic tomography (PAT), an imaging model that precisely describes both the ultrasonic wave propagation and the detector properties is of crucial importance. Inspired by the multi-stripe integration model in clinical X-ray computed tomography systems, in this wor...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105731

    authors: Qi L,Huang S,Li X,Zhang S,Lu L,Feng Q,Chen W

    更新日期:2020-12-01 00:00:00

  • Comparison of algorithms for out-of-plane artifacts removal in digital tomosynthesis reconstructions.

    abstract::Digital tomosynthesis is a method of limited angle reconstruction of tomographic images produced at variable heights, on the basis of a set of angular projections taken in an arc around human anatomy. Reconstructed tomograms from unprocessed original projection images, however, are invariably affected by tomographic n...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2011.09.013

    authors: Bliznakova K,Bliznakov Z,Buliev I

    更新日期:2012-07-01 00:00:00

  • Artificial neural networks for closed loop control of in silico and ad hoc type 1 diabetes.

    abstract::The closed loop control of blood glucose levels might help to reduce many short- and long-term complications of type 1 diabetes. Continuous glucose monitoring and insulin pump systems have facilitated the development of the artificial pancreas. In this paper, artificial neural networks are used for both the identifica...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2011.11.006

    authors: Fernandez de Canete J,Gonzalez-Perez S,Ramos-Diaz JC

    更新日期:2012-04-01 00:00:00

  • Detecting negation and scope in Chinese clinical notes using character and word embedding.

    abstract:BACKGROUND AND OBJECTIVES:Researchers have developed effective methods to index free-text clinical notes into structured database, in which negation detection is a critical but challenging step. In Chinese clinical records, negation detection is particularly challenging because it may depend on upstream Chinese informa...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.11.009

    authors: Kang T,Zhang S,Xu N,Wen D,Zhang X,Lei J

    更新日期:2017-03-01 00:00:00

  • Construction of patient-specific surface models from MR images: application to bioelectromagnetism.

    abstract::Patient-specific geometric models are needed in many engineering problems. This work reports a novel software tool developed to construct individualized triangulated surface models from MR images. The program consists of three main parts: segmentation, triangulation and registration. The software tool was developed un...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/s0169-2607(02)00125-6

    authors: Lötjönen J

    更新日期:2003-10-01 00:00:00

  • Encryption-free data transmission and hand-over in two-tier body area networks.

    abstract:BACKGROUND AND OBJECTIVE:Deployment of Body Area Networks (BAN) in hospitals can enable real time data collection and analysis for patient health. Such networks have a two-tier structure: the primary layer consists of nodes that are installed on hospital facilities, while the second tier contains sensors on patient bod...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105411

    authors: Wang W,Qin T,Wang Y

    更新日期:2020-08-01 00:00:00

  • IntroStat: a hypertext-based design for an electronic textbook to introduce biomedical statistics.

    abstract::A hypertext-based system called IntroStat has been developed to introduce fundamental methods of biomedical statistics. The system has been developed on a Macintosh II using HyperCard. It is written mainly in Hypertalk, a scripting language of HyperCard. Being an electronic textbook of probability and statistics, the ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(95)01623-2

    authors: Okada M,O'Brien M

    更新日期:1995-04-01 00:00:00

  • Cutting procedures with improved visual effects and haptic interaction for surgical simulation systems.

    abstract:BACKGROUND AND OBJECTIVES:Surface rendering and physical models with constant parameters are often employed for cutting procedures in conventional surgical simulators. As a consequence, the internal structures of soft tissues cannot be rendered properly and haptic interaction is unrealistic. In order to improve both th...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105270

    authors: Shi W,Liu PX,Zheng M

    更新日期:2020-02-01 00:00:00

  • Facilitating pharmacometric workflow with the metrumrg package for R.

    abstract::metrumrg is an R package that facilitates workflow for the discipline of pharmacometrics. Support is provided for data preparation, modeling, simulation, diagnostics, and reporting. Existing tools and techniques are emphasized where available; original solutions are provided for otherwise unmet needs. In particular, m...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2012.08.009

    authors: Bergsma TT,Knebel W,Fisher J,Gillespie WR,Riggs MM,Gibiansky L,Gastonguay MR

    更新日期:2013-01-01 00:00:00

  • Volumetric interpolation of tomographic sequences for accurate 3D reconstruction of anatomical parts.

    abstract:BACKGROUND AND OBJECTIVE:Tomographic sequences of biomedical images are commonly used to achieve a three-dimensional visualization of the human anatomy. In some cases, the number of images contained in the sequence is limited, e.g., in low-dose computed tomography acquired on neonatal patients, resulting in a coarse an...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105525

    authors: Santarelli C,Argenti F,Uccheddu F,Alparone L,Carfagni M

    更新日期:2020-10-01 00:00:00

  • Fast computation of sample entropy and approximate entropy in biomedicine.

    abstract::Both sample entropy and approximate entropy are measurements of complexity. The two methods have received a great deal of attention in the last few years, and have been successfully verified and applied to biomedical applications and many others. However, the algorithms proposed in the literature require O(N(2)) execu...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2010.12.003

    authors: Pan YH,Wang YH,Liang SF,Lee KT

    更新日期:2011-12-01 00:00:00

  • A medical reasoning program that improves with experience.

    abstract::A physician's problem-solving performance improves with experience. The performance of most medical expert systems does not. The author has developed a diagnosis program for coronary disease that improves its performance by remembering and learning from cases that it has already solved. The program diagnoses commonly-...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(89)90070-9

    authors: Koton P

    更新日期:1989-10-01 00:00:00

  • A simple computer programme for biokinetic study of 99Tcm-radiopharmaceuticals.

    abstract::A simple programme has been written in GW BASIC to calculate the percentage activity of 99Tcm-radiopharmaceuticals in different tissues after biodistribution. The programme is efficient, easy to handle and produces a permanent record in terms of a final report. ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(94)90139-2

    authors: Imran MB,Khurshid SJ,Anwar K

    更新日期:1994-02-01 00:00:00

  • Predicting daily outcomes in acetaminophen-induced acute liver failure patients with machine learning techniques.

    abstract:BACKGROUND/OBJECTIVE:Assessing prognosis for acetaminophen-induced acute liver failure (APAP-ALF) patients during the first week of hospitalization often presents significant challenges. Current models such as the King's College Criteria (KCC) and the Acute Liver Failure Study Group (ALFSG) Prognostic Index are develop...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.04.012

    authors: Speiser JL,Karvellas CJ,Wolf BJ,Chung D,Koch DG,Durkalski VL

    更新日期:2019-07-01 00:00:00

  • Parameter identification and sedative sensitivity analysis of an agitation-sedation model.

    abstract::Sedation administration and agitation management are fundamental activities in any intensive care unit. A lack of objective measures of agitation and sedation, as well as poor understanding of the underlying dynamics, contribute to inefficient outcomes and expensive healthcare. Recent models of agitation-sedation dyna...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2006.06.011

    authors: Rudge AD,Chase JG,Shaw GM,Lee D,Hann CE

    更新日期:2006-09-01 00:00:00

  • Virtual reality-based measurement of ocular deviation in strabismus.

    abstract:BACKGROUND AND OBJECTIVE:Strabismus is an eye movement disorder in which shows the abnormal ocular deviation. Cover tests have mainly been used in the clinical diagnosis of strabismus for treatment. However, the whole process depends on the doctor's level of experience, which could be subjected to several factors. In t...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2019.105132

    authors: Miao Y,Jeon JY,Park G,Park SW,Heo H

    更新日期:2020-03-01 00:00:00

  • Calcium sparks in muscle cells: interactive procedures for automatic detection and measurements on line-scan confocal images series.

    abstract::In muscle cells, force development is controlled by Ca2+ ions, which are rapidly released from the sarcoplasmic reticulum (SR) during sarcolemmal depolarization. In addition to this synchronized spatially homogeneous calcium signal, localized quantal Ca2+ release events (sparks) have been recorded using laser scanning...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2004.06.004

    authors: Sebille S,Cantereau A,Vandebrouck C,Balghi H,Constantin B,Raymond G,Cognard C

    更新日期:2005-01-01 00:00:00

  • Practical mini-PACS based on a hybrid video and digital network.

    abstract::The Department of Radiology of the Shinshu University Hospital is presently in the process of developing a new type of mini-PACS with a hybrid architecture consisting of a video and a digital image archiving network. The video block consists of a server station with a video write-once optical disk (LD) and three works...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/0169-2607(91)90058-2

    authors: Takizawa M,Sone S,Imai S,Sakai F,Imai Y,Maruyama A

    更新日期:1991-10-01 00:00:00

  • Models of subcutaneous insulin kinetics. A critical review.

    abstract::Subcutaneous insulin kinetics is a complex process whose quantitation is needed for a reliable glycemic control in the conventional therapy of insulin-dependent diabetes. The major difficulties in modeling include accounting for the distribution in the subcutaneous depot and transport to plasma. A single model describ...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章,评审

    doi:10.1016/s0169-2607(00)00071-7

    authors: Nucci G,Cobelli C

    更新日期:2000-07-01 00:00:00

  • A virtual environment to evaluate the arm volume for lymphedema affected patients.

    abstract:BACKGROUND AND OBJECTIVE:The paper presents a novel procedure based on 3D scanning and 3D modelling to automatically assess linear and volumetric measurements of an arm and to be further applied to patients affected by post breast cancer lymphedema. The aim is the creation of a virtual platform easily usable by medical...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2020.105795

    authors: Vitali A,Togni G,Regazzoni D,Rizzi C,Molinero G

    更新日期:2021-01-01 00:00:00

  • Amplitude-aware permutation entropy: Illustration in spike detection and signal segmentation.

    abstract:BACKGROUND AND OBJECTIVE:Signal segmentation and spike detection are two important biomedical signal processing applications. Often, non-stationary signals must be segmented into piece-wise stationary epochs or spikes need to be found among a background of noise before being further analyzed. Permutation entropy (PE) h...

    journal_title:Computer methods and programs in biomedicine

    pub_type: 杂志文章

    doi:10.1016/j.cmpb.2016.02.008

    authors: Azami H,Escudero J

    更新日期:2016-05-01 00:00:00