A Permutation-Randomization Approach to Test the Spatial Distribution of Plant Diseases.

Abstract:

:The analysis of the spatial distribution of plant diseases requires the availability of trustworthy geostatistical methods. The mean distance tests (MDT) are here proposed as a series of permutation and randomization tests to assess the spatial distribution of plant diseases when the variable of phytopathological interest is categorical. A user-friendly software to perform the tests is provided. Estimates of power and type I error, obtained with Monte Carlo simulations, showed the reliability of the MDT (power > 0.80; type I error < 0.05). A biological validation on the spatial distribution of spores of two fungal pathogens causing root rot on conifers was successfully performed by verifying the consistency between the MDT responses and previously published data. An application of the MDT was carried out to analyze the relation between the plantation density and the distribution of the infection of Gnomoniopsis castanea, an emerging fungal pathogen causing nut rot on sweet chestnut. Trees carrying nuts infected by the pathogen were randomly distributed in areas with different plantation densities, suggesting that the distribution of G. castanea was not related to the plantation density. The MDT could be used to analyze the spatial distribution of plant diseases both in agricultural and natural ecosystems.

journal_name

Phytopathology

journal_title

Phytopathology

authors

Lione G,Gonthier P

doi

10.1094/PHYTO-05-15-0112-R

subject

Has Abstract

pub_date

2016-01-01 00:00:00

pages

19-28

issue

1

eissn

0031-949X

issn

1943-7684

journal_volume

106

pub_type

杂志文章
  • Identification and Spread of Fomitiporia punctata Associated with Wood Decay of Grapevine Showing Symptoms of Esca.

    abstract::ABSTRACT A full understanding of the pathology of esca, a chronic disease of grapevines, has been problematic, in part because the identity of the pathogen (or pathogens) has been difficult to determine. The wood decay symptoms of esca have been most often associated with Phellinus igniarius or Fomitiporia punctata. H...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.2000.90.9.967

    authors: Cortesi P,Fischer M,Milgroom MG

    更新日期:2000-09-01 00:00:00

  • Genes for parasite-specific, nonhost resistance in populus.

    abstract::ABSTRACT Nonhost resistance is hypothesized to protect plants in a nonspecific manner. For highly specialized parasites, this hypothesis applies not only to distantly related plants but also to resistant congeners of the host species. Congeners of Populus spp. were hybridized to create two interspecific hybrid poplar ...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-95-0779

    authors: Newcombe G

    更新日期:2005-07-01 00:00:00

  • Detection of phytoplasma by polymerase chain reaction of insect feeding medium and its use in determining vectoring ability.

    abstract::A polymerase chain reaction (PCR)-based method was developed for the detection of phytoplasma in insect feeding medium (sucrose). A correlation was established between the transmissibility of Flavescence dorée phytoplasma in the experimental leafhopper vector Euscelidius variegatus and its detection by PCR in the inse...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.2001.91.8.741

    authors: Tanne E,Boudon-Padieu E,Clair D,Davidovich M,Melamed S,Klein M

    更新日期:2001-08-01 00:00:00

  • Epicuticular Wax and White Pine Blister Rust Resistance in Resistant and Susceptible Selections of Eastern White Pine (Pinus strobus).

    abstract::ABSTRACT Epicuticular wax on needles was evaluated for its influence on Cronartium ribicola infection of resistant and susceptible selections of Pinus strobus. Environmental scanning electron microscopy comparisons revealed that needles from a resistant selection of eastern white pine, P327, had a significantly higher...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-96-0171

    authors: Smith JA,Blanchette RA,Burnes TA,Gillman JH,David AJ

    更新日期:2006-02-01 00:00:00

  • Avirulence (AVR) Gene-Based Diagnosis Complements Existing Pathogen Surveillance Tools for Effective Deployment of Resistance (R) Genes Against Rice Blast Disease.

    abstract::Avirulence (AVR) genes in Magnaporthe oryzae, the fungal pathogen that causes the devastating rice blast disease, have been documented to be major targets subject to mutations to avoid recognition by resistance (R) genes. In this study, an AVR-gene-based diagnosis tool for determining the virulence spectrum of a rice ...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-12-16-0451-R

    authors: Selisana SM,Yanoria MJ,Quime B,Chaipanya C,Lu G,Opulencia R,Wang GL,Mitchell T,Correll J,Talbot NJ,Leung H,Zhou B

    更新日期:2017-06-01 00:00:00

  • Characterization of Putative Effectors from the Cereal Cyst Nematode Heterodera avenae.

    abstract::Few molecular details of effectors of Heterodera avenae parasitism are known. We performed a high-throughput sequencing analysis of the H. avenae transcriptome at five developmental stages. A total of 82,549 unigenes were ultimately obtained, and 747 transcripts showed best hits to genes putatively encoding carbohydra...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-07-17-0226-R

    authors: Cui JK,Peng H,Qiao F,Wang GF,Huang WK,Wu DQ,Peng D

    更新日期:2018-02-01 00:00:00

  • A Pectate Lyase Homolog, xagP, in Xanthomonas axonopodis pv. glycines Is Associated with Hypersensitive Response Induction on Tobacco.

    abstract::ABSTRACT Xanthomonas axonopodis pv. glycines is the causal agent of bacterial pustule disease of soybeans. A transposon insertional mutant (KU-P-M670) of X. axonopodis pv. glycines derived from wild-type strain KU-P-34017 lost the ability to induce the hypersensitive response (HR) on tobacco and pepper but retained it...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-96-1230

    authors: Kaewnum S,Prathuangwong S,Burr TJ

    更新日期:2006-11-01 00:00:00

  • A real-time PCR assay for detection and quantification of Verticillium dahliae in spinach seed.

    abstract::Verticillium dahliae is a soilborne fungus that causes Verticillium wilt on multiple crops in central coastal California. Although spinach crops grown in this region for fresh and processing commercial production do not display Verticillium wilt symptoms, spinach seeds produced in the United States or Europe are commo...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-10-11-0280

    authors: Duressa D,Rauscher G,Koike ST,Mou B,Hayes RJ,Maruthachalam K,Subbarao KV,Klosterman SJ

    更新日期:2012-04-01 00:00:00

  • Influence of take-all epidemics on winter wheat yield formation and yield loss.

    abstract::ABSTRACT The effects of take-all epidemics on winter wheat yield formation were determined, and disease-yield relationships were established to assess the agronomic efficacy and economic benefits of control methods. Epidemics were generated in naturally infested fields by varying cropping season, crop order in the rot...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.2001.91.7.694

    authors: Schoeny A,Jeuffroy MH,Lucas P

    更新日期:2001-07-01 00:00:00

  • Characterizing the mechanism of biological control of postharvest diseases on fruits with a simple method to study competition for nutrients.

    abstract::ABSTRACT Biocontrol agents may compete with pathogens for nutrients and space to delay or prevent decay of fruits after harvest. These mechanisms of biological control have been difficult to study because no method has been available to determine the significance of each of the components of competition. We developed ...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.2000.90.11.1196

    authors: Janisiewicz WJ,Tworkoski TJ,Sharer C

    更新日期:2000-11-01 00:00:00

  • One Cut to Change Them All: CRISPR/Cas, a Groundbreaking Tool for Genome Editing in Botrytis cinerea and Other Fungal Plant Pathogens.

    abstract::CRISPR/Cas is a genome editing technology that has opened new dimensions in functional biology. In a recent publication, we presented a highly efficient CRISPR/Cas technique for Botrytis cinerea, which dramatically increases our options to mutagenize and modify single or multiple genes. In this Perspectives article, w...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-09-20-0379-PER

    authors: Hahn M,Scalliet G

    更新日期:2021-01-29 00:00:00

  • Resistance of Wheat Genotypes to Root-Lesion Nematode (Pratylenchus thornei) Can be Used to Predict Final Nematode Population Densities, Crop Greenness, and Grain Yield in the Field.

    abstract::The root-lesion nematode Pratylenchus thornei is a major pathogen of wheat (Triticum aestivum) in many regions globally. Resistance of wheat genotypes to P. thornei can be determined from final nematode population densities in glasshouse experiments but combining results across multiple experiments presents challenges...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-06-19-0203-R

    authors: Thompson JP,Sheedy JG,Robinson NA

    更新日期:2020-02-01 00:00:00

  • Antibiosis and acidification by Pantoea agglomerans strain E325 may contribute to suppression of Erwinia amylovora.

    abstract::Pantoea agglomerans strain E325, a commercially available antagonist for fire blight of apple and pear, was originally selected through screening based on suppression of Erwinia amylovora on flower stigmas, but specific mechanisms of antagonism were unknown. Bacterial modification of pH was evaluated as a possible mec...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-98-10-1136

    authors: Pusey PL,Stockwell VO,Rudell DR

    更新日期:2008-10-01 00:00:00

  • Soybean sudden death syndrome species diversity within north and South america revealed by multilocus genotyping.

    abstract::Sudden death syndrome (SDS) of soybean has become a serious constraint to the production of this crop in North and South America. Phenotypic and multilocus molecular phylogenetic analyses, as well as pathogenicity experiments, have demonstrated that four morphologically and phylogenetically distinct fusaria can induce...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-100-1-0058

    authors: O'Donnell K,Sink S,Scandiani MM,Luque A,Colletto A,Biasoli M,Lenzi L,Salas G,González V,Ploper LD,Formento N,Pioli RN,Aoki T,Yang XB,Sarver BA

    更新日期:2010-01-01 00:00:00

  • Specific Diagnosis of Two Root-Knot Nematodes, Meloidogyne chitwoodi and M. fallax, with Satellite DNA Probes.

    abstract::ABSTRACT Meloidogyne chitwoodi and M. fallax are serious pests of potato, and both species have been recently designated as quarantine organisms in the European Community and in Canada. The sympatric and less damaging species M. hapla is often found associated with both of them under temperate climates. Here, we descr...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.1999.89.5.380

    authors: Castagnone-Sereno P,Leroy F,Bongiovanni M,Zijlstra C,Abad P

    更新日期:1999-05-01 00:00:00

  • Ultrastructural and Cytochemical Investigation of Asymptomatic Infection by Pythium spp.

    abstract::ABSTRACT The influence exerted by Pythium group F (a minor pathogen ubiquitous in soilless cultures) and P. uncinulatum (a nonpathogenic species) colonization on tomato roots was investigated. In both interactions, infected roots did not exhibit obvious symptoms; however, major physiological changes occurred within th...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.1998.88.3.234

    authors: Rey P,Benhamou N,Tirilly Y

    更新日期:1998-03-01 00:00:00

  • Inhibitory effects of antioxidant reagent in reactive oxygen species generation and penetration of appressoria of Alternaria alternata Japanese pear pathotype.

    abstract::In the Japanese pear pathotype of Alternaria alternata, H2O2 is generated solely from penetration pegs and not from other portions of subcuticular hyphae within the pectin layers of host leaves. A close association between H2O2 generation and fungal aggressiveness is expected because the pegs are important for fungal ...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-100-9-0840

    authors: Hyon GS,Ikeda K,Hosogi N,Shinogi T,Park P

    更新日期:2010-09-01 00:00:00

  • Blackleg sporacle: a model for predicting onset of pseudothecia maturity and seasonal ascospore showers in relation to blackleg of canola.

    abstract::ABSTRACT A simple model has been developed to predict the onset of pseudothecia maturity and seasonal ascospore showers in relation to blackleg disease in canola, caused by the fungus Leptosphaeria maculans. The model considers a combination of two weather factors, daily mean temperature and daily total rainfall, to d...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.2003.93.9.1073

    authors: Salam MU,Khangura RK,Diggle AJ,Barbetti MJ

    更新日期:2003-09-01 00:00:00

  • Effect of Fungicide Applications on Monilinia fructicola Population Diversity and Transposon Movement.

    abstract::In this study, we investigated whether fungicide-induced mutagenesis previously reported in Monilinia fructicola could accelerate genetic changes in field populations. Azoxystrobin and propiconazole were applied to nectarine trees at weekly intervals for approximately 3 months between bloom and harvest in both 2013 an...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-03-16-0127-R

    authors: Dowling ME,Bryson PK,Boatwright HG,Wilson JR,Fan Z,Everhart SE,Brannen PM,Schnabel G

    更新日期:2016-12-01 00:00:00

  • Mefenoxam Insensitivity and the Sexual Stage of Phytophthora capsici in Michigan Cucurbit Fields.

    abstract::ABSTRACT The potential for outcrossing, occurrence of oospores, and inheritance of mefenoxam sensitivity was assessed in naturally occurring populations of Phytophthora capsici. Between 1997 and 1998, 14 farms were sampled, with 473 isolates recovered from cucurbit hosts and 30 from bell pepper. The A1 and A2 compatib...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.2000.90.4.396

    authors: Lamour KH,Hausbeck MK

    更新日期:2000-04-01 00:00:00

  • Multiplex Polymerase Chain Reaction Identification of Single Individuals of the Longidorid Nematodes Xiphinema index, X. diversicaudatum, X. vuittenezi, and X. italiae Using Specific Primers from Ribosomal Genes.

    abstract::ABSTRACT The species X. index, X. diversicaudatum, X. vuittenezi, and X. italiae are established (E) or putative (P) vectors of Grapevine fanleaf virus (GFLV) (E), Arabis mosaic virus (E), Grapevine chrome mosaic virus (P), and GFLV (P) nepoviruses of grapevine, respectively. All four species are very closely related ...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.2003.93.2.160

    authors: Wang X,Bosselut N,Castagnone C,Voisin R,Abad P,Esmenjaud D

    更新日期:2003-02-01 00:00:00

  • Purification and Biological Characterization of Host-Specific SV-Toxins from Stemphylium vesicarium Causing Brown Spot of European Pear.

    abstract::ABSTRACT Culture filtrates of a pathogenic isolate (IT37) of Stemphylium vesicarium, causing brown spot of European pear, induced veinal necrosis only on pear leaves susceptible to the pathogen. Two host-specific toxins, SV-toxins I and II, were purified from culture filtrates of IT37 by successively using Amberlite X...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.1999.89.10.947

    authors: Singh P,Bugiani R,Cavanni P,Nakajima H,Kodama M,Otani H,Kohmoto K

    更新日期:1999-10-01 00:00:00

  • Predicting Ascospore Release of Monilinia vaccinii-corymbosi of Blueberry with Machine Learning.

    abstract::Mummy berry, caused by Monilinia vaccinii-corymbosi, causes economic losses of highbush blueberry in the U.S. Pacific Northwest (PNW). Apothecia develop from mummified berries overwintering on soil surfaces and produce ascospores that infect tissue emerging from floral and vegetative buds. Disease control currently re...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-04-17-0162-R

    authors: Harteveld DOC,Grant MR,Pscheidt JW,Peever TL

    更新日期:2017-11-01 00:00:00

  • Host range, biological variation, and phylogenetic diversity of Eutypa lata in California.

    abstract::The objectives of this study were to investigate the host range of Eutypa lata in the major grape-growing regions in California and to analyze the phenotypic variation and phylogenetic diversity of E. lata isolates. Perithecia of E. lata were found on grapevines, in apricot, almond, cherry, apple, and pear tree orchar...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-02-10-0040

    authors: Trouillas FP,Gubler WD

    更新日期:2010-10-01 00:00:00

  • Epidemiology of soybean vein necrosis-associated virus.

    abstract::Soybean vein necrosis-associated virus has been linked to an emerging soybean disease in the United States and Canada. Virus distribution and population structure in major growing areas were evaluated. Data were employed to design and develop sensitive detection protocols, able to detect all virus isolates available i...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-12-12-0322-R

    authors: Zhou J,Tzanetakis IE

    更新日期:2013-09-01 00:00:00

  • Genetic Structure of Magnaporthe grisea Populations Associated with St. Augustinegrass and Tall Fescue in Georgia.

    abstract::ABSTRACT Amplified fragment length polymorphisms (AFLPs) were used to estimate phylogenetic relationships within Magnaporthe grisea and determine the genetic structure of M. grisea populations associated with tall fescue and St. Augustinegrass in Georgia. Sixteen clonal lineages were identified in a sample population ...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-95-0463

    authors: Tredway LP,Stevenson KL,Burpee LL

    更新日期:2005-05-01 00:00:00

  • Host Gamma Aminobutyric Acid Metabolic Pathway is involved in Resistance against Rhizoctonia solani.

    abstract::Rhizoctonia solani is a highly destructive necrotrophic fungal pathogen having a diverse host range, including rice and tomato. Previously R. solani infection in rice has been found to cause large-scale readjustment in host primary metabolism and accumulation of various stress associated metabolites such as gamma amin...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-08-20-0356-R

    authors: Rani M,Jha G

    更新日期:2020-12-15 00:00:00

  • VirE1-Mediated Resistance to Crown Gall in Transgenic Arabidopsis thaliana.

    abstract::ABSTRACT Crown gall disease, caused by Agrobacterium tumefaciens, remains a serious agricultural problem despite current biocontrol methods. Agrobacterium tumefaciens transfers single-stranded DNA (T-strands) into plant cells along with several virulence proteins, including a single-stranded DNA-binding protein (VirE2...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO-96-0105

    authors: Humann J,Andrews S,Ream W

    更新日期:2006-01-01 00:00:00

  • Weakening and Delayed Mortality of Fusarium oxysporum by Heat Treatment: Flow Cytometry and Growth Studies.

    abstract::ABSTRACT Survival of Fusarium oxysporum f. sp. niveum following heat treatments was studied using flow cytometric, physiological, and microscopic assays. We exposed germinating conidia to sublethal temperatures from 36 to 42 degrees C for 60 min, followed by rhodamine 123 staining and flow cytometry, and found increas...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.2002.92.9.956

    authors: Assaraf MP,Ginzburg C,Katan J

    更新日期:2002-09-01 00:00:00

  • Detection and Quantification of Resistance of Venturia inaequalis Populations to Sterol Demethylation Inhibitors.

    abstract::ABSTRACT Monoconidial isolates of Venturia inaequalis were collected in 1990 and 1991 from orchards in New York, Michigan, and Nova Scotia that had never or only sporadically been treated with fungicides acting as sterol demethylation inhibitors (DMIs). Sensitivities of isolates to two representative DMIs (fenarimol a...

    journal_title:Phytopathology

    pub_type: 杂志文章

    doi:10.1094/PHYTO.1997.87.2.184

    authors: Köller W,Wilcox WF,Barnard J,Jones AL,Braun PG

    更新日期:1997-02-01 00:00:00