The in planta proteome of wild type strains of the fire blight pathogen, Erwinia amylovora.

Abstract:

UNLABELLED:Erwinia amylovora is a Gram-negative plant pathogen that causes fire blight. This disease affects most members of the Rosaceae family including apple and pear. Here, an infection model is introduced to study proteomic changes in a highly virulent E. amylovora strain upon interaction with its host as compared to a lower virulent strain. For this purpose separate shoots of apple rootstocks were wound-infected and when infection became systemic, bacterial cells were isolated and processed for analysis in a proteomics platform combining 2-D fluorescence difference gel electrophoresis and mass spectrometry. Comparing the proteome of the isolates, significant abundance changes were observed in proteins involved in sorbitol metabolism, amylovoran production as well as in protection against plant defense mechanisms. Furthermore several proteins associated with virulence were more abundant in the higher virulent strain. Changes at the proteome level showed good accordance at the transcript level, as was verified by RT-qPCR. In conclusion, this infection model may be a valuable tool to unravel the complexity of plant-pathogen interactions and to gain insight in the molecular mechanisms associated with virulence of E. amylovora, paving the way for the development of plant-protective interventions against this detrimental disease. SIGNIFICANCE:During this research a first time investigation was performed on the proteome of E. amylovora, grown inside a susceptible host plant. This bacterium is the causal agent of fire blight, which can affect most members of the Rosaceae family including apple and pear. To do so, an artificial infection model on shoots of apple rootstocks was optimized and employed. When infection was systemic, bacterial cells were extracted from the plant tissue followed by extraction of the proteins from the bacteria. Further processing of the proteins was done by using a 2-D fluorescence difference gel electrophoresis analysis followed by mass spectrometry. By the use of two strains differing in their virulent ability, we were able to draw conclusions concerning virulence and behavior of different strains inside the host. This research provides a model to investigate plant-pathogen interactions and more importantly, we identified possible new targets for the development of novel control methods against this devastating disease.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Holtappels M,Vrancken K,Noben JP,Remans T,Schoofs H,Deckers T,Valcke R

doi

10.1016/j.jprot.2016.02.018

subject

Has Abstract

pub_date

2016-04-29 00:00:00

pages

1-12

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(16)30034-3

journal_volume

139

pub_type

杂志文章
  • An in-depth snake venom proteopeptidome characterization: Benchmarking Bothrops jararaca.

    abstract::A large-scale proteomic approach was devised to advance the understanding of venom composition. Bothrops jararaca venom was fractionated by OFFGEL followed by chromatography, generating peptidic and proteic fractions. The latter was submitted to trypsin digestion. Both fractions were separately analyzed by reversed-ph...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.06.029

    authors: Nicolau CA,Carvalho PC,Junqueira-de-Azevedo IL,Teixeira-Ferreira A,Junqueira M,Perales J,Neves-Ferreira AG,Valente RH

    更新日期:2017-01-16 00:00:00

  • Profiling of local disease-sparing responses to bovine respiratory syncytial virus in intranasally vaccinated and challenged calves.

    abstract::Bovine and human respiratory syncytial viruses (BRSV, HRSV) are primary causes of pneumonia in calves and children respectively, with vaccination offering protection via antibody and cellular immune responses. However, with no vaccines currently licensed for human use, evaluation of local responses to BRSV vaccination...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103397

    authors: Gray D,Ellis JA,Gow SP,Lacoste SR,Allan GM,Mooney MH

    更新日期:2019-07-30 00:00:00

  • Identification of nephropathy predictors in urine from children with a recent diagnosis of type 1 diabetes.

    abstract::Despite research progresses, the chance to accurately predict the risk for diabetic nephropathy (DN) is still poor. So far, the first evidence of DN is micro-albuminuria, which is detected only 10-20 years after the onset of diabetes. Our goal is to develop new predictive tools of nephropathy starting from urine, whic...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2018.10.010

    authors: Magagnotti C,Zerbini G,Fermo I,Carletti RM,Bonfanti R,Vallone F,Andolfo A

    更新日期:2019-02-20 00:00:00

  • Nuclear proteome analysis reveals a role of Vav1 in modulating RNA processing during maturation of tumoral promyelocytes.

    abstract::Vav1 is a key molecule in the ATRA-induced acquisition of a mature phenotype by tumoral myeloid precursors. Since ATRA acts throughout events that require extensive changes of nuclear architecture and activity and considering that Vav1 accumulates inside the nuclear compartment of differentiating APL-derived cells, th...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.08.005

    authors: Bertagnolo V,Grassilli S,Petretto A,Lambertini E,Astati L,Bruschi M,Brugnoli F,Nika E,Candiano G,Piva R,Capitani S

    更新日期:2011-12-21 00:00:00

  • Proteomic changes in Arthrobotrys oligospora conidia in response to benzaldehyde-induced fungistatic stress.

    abstract::Soil fungistasis limits the effect of fungal agents designed to control plant-parasitic nematodes. Benzaldehyde is a fungistatic factor produced by soil microorganisms that can suppress conidial germination, but the molecular mechanism of this suppression is unknown. In this study, three conidial proteomes of Arthrobo...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.09.016

    authors: Liu T,Zou LJ,Tian DW,Can QY,Zhu ML,Mo MH,Zhang KQ

    更新日期:2019-02-10 00:00:00

  • Proteomic biomarkers for psoriasis and psoriasis arthritis.

    abstract:UNLABELLED:Although several new biomarkers have been recently proposed for psoriasis (Ps) and psoriasis arthritis (PsA), nothing is known about their diagnostic sensitivity and specificity, and their routine use. We therefore searched in-depth for new biomarker candidates using a biobank with EDTA-plasma from 158 indiv...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.03.040

    authors: Reindl J,Pesek J,Krüger T,Wendler S,Nemitz S,Muckova P,Büchler R,Opitz S,Krieg N,Norgauer J,Rhode H

    更新日期:2016-05-17 00:00:00

  • Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells.

    abstract::The yeast Saccharomyces cerevisiae is able to grow under aerobic as well as anaerobic conditions. We and others previously found that transcription levels of approximately 500 genes differed more than two-fold when cells from anaerobic and aerobic conditions were compared. Here, we addressed the effect of anaerobic gr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.11.012

    authors: Bruckmann A,Hensbergen PJ,Balog CI,Deelder AM,Brandt R,Snoek IS,Steensma HY,van Heusden GP

    更新日期:2009-01-30 00:00:00

  • Inferring Plasmodium vivax protein biology by using omics data.

    abstract::Deciphering Plasmodium vivax biology has long been a challenge for groups working on this parasite, mainly due to the complications involved in propagating it in vitro. However, adapting P. vivax strains in non-human primates and the arrival of high-performance analysis methods has led to increased knowledge regarding...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2020.103719

    authors: Moreno-Pérez DA,Patarroyo MA

    更新日期:2020-04-30 00:00:00

  • ITRAQ-based quantitative proteomic analysis of MG63 in response to HIF-1α inducers.

    abstract::Non-healing fractures constitute a serious clinical problem. HIF-1α is a crucial regulator in response to hypoxia and is proven to be pivotal in bone growth; however, the mechanism still needs further research. In this study, iTRAQ was used to study the effects of two HIF-1α inducers on the expression of proteins in M...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103558

    authors: Chen C,Hao X,Geng Z,Wang Z

    更新日期:2020-01-16 00:00:00

  • Characterizations and proteome analysis of platelet-free plasma-derived microparticles in β-thalassemia/hemoglobin E patients.

    abstract::Aggregatability and oxidative damage of red blood cells (RBCs), platelet activation and increased amount of blood cells-derived microparticles (MPs) are thought to be the etiologies for the thrombotic risk in thalassemia, but with unclear mechanisms. Here we report cellular origins and increases in number, oxidative s...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2012.06.004

    authors: Chaichompoo P,Kumya P,Khowawisetsut L,Chiangjong W,Chaiyarit S,Pongsakul N,Sirithanaratanakul N,Fucharoen S,Thongboonkerd V,Pattanapanyasat K

    更新日期:2012-12-05 00:00:00

  • Integrated physiological and chloroplast proteome analysis of wheat seedling leaves under salt and osmotic stresses.

    abstract::In this study, we performed an integrated physiological and chloroplast proteome analysis of wheat seedling leaves under salt and osmotic stresses by label-free based quantitative proteomic approach. Both salt and osmotic stresses significantly increased the levels of abscisic acid and methyl jasmonate and led to dama...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104097

    authors: Zhu D,Luo F,Zou R,Liu J,Yan Y

    更新日期:2021-03-15 00:00:00

  • Proteomic analysis and protein carbonylation profile in trained and untrained rat muscles.

    abstract::Understanding the relationship between physical exercise, reactive oxygen species and skeletal muscle modification is important in order to better identify the benefits or the damages that appropriate or inappropriate exercise can induce. Unbalanced ROS levels can lead to oxidation of cellular macromolecules and a maj...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.10.017

    authors: Magherini F,Abruzzo PM,Puglia M,Bini L,Gamberi T,Esposito F,Veicsteinas A,Marini M,Fiorillo C,Gulisano M,Modesti A

    更新日期:2012-01-04 00:00:00

  • pI-based fractionation of serum proteomes versus anion exchange after enhancement of low-abundance proteins by means of peptide libraries.

    abstract::The pre-treatment of biological extracts with the aim of detecting very low-abundance proteins generates complexity requiring a proper fractionation. Therefore the success of identifying all newly detectable species depends on the selected fractionation methods. In this context and starting from a human serum, where t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2009.06.014

    authors: Restuccia U,Boschetti E,Fasoli E,Fortis F,Guerrier L,Bachi A,Kravchuk AV,Righetti PG

    更新日期:2009-08-20 00:00:00

  • The identification and characterization of epitopes in the 30-34 kDa Trypanosoma cruzi proteins recognized by antibodies in the serum samples of chagasic patients.

    abstract::Trypanosoma cruzi proteins with molecular weight between 30 and 34 kDa have shown high reactivity in western blot assays with serum samples from chagasic individuals. However, in-depth analysis of the constituents of these protein fractions has not been performed. This is the first report of an immunoaffinity proteomi...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.11.001

    authors: Verissimo da Costa GC,Lery LM,da Silva ML,Moura H,Peralta RH,von Krüger WM,Bisch PM,Barr JR,Peralta JM

    更新日期:2013-03-27 00:00:00

  • Leaf proteome profiling of transgenic mint infected with Alternaria alternata.

    abstract:UNLABELLED:The genus Mentha has been widely used in food, flavor, culinary, cosmetic and pharmaceutical industries. Substantial damage to this crop happened regularly due to environmental stresses like metal toxicity and pathogen attack. Here, an approach has been taken to raise transgenic mint over-expressing γ-glutam...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.01.020

    authors: Sinha R,Bhattacharyya D,Majumdar AB,Datta R,Hazra S,Chattopadhyay S

    更新日期:2013-11-20 00:00:00

  • Proteome and phosphoproteome analysis of commensally induced dendritic cell maturation states.

    abstract::Dendritic cells (DCs) can shape the immune system towards an inflammatory or tolerant state depending on the bacterial antigens and the environment they encounter. In this study we provide a proteomic catalogue of differentially expressed proteins between distinct DC maturation states, brought about by bacteria that d...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.11.008

    authors: Korkmaz AG,Popov T,Peisl L,Codrea MC,Nahnsen S,Steimle A,Velic A,Macek B,von Bergen M,Bernhardt J,Frick JS

    更新日期:2018-05-30 00:00:00

  • The olfactory bulb proteotype differs across frontotemporal dementia spectrum.

    abstract::Mild olfactory dysfunction has been observed in frontotemporal dementias (FTD). However, the underlying molecular mechanisms associated to this deficit are poorly understood. We applied quantitative proteomics to analyze pathological effects on the olfactory bulb (OB) from progressive supranuclear palsy (PSP) and fron...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2019.04.011

    authors: Lachén-Montes M,González-Morales A,Schvartz D,Zelaya MV,Ausin K,Fernández-Irigoyen J,Sánchez JC,Santamaría E

    更新日期:2019-06-15 00:00:00

  • Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells.

    abstract::Myristic acid, the 14-carbon saturated fatty acid (C14:0), is associated to an increased cardiovascular disease risk. Since it is found in low concentration in cells, its specific properties have not been fully analyzed. The aim of this study was to explore the cell response to this fatty acid to help explaining clini...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.04.008

    authors: Speziali G,Liesinger L,Gindlhuber J,Leopold C,Pucher B,Brandi J,Castagna A,Tomin T,Krenn P,Thallinger GG,Olivieri O,Martinelli N,Kratky D,Schittmayer M,Birner-Gruenberger R,Cecconi D

    更新日期:2018-06-15 00:00:00

  • Comparative proteomic analysis of BTH and BABA-induced resistance in pea (Pisum sativum) toward infection with pea rust (Uromyces pisi).

    abstract::Systemic acquired resistance (SAR) to Uromyces pisi in pea was studied by using a proteomic approach. Two-dimensional electrophoresis (2-DE) was used in order to compare the leaf proteome of two pea genotypes displaying different phenotypes (susceptible and partial resistance to the fungus), and in response to parasit...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.06.033

    authors: Barilli E,Rubiales D,Castillejo MÁ

    更新日期:2012-09-18 00:00:00

  • Identification of novel interacting partners of the NEDD4 ubiquitin ligase in mouse testis.

    abstract::Posttranslational modification by ubiquitination targets proteins for degradation, recycling, stabilization or altered trafficking, and as such can alter cellular signaling pathways. The substrate specificity of this multistep process is controlled by ubiquitin ligases, including those of the HECT domain-containing NE...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103830

    authors: Manning J,Windley SP,Sandow JJ,Shah SS,Western P,Wilhelm D,Kumar S

    更新日期:2020-07-15 00:00:00

  • Proteomic analysis of Chlorella vulgaris: potential targets for enhanced lipid accumulation.

    abstract:UNLABELLED:Oleaginous microalgae are capable of producing large quantities of fatty acids and triacylglycerides. As such, they are promising feedstocks for the production of biofuels and bioproducts. Genetic strain-engineering strategies offer a means to accelerate the commercialization of algal biofuels by improving t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.05.025

    authors: Guarnieri MT,Nag A,Yang S,Pienkos PT

    更新日期:2013-11-20 00:00:00

  • Deciphering the molecular mechanisms underlying sea urchin reversible adhesion: A quantitative proteomics approach.

    abstract:UNLABELLED:Marine bioadhesives have unmatched performances in wet environments, being an inspiration for biomedical applications. In sea urchins specialized adhesive organs, tube feet, mediate reversible adhesion, being composed by a disc, producing adhesive and de-adhesive secretions, and a motile stem. After tube foo...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.02.026

    authors: Lebesgue N,da Costa G,Ribeiro RM,Ribeiro-Silva C,Martins GG,Matranga V,Scholten A,Cordeiro C,Heck AJ,Santos R

    更新日期:2016-04-14 00:00:00

  • Neuronal porosome proteome: Molecular dynamics and architecture.

    abstract::Porosomes are the universal secretory portals at the cell plasma membrane, where membrane-bound secretory vesicles transiently dock and fuse to expel intravesicular contents to the outside during cell secretion. In the past decade, the neuronal porosome complex, a 10-15nm cup-shaped lipoprotein structure has been isol...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.05.017

    authors: Lee JS,Jeremic A,Shin L,Cho WJ,Chen X,Jena BP

    更新日期:2012-07-16 00:00:00

  • Protein profiling identified dissociations between growth hormone-mediated longitudinal growth and bone mineralization in short prepubertal children.

    abstract::Growth hormone (GH) promotes longitudinal growth and bone mineralization. In this study, a proteomic approach was used to analyze the association between serum protein expression pattern and height-adjusted bone mineralization in short prepubertal children receiving GH treatment. Patterns of protein expression were co...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.08.007

    authors: Andersson B,Decker R,Nierop AF,Bosaeus I,Albertsson-Wikland K,Hellgren G

    更新日期:2011-01-01 00:00:00

  • Proteomics analysis reveals multiple regulatory mechanisms in response to selenium in rice.

    abstract::Selenium (Se) shows both beneficial and toxic effects on plant growth. Rice (Oryza sativa L.) seedlings cultivated under lower concentrations of sodium selenite showed enhanced growth, whereas higher concentrations of sodium selenite repressed seedling growth. To acquire detailed regulatory mechanisms underlying these...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.12.030

    authors: Wang YD,Wang X,Wong YS

    更新日期:2012-03-16 00:00:00

  • The mammary gland in domestic ruminants: a systems biology perspective.

    abstract:UNLABELLED:Milk and dairy products are central elements in the human diet. It is estimated that 108kg of milk per year are consumed per person worldwide. Therefore, dairy production represents a relevant fraction of the economies of many countries, being cattle, sheep, goat, water buffalo, and other ruminants the main ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.09.012

    authors: Ferreira AM,Bislev SL,Bendixen E,Almeida AM

    更新日期:2013-12-06 00:00:00

  • Drug localization in different lung cancer phenotypes by MALDI mass spectrometry imaging.

    abstract::Lung cancer is a common cause of cancer mortality in the world, largely due to the risk factor of tobacco smoking. The drug therapy at the molecular level includes targeting the epidermal growth factor receptor (EGFR) tyrosine kinase activity by using inhibitors, such as erlotinib (Tarceva) and gefitinib (Iressa). The...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.03.019

    authors: Marko-Varga G,Fehniger TE,Rezeli M,Döme B,Laurell T,Végvári A

    更新日期:2011-06-10 00:00:00

  • Beyond single modification: Reanalysis of the acetylproteome of human sperm reveals widespread multiple modifications.

    abstract::Sperm is an ideal model for studying post-translational modifications since its transcriptional and translational activities are nearly silent. Thus, sperm functions are mainly regulated at the protein level, especially by means of post-translational modifications. Published proteomic datasets may contain valuable und...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.05.022

    authors: Zhou T,Xia X,Liu J,Wang G,Guo Y,Guo X,Wang X,Sha J

    更新日期:2015-08-03 00:00:00

  • Development of liquid microjunction extraction strategy for improving protein identification from tissue sections.

    abstract::MALDI Mass Spectrometry Imaging has shown important potential for molecular classification and pathology marker discovery. Protein markers identification is therefore of prime importance. Direct structural analysis from tissue sections has shown limitations for protein identification because of the high degree of comp...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.11.025

    authors: Quanico J,Franck J,Dauly C,Strupat K,Dupuy J,Day R,Salzet M,Fournier I,Wisztorski M

    更新日期:2013-02-21 00:00:00

  • From pH to MALDI-TOF: hundreds of spotted opportunities?

    abstract::Current protocols for quality assurance of platelet concentrates used in transfusion therapy include evaluation of platelet count and pH, in vitro measurements of platelet lysis, membrane activation and microparticle release and assays of platelet ability to respond to aggregation stimuli and to hypotonic shock. Unfor...

    journal_title:Journal of proteomics

    pub_type: 社论,评审

    doi:10.1016/j.jprot.2012.07.044

    authors: Rebulla P

    更新日期:2012-12-05 00:00:00