Bringing It All Together: Coupling Excision Repair to the DNA Damage Checkpoint.

Abstract:

:Nucleotide excision repair and the ATR-mediated DNA damage checkpoint are two critical cellular responses to the genotoxic stress induced by ultraviolet (UV) light and are important for cancer prevention. In vivo genetic data indicate that these global responses are coupled. Aziz Sancar et al. developed an in vitro coupled repair-checkpoint system to analyze the basic steps of these DNA damage stress responses in a biochemically defined system. The minimum set of factors essential for repair-checkpoint coupling include damaged DNA, the excision repair factors (XPA, XPC, XPF-ERCC1, XPG, TFIIH, RPA), the 5'-3' exonuclease EXO1, and the damage checkpoint proteins ATR-ATRIP and TopBP1. This coupled repair-checkpoint system was used to demonstrate that the ~30 nucleotide single-stranded DNA (ssDNA) gap generated by nucleotide excision repair is enlarged by EXO1 and bound by RPA to generate the signal that activates ATR.

journal_name

Photochem Photobiol

authors

Lindsey-Boltz LA

doi

10.1111/php.12667

subject

Has Abstract

pub_date

2017-01-01 00:00:00

pages

238-244

issue

1

eissn

0031-8655

issn

1751-1097

journal_volume

93

pub_type

杂志文章,评审
  • Relation of Photochemical Internalization to Heat, pH and Ca2+ Ions.

    abstract::The inefficient endosomal escape of drugs or macromolecules is a major obstacle to achieving successful delivery to therapeutic targets. An efficient approach to circumvent this barrier is photochemical internalization (PCI), which uses light and photosensitizers for endosomal escape of the delivered macromolecules. T...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/php.13146

    authors: Soe TH,Nanjo T,Watanabe K,Ohtsuki T

    更新日期:2019-11-01 00:00:00

  • Inhibition of DNA polymerization and antifungal specificity of furanocoumarins present in traditional medicines.

    abstract::Antifungal activity is positively correlated to furanocoumarin content in extracts of the traditional phytomedicine northern prickly ash (Zanthoxylum americanum Mill. [Rutaceae]). The specificity of these furanocoumarins in inhibiting replication of DNA was investigated with reference to significant base composition d...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/2003-12-10-ra.1

    authors: Smith ML,Gregory P,Bafi-Yeboa NF,Arnason JT

    更新日期:2004-06-01 00:00:00

  • Photophysics of melatonin in different environments.

    abstract::Melatonin (N-acetyl-5-methoxytryptamine) is a naturally occurring hormone with a structural resemblance to tryptophan. Its fluorescence is solvent dependent and strongly quenched in the presence of oxygen. Fluorescence quenching in aqueous and organic solutions have been studied in the presence of different quenchers....

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/0031-8655(1999)069<0294:pomide>2.3.co;2

    authors: Rath MC,Mahal HS,Mukherjee T

    更新日期:1999-03-01 00:00:00

  • Simplified calibration for broadband solar ultraviolet radiation measurements.

    abstract::Aspects of different calibration procedures for erythemally weighing broadband radiometers are presented in this study. These instruments are common in projects dealing with ultraviolet radiation effects on humans. Many erythemally weighing broadband radiometers are still operated using a single calibration factor (cf...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/0031-8655(2003)078<0603:SCFBSU>2.0.CO;2

    authors: Oppenrieder A,Hoeppe P,Koepke P,Reuder J,Schween J,Schreder J

    更新日期:2003-12-01 00:00:00

  • NLOphoric Triphenylamine Derived Donor-π-Acceptor-π-Donor Based Colorants: Synthesis, Spectroscopic, Density Functional Theory and Z-scan Studies.

    abstract::Three Donor-π-Acceptor-π-Donor type styryl dyes (5a-c) with different secondary donors are synthesized and characterized to study their nonlinear and linear optical properties. The structure-property relationships of the dyes are described in the light of systematic photophysical and theoretical investigations. The ph...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/php.13089

    authors: Raikwar MM,Mathew E,Varghese M,Joe IH,Nethi SN

    更新日期:2019-07-01 00:00:00

  • Resolution of the individual tryptophanyl contributions to the near-ultraviolet dichroic activity of apomyoglobin.

    abstract::The individual tryptophanyl contributions to the near-ultraviolet dichroic activity of apomyoglobin in its native conformation have been resolved. This was accomplished by comparing the spectra of two classes of apomyoglobin with different aromatic residue contents and observing the effect of a specific modification o...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.1994.tb09664.x

    authors: Sirangelo I,Irace G,Bismuto E

    更新日期:1994-06-01 00:00:00

  • Interaction between N-terminal loop and beta-scaffold of photoactive yellow protein.

    abstract::During the photoreaction cycle of photoactive yellow protein (PYP), a physiologically active intermediate (PYP(M)) is formed as a consequence of global protein conformational change. Previous studies have demonstrated that the photocycle of PYP is regulated by the N-terminal loop region, which is located across the ce...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.2008.00375.x

    authors: Harigai M,Kataoka M,Imamoto Y

    更新日期:2008-07-01 00:00:00

  • Diastereoselectivity and site dependency in the photochemistry of ketoprofen in the bovine serum albumin matrix.

    abstract::The photodegradation of the S(+)- and R(-)-ketoprofen (KP) enantiomers in the bovine serum albumin matrix was studied by steady-state photolysis with the use of lambda(irr) > 320 nm and transient absorption spectroscopy with lambda(exc) = 355 nm, at 1/1 and 2/1 KP/BSA molar ratios. R(-)-KP was found to be more labile ...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/2005-07-11-RA-608

    authors: Monti S,Manet I,Manoli F,Morrone R,Nicolosi G,Sortino S

    更新日期:2006-01-01 00:00:00

  • Constraints of opsin structure on the ligand-binding site: studies with ring-fused retinals.

    abstract::Ring-fused retinal analogs were designed to examine the hula-twist mode of the photoisomerization of the 9-cis retinylidene chromophore. Two 9-cis retinal analogs, the C11-C13 five-membered ring-fused and the C12-C14 five-membered ring-fused retinal derivatives, formed the pigments with opsin. The C11-C13 ring-fused a...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/0031-8655(2002)076<0606:coosot>2.0.co;2

    authors: Hirano T,Lim IT,Kim DM,Zheng XG,Yoshihara K,Oyama Y,Imai H,Shichida Y,Ishiguro M

    更新日期:2002-12-01 00:00:00

  • Photoreduction and ketone-sensitized reduction of alkaloids.

    abstract::The photoprocesses of berberine, palmatine, coralyne, sanguinarine, flavopereirine and ellipticine were studied in several solvents. The quantum yields Φ(Δ) of singlet molecular oxygen formation of berberine, palmatine and sanguinarine are moderate in dichloromethane (0.2-0.6) and much smaller in acetonitrile or trifl...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.2010.00880.x

    authors: Görner H,Miskolczy Z,Megyesi M,Biczók L

    更新日期:2011-03-01 00:00:00

  • Quantum efficiencies of the reversible photoreaction of octopus rhodopsin.

    abstract::The classic method of photometric curves for photosensitivity determination has been extended to the case of photoreversible reactions and applied to the octopus rhodopsin --> acid metarhodopsin photoreaction. In such cases, measurements at one irradiation wavelength yield the sum of the photosensitivities of the forw...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.1987.tb04744.x

    authors: Dixon SF,Cooper A

    更新日期:1987-07-01 00:00:00

  • DNA damage checkpoint responses in the S phase of synchronized diploid human fibroblasts.

    abstract::We investigated the hypothesis that the strength of the activation of the intra-S DNA damage checkpoint varies within the S phase. Synchronized diploid human fibroblasts were exposed to either 0 or 2.5 J m(-2) UVC in early, mid- and late-S phase. The endpoints measured were the following: (1) radio-resistant DNA synth...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/php.12361

    authors: Chastain PD 2nd,Brylawski BP,Zhou YC,Rao S,Chu H,Ibrahim JG,Kaufmann WK,Cordeiro-Stone M

    更新日期:2015-01-01 00:00:00

  • Functional insights gained from structural analyses of DNA duplexes that contain UV-damaged photoproducts.

    abstract::Ultraviolet photolesions endow DNA with distinct structural and dynamic properties. Biophysical studies of photoproduct-containing DNA have shown that these lesions affect the mutagenic properties of DNA and damage recognition by DNA repair systems. Recently obtained high-resolution cocrystal structures of damaged DNA...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章,评审

    doi:10.1562/2006-02-28-IR-820

    authors: Park CJ,Lee JH,Choi BS

    更新日期:2007-01-01 00:00:00

  • Damage to DNA in bacterioplankton: a model of damage by ultraviolet radiation and its repair as influenced by vertical mixing.

    abstract::A model of UV-induced DNA damage in oceanic bacterioplankton was developed and tested against previously published and novel measurements of cyclobutane pyrimidine dimers (CPD) in surface layers of the ocean. The model describes the effects of solar irradiance, wind-forced mixing of bacterioplankton and optical proper...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/0031-8655(2000)072<0062:dtdiba>2.0.co;2

    authors: Huot Y,Jeffrey WH,Davis RF,Cullen JJ

    更新日期:2000-07-01 00:00:00

  • On the evidence from high-intensity two-photon laser photolysis for energy transfer from high-lying quasi-Rydberg states of thymine to iso-energetic states of water.

    abstract::High intensity two-photon picosecond excitation at 266 nm (effective energy 9.2 eV) has been shown to cause efficient photolysis of thymine in aqueous solution. Experimental results for the quantum yield of solvated electrons, phi (eaq-), and the net consumption of thymine, phi(-Thy) have been interpreted (Oraevsky an...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.1991.tb01996.x

    authors: Daniels M

    更新日期:1991-07-01 00:00:00

  • Use of potassium iodide as a chemical actinometer.

    abstract::Aqueous solutions of KI were examined for use as chemical actinometers to measure 254 nm (germicidal) radiation. Irradiation results in electron ejection from iodide such that aqueous electrons and iodine atoms are formed. In the presence of N2O, an electron scavenger, recombination of these two reactive species is el...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.1993.tb04986.x

    authors: Rahn RO

    更新日期:1993-12-01 00:00:00

  • Do melanoidins induced by topical 9% dihydroxyacetone sunless tanning spray inhibit vitamin d production? A pilot study.

    abstract::We report here preliminary pilot study data of the effect of sunless tanning spray with 9% [Correction added after online publication (August 24th, 2009): The concentration of Dihydroxyacetone used in the study was 9% and not 3% as previously stated] dihydroxyacetone (DHA) on 25-hydroxyvitamin D [25(OH)D] serum levels...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.2009.00574.x

    authors: Armas LA,Fusaro RM,Sayre RM,Huerter CJ,Heaney RP

    更新日期:2009-09-01 00:00:00

  • Do years or quanta age the retina?

    abstract::The progressive loss of visual faculties with advancing age is attributed, sometimes, mainly to allegedly inevitable optical deterioration, such as clouding of the media, or again to neurosenescence, as typified by cell-death. The relevant factors are assessed, and it is not thought likely that changes in normal ocula...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1751-1097.1989.tb04181.x

    authors: Weale RA

    更新日期:1989-09-01 00:00:00

  • Analysis of phosphorescence decay in heterogeneous systems: consequences of finite excitation flash duration.

    abstract::Analysis of phosphorescence lifetimes using the Stern-Volmer equation is a reliable means of determining quencher concentration for a uniform sample. Methods of analysis for heterogeneous systems are based on the assumption that the excitation is produced by a momentary flash. This condition is an idealization because...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:

    authors: Golub AS,Popel AS,Zheng L,Pittman RN

    更新日期:1999-06-01 00:00:00

  • Ab initio quantum chemical investigation of the first steps of the photocycle of phototropin: a model study.

    abstract::Phototropin is a blue light-activated photoreceptor that plays a dominant role in the phototropism of plants. The protein contains two subunits that bind flavin mononucleotide (FMN), which are responsible for the initial steps of the light-induced reaction. It has been proposed that the photoexcited flavin molecule ad...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/0031-8655(2003)077<0101:aiqcio>2.0.co;2

    authors: Neiss C,Saalfrank P

    更新日期:2003-01-01 00:00:00

  • Analysis of compact fluorescent lights for use by patients with photosensitive conditions.

    abstract::Ultraviolet radiation (UVR) is hazardous to patients with photosensitive skin disorders, such as lupus erythematosus, xeroderma pigmentosum and skin cancer. As such, these patients are advised to minimize their exposure to UVR. Classically, this is accomplished through careful avoidance of sun exposure and artificial ...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.2009.00540.x

    authors: Klein RS,Werth VP,Dowdy JC,Sayre RM

    更新日期:2009-07-01 00:00:00

  • In vitro study of the photocytotoxicity of some hypericin analogs on different cell lines.

    abstract::In the present study, hypericin analogs with an increased hydrophilic character were synthesized. As chemical modifications alter the lipophilicity/hydrophilicity balance together with the photophysical/chemical background of the molecule the influence of these structural changes on the cellular uptake, retention and ...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/0031-8655(2001)074<0164:ivsotp>2.0.co;2

    authors: Delaey EM,Obermuëller R,Zupkó I,De Vos D,Falk H,de Witte PA

    更新日期:2001-08-01 00:00:00

  • Sun exposure over a lifetime in Australian adults from latitudinally diverse regions.

    abstract::Spatio-temporal patterns in sun exposure underlie variations in skin cancer incidence and vitamin D deficiency, indicate effectiveness of sun protection programs and provide insights into future health risks. From 558 adults across four regions of Australia (Brisbane (27°S), Newcastle (33°S), Geelong and the Western D...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/php.12044

    authors: Lucas RM,Valery P,van der Mei I,Dwyer T,Pender MP,Taylor B,Ponsonby AL,Ausimmune Investigator Group.

    更新日期:2013-05-01 00:00:00

  • Purification and initial characterization of a putative blue light-regulated phosphodiesterase from Escherichia coli.

    abstract::The Escherichia coli protein YcgF contains a photosensory flavin adenine dinucleotide (FAD)-binding BLUF domain covalently linked to an EAL domain, which is predicted to have cyclic-di-guanosine monophosphate (GMP) phosphodiesterase activity. We have cloned, overexpressed and purified this protein, which we refer to a...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/2004-06-16-RA-203

    authors: Rajagopal S,Key JM,Purcell EB,Boerema DJ,Moffat K

    更新日期:2004-11-01 00:00:00

  • The measurement and analysis of normal incidence solar UVB radiation and its application to the photoclimatherapy protocol for psoriasis at the Dead Sea, Israel.

    abstract::The broad-band normal incidence UVB beam radiation has been measured at Neve Zohar, Dead Sea basin, using a prototype tracking instrument composed of a Model 501A UV-Biometer mounted on an Eppley Solar Tracker Model St-1. The diffuse and beam fraction of the solar global UVB radiation have been determined using the co...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.2010.00842.x

    authors: Kudish AI,Harari M,Evseev EG

    更新日期:2011-01-01 00:00:00

  • Synthesis, structure and photophysical properties of ferrocenyl or mixed sandwich cobaltocenyl ester linked meso-tetratolylporphyrin dyads.

    abstract::We report here the design and synthesis of porphyrin-metallocene dyads consisting of a metallocene [either ferrocene or mixed sandwich η(5)-[C5H4(COOH)]Co(η(4)-C4Ph4) connected via an ester linkage at meso phenyl position of either free-base or zinc porphyrin. All these dyad systems were characterized by various spect...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/php.12372

    authors: Gokulnath S,Achary BS,Kumar CK,Trivedi R,Sridhar B,Giribabu L

    更新日期:2015-01-01 00:00:00

  • Diversity of Chlamydomonas channelrhodopsins.

    abstract::Channelrhodopsins act as photoreceptors for control of motility behavior in flagellates and are widely used as genetically targeted tools to optically manipulate the membrane potential of specific cell populations ("optogenetics"). The first two channelrhodopsins were obtained from the model organism Chlamydomonas rei...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.2011.01027.x

    authors: Hou SY,Govorunova EG,Ntefidou M,Lane CE,Spudich EN,Sineshchekov OA,Spudich JL

    更新日期:2012-01-01 00:00:00

  • Quantum mechanical/molecular mechanical studies on spectral tuning mechanisms of visual pigments and other photoactive proteins.

    abstract::The protein environments surrounding the retinal tune electronic absorption maximum from 350 to 630 nm. Hybrid quantum mechanical/molecular mechanical (QM/MM) methods can be used in calculating excitation energies of retinal in its native protein environments and in studying the molecular basis of spectral tuning. We ...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1751-1097.2008.00308.x

    authors: Altun A,Yokoyama S,Morokuma K

    更新日期:2008-07-01 00:00:00

  • UV induced (6-4) photoproducts are distributed differently than cyclobutane dimers in nucleosomes.

    abstract::We have compared the distributions of two stable UV photoproducts in nucleosome core DNA at the single-nucleotide level using a T4 polymerase-exonuclease mapping procedure. The distribution of pyrimidine-pyrimidone (6-4) dimers was uncovered by reversing the major UV photo-product, cis-syn cyclobutane pyrimidine dimer...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1111/j.1751-1097.1990.tb01732.x

    authors: Gale JM,Smerdon MJ

    更新日期:1990-04-01 00:00:00

  • A rhodopsin-like protein in the plasma membrane of Silvetia compressa eggs.

    abstract::Unidirectional blue light directs the rhizoid-thallus axis in the apolar zygote of the brown alga, Silvetia compressa. This effect is mediated by an increase in the intracellular concentration of guanosine 3', 5'-cyclic monophosphate. In this study we show the identification of a rhodopsin-like protein, by means of an...

    journal_title:Photochemistry and photobiology

    pub_type: 杂志文章

    doi:10.1562/0031-8655(2002)075<0076:arlpit>2.0.co;2

    authors: Gualtieri P,Robinson KR

    更新日期:2002-01-01 00:00:00