Structural characterization of the PCV2d virus-like particle at 3.3 Å resolution reveals differences to PCV2a and PCV2b capsids, a tetranucleotide, and an N-terminus near the icosahedral 3-fold axes.

Abstract:

:Porcine circovirus 2 (PCV2) has a major impact on the swine industry. Eight PCV2 genotypes (a-h) have been identified using capsid sequence analysis. PCV2d has been designated as the emerging genotype. The cryo-electron microscopy molecular envelope of PCV2d virus-like particles identifies differences between PCV2a, b and d genotypes that accompany the emergence of PCV2b from PCV2a, and PCV2d from PCV2b. These differences indicate that sequence analysis of genotypes is insufficient, and that it is important to determine the PCV2 capsid structure as the virus evolves. Structure-based sequence comparison demonstrate that each genotype possesses a unique combination of amino acids located on the surface of the capsid that undergo substitution. We also demonstrate that the capsid N-terminus moves in response to increasing amount of nucleic acid packaged into the capsid. Furthermore, we model a tetranucleotide between the 5- and 2-fold axes of symmetry that appears to be responsible for capsid stability.

journal_name

Virology

journal_title

Virology

authors

Khayat R,Wen K,Alimova A,Gavrilov B,Katz A,Galarza JM,Gottlieb P

doi

10.1016/j.virol.2019.09.001

subject

Has Abstract

pub_date

2019-11-01 00:00:00

pages

186-197

eissn

0042-6822

issn

1096-0341

pii

S0042-6822(19)30258-2

journal_volume

537

pub_type

杂志文章

相关文献

VIROLOGY文献大全
  • Abolition of hCAR-dependent cell tropism using fiber knobs of Atadenovirus serotypes.

    abstract::Most adenoviral vectors use in gene therapy protocols derive from species C. However, expression of the primary receptor (human Coxsackievirus and Adenovirus receptor, hCAR) for these AdV is variable on cancer cells. In vivo targeting of a therapeutic gene to specific cells has then become a major issue in gene therap...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2003.12.023

    authors: Renaut L,Colin M,Leite JP,Benko M,D'Halluin JC

    更新日期:2004-04-10 00:00:00

  • Deletion and duplication mutations in the C-terminal nonconserved region of Sindbis virus nsP3: effects on phosphorylation and on virus replication in vertebrate and invertebrate cells.

    abstract::Little is known concerning the function of the C-terminal nonconserved region of Sindbis virus nsP3. In this report, we created a number of in-frame deletions and duplications (from 12 to 159 residues) in this region and examined their effects on Sindbis virus replication. Sindbis RNA transcripts containing these muta...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1994.1338

    authors: Lastarza MW,Grakoui A,Rice CM

    更新日期:1994-07-01 00:00:00

  • Viral persistent infection affects both transcriptional and posttranscriptional regulation of neuron-specific molecule GAP43.

    abstract::Recently, we reported that in vitro and in vivo persistent infection of neurons by lymphocytic choriomeningitis virus (LCMV) downregulated GAP43 expression, a protein involved in neuronal plasticity associated with learning and memory. Here, we investigated the transcriptional and posttranscriptional events involved. ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1997.8458

    authors: Cao W,Oldstone MB,De La Torre JC

    更新日期:1997-04-14 00:00:00

  • In vitro characterization of late steps of RNA recombination in turnip crinkle virus.II. The role of the priming stem and flanking sequences.

    abstract::Turnip crinkle carmovirus (TCV) has a uniquely high recombination frequency and nonrandom cross-over site distribution among the recombining TCV-associated satellite RNAs. An in vitro system has been developed that includes a partially purified TCV replicase preparation (RdRp) and chimeric RNAs that resemble the putat...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1998.9342

    authors: Nagy PD,Simon AE

    更新日期:1998-09-30 00:00:00

  • High level expression of nonfused foreign genes with Autographa californica nuclear polyhedrosis virus expression vectors.

    abstract::High levels of nonfused chloramphenicol acetyltransferase, beta-galactosidase, and beta-glucuronidase expressed under the control of new vector constructs of the polyhedrin promoter in Spodoptera frugiperda cells infected with Autographa californica nuclear polyhedrosis virus were investigated by SDS-PAGE and RNA dot ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90348-6

    authors: Luckow VA,Summers MD

    更新日期:1989-05-01 00:00:00

  • Intrinsically disordered region of influenza A NP regulates viral genome packaging via interactions with viral RNA and host PI(4,5)P2.

    abstract::To be incorporated into progeny virions, the viral genome must be transported to the inner leaflet of the plasma membrane (PM) and accumulate there. Some viruses utilize lipid components to assemble at the PM. For example, simian virus 40 (SV40) targets the ganglioside GM1 and human immunodeficiency virus type 1 (HIV-...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2016.05.018

    authors: Kakisaka M,Yamada K,Yamaji-Hasegawa A,Kobayashi T,Aida Y

    更新日期:2016-09-01 00:00:00

  • Simian virus 40 Vp2/3 small structural proteins harbor their own nuclear transport signal.

    abstract::We have used a microinjection approach to identify a domain of the simian virus 40 (SV40) structural proteins Vp2 and Vp3(Vp2/3) responsible for their nuclear transport. By using both synthetic peptides, containing small regions of Vp2/3 conjugated to bovine serum albumin (BSA), and beta-galactosidase-Vp3 fusion prote...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(91)90472-n

    authors: Clever J,Kasamatsu H

    更新日期:1991-03-01 00:00:00

  • Comparative analysis of the enveloped virions of two granulosis viruses of the armyworm, Pseudaletia unipuncta.

    abstract::The enveloped virions of two strains of a granulosis virus, a synergistic Hawaiian (GVH) and a nonsynergistic Oregonian (GVO) strain which infect the armyworm, Pseudaletia unipuncta, were liberated from their capsules with 0.02 N NaOH and purified by filtration through membrane filters. The envelopes were solubilized ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(79)90439-2

    authors: Yamamoto T,Tanada Y

    更新日期:1979-04-15 00:00:00

  • Characterization of adeno-associated virus rep proteins in human cells by antibodies raised against rep expressed in Escherichia coli.

    abstract::The rep gene of the defective human parvovirus, adeno-associated virus, (AAV) mediates several trans-acting functions important to virus replication, transcription, and gene expression. At least four overlapping polypeptides are expressed from the rep gene. We have constructed a prokaryotic vector which expressed in E...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(87)90166-8

    authors: Trempe JP,Mendelson E,Carter BJ

    更新日期:1987-11-01 00:00:00

  • Crystalline cowpea mosaic virus.

    abstract::Crystals of Cowpea mosaic virus displaying a high degree of order have been grown in two different forms. Hexagonal crystals, space group P6(1)22 or P6(5)22 with a = 450 A and c = 1038 A containing six virus particles per cell, have been grown in sodium citrate buffer at pH 4.9. Each particle has four nearest neighbor...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(80)90513-9

    authors: White JM,Johnson JE

    更新日期:1980-02-01 00:00:00

  • Adoptive transfer of infectious bronchitis virus primed alphabeta T cells bearing CD8 antigen protects chicks from acute infection.

    abstract::Infectious bronchitis virus (IBV) infection and associated illness may be dramatically modified by passive transfer of immune T lymphocytes. Lymphocytes collected 10 days postinfection were transferred to naive chicks before challenge with virus. As determined by respiratory illness and viral load, transfer of syngene...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2000.0211

    authors: Seo SH,Pei J,Briles WE,Dzielawa J,Collisson EW

    更新日期:2000-03-30 00:00:00

  • La Crosse bunyavirus can mediate pH-dependent fusion from without.

    abstract::Lipid binding properties which are dependent on exposure to acid pH are an important mechanism for the cellular entry pathway for some enveloped viruses and for other macromolecules. Cell-to-cell fusion can be used to demonstrate this function. La Crosse virus, a member of the family Bunyaviridae, fused BHK-21 cells f...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(84)90107-7

    authors: Gonzalez-Scarano F,Pobjecky N,Nathanson N

    更新日期:1984-01-15 00:00:00

  • Characterization of Japanese encephalitis virus envelope protein expressed by recombinant baculoviruses.

    abstract::Recombinant baculoviruses containing the coding sequences of the viral structural proteins, i.e., the capsid (C) protein, the precursor to premembrane (preM) protein, and the envelope (E) protein, as well as a nonstructural protein, NS1, of Japanese encephalitis virus (JEV) were constructed. Infection of Spodoptera fr...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90580-1

    authors: Matsuura Y,Miyamoto M,Sato T,Morita C,Yasui K

    更新日期:1989-12-01 00:00:00

  • Dynamics of viremia in primary HIV-1 infection in Africans: insights from analyses of host and viral correlates.

    abstract::In HIV-1 infection, plasma viral load (VL) has dual implications for pathogenesis and public health. Based on well-known patterns of HIV-1 evolution and immune escape, we hypothesized that VL is an evolving quantitative trait that depends heavily on duration of infection (DOI), demographic features, human leukocyte an...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2013.11.024

    authors: Prentice HA,Price MA,Porter TR,Cormier E,Mugavero MJ,Kamali A,Karita E,Lakhi S,Sanders EJ,Anzala O,Amornkul PN,Allen S,Hunter E,Kaslow RA,Gilmour J,Tang J,IAVI Africa HIV Prevention Partnership.

    更新日期:2014-01-20 00:00:00

  • Rapid adaptation of avian H7N9 virus in pigs.

    abstract::How the H7N9 avian influenza virus gained the distinct ability to infect humans is unclear. Pigs are an important host in influenza virus ecology because they are susceptible to infection with both avian and human influenza viruses and are often involved in interspecies transmission. Here, we passaged one avian isolat...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2014.01.016

    authors: Xu L,Bao L,Deng W,Zhu H,Li F,Chen T,Lv Q,Yuan J,Xu Y,Li Y,Yao Y,Gu S,Yu P,Chen H,Qin C

    更新日期:2014-03-01 00:00:00

  • Membrane topology of the vaccinia virus A17L envelope protein.

    abstract::The formation of a lipoprotein membrane within specialized areas of the cytoplasm is the first visible step in poxvirus morphogenesis. The A17L viral protein, an essential nonglycosylated membrane component, was predicted to have four centrally located alpha-helical membrane-spanning domains. The gene was expressed as...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.9870

    authors: Betakova T,Wolffe EJ,Moss B

    更新日期:1999-09-01 00:00:00

  • A new method for reconstituting influenza polymerase and RNA in vitro: a study of the promoter elements for cRNA and vRNA synthesis in vitro and viral rescue in vivo.

    abstract::The influenza RNA polymerase is known to catalyse three distinct copying activities: (i) transcription of minus-sense virion RNA (vRNA) into mRNA, (ii) transcription of vRNA into full-length complementary RNA (cRNA), and (iii) transcription of cRNA to vRNA. Ever since the discovery of the conserved 13 and 12 long sequ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90079-5

    authors: Seong BL,Brownlee GG

    更新日期:1992-01-01 00:00:00

  • In vitro mutational and inhibitory analysis of the cis-acting translational elements within the 5' untranslated region of coxsackievirus B3: potential targets for antiviral action of antisense oligomers.

    abstract::The 5' untranslated region (5'UTR) of coxsackievirus B3 (CVB3) RNA forms a highly ordered secondary structure that has been implicated in controlling initiation of viral translation by internal ribosomal entry. To test this hypothesis, synthetic bicistronic RNAs, with all or part of the 5'UTR in the intercistronic spa...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.8366

    authors: Yang D,Wilson JE,Anderson DR,Bohunek L,Cordeiro C,Kandolf R,McManus BM

    更新日期:1997-02-03 00:00:00

  • Identification of genes involved in replication and movement of peanut clump virus.

    abstract::The genome of peanut clump pecluvirus (PCV) consists of two messenger RNA components which contain, respectively, three and five open reading frames (ORFs). Inoculation of transcripts from full-length cDNA clones derived from the PCV RNAs showed that RNA-1 is able to replicate in the absence of RNA-2 in protoplasts, b...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1998.9287

    authors: Herzog E,Hemmer O,Hauser S,Meyer G,Bouzoubaa S,Fritsch C

    更新日期:1998-09-01 00:00:00

  • Tomato spotted wilt Tospovirus genome reassortment and genome segment-specific adaptation.

    abstract::A system to associate specific genome segments with viral phenotypes and to study factors influencing genome reassortment was developed for tomato spotted wilt Tospovirus (TSWV). Reassortant isolates were generated by co-inoculating a TSWV isolate, TSWV-D, with TSWV-10 or TSWV-MD. The parental origin of each genome se...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1998.9131

    authors: Qiu WP,Geske SM,Hickey CM,Moyer JW

    更新日期:1998-04-25 00:00:00

  • Monoclonal antibodies recognizing normal and retrovirus-transformed chicken hematopoietic cells.

    abstract::The avian hematopoietic system has long been an invaluable model to study the mechanisms of cell growth and differentiation. We have developed six MAbs against either chicken embryonic hematopoietic precursor cells or retrovirus-transformed cells. MAbs Mo1, Mo2, and Mo3 recognized transformation-associated markers exp...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90581-9

    authors: Liu JL,Klein PA,Moscovici MG,Moscovici C

    更新日期:1992-08-01 00:00:00

  • HIV-1 clones resistant to a small molecule CCR5 inhibitor use the inhibitor-bound form of CCR5 for entry.

    abstract::Human immunodeficiency virus type 1 (HIV-1) infection can be inhibited by small molecules that target the CCR5 coreceptor. Here, we describe some properties of clonal viruses resistant to one such inhibitor, SCH-D, using both chimeric, infectious molecular clones and Env-pseudotypes. Studies using combinations of CCR5...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2006.11.004

    authors: Pugach P,Marozsan AJ,Ketas TJ,Landes EL,Moore JP,Kuhmann SE

    更新日期:2007-04-25 00:00:00

  • Activation of protein kinase R by hepatitis C virus RNA-dependent RNA polymerase.

    abstract::Hepatitis C virus (HCV) was shown to activate protein kinase R (PKR), which inhibits expression of interferon (IFN) and IFN-stimulated genes by controlling the translation of newly transcribed mRNAs. However, it is unknown exactly how HCV activates PKR. To address the molecular mechanism(s) of PKR activation mediated ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2019.01.024

    authors: Suzuki R,Matsuda M,Shimoike T,Watashi K,Aizaki H,Kato T,Suzuki T,Muramatsu M,Wakita T

    更新日期:2019-03-01 00:00:00

  • Innate and acquired immunity to herpes simplex virus type 1.

    abstract::Immunization with heat-inactivated herpes simplex virus type 1 (HSV-1) 2-5 days before ocular infection reduced the frequency of establishment of latent HSV-1 infection in the trigeminal ganglion (TG); this induction of resistance coincided with reduced expression of IFN-gamma mRNA in the TG. Immunization with unrelat...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1997.8738

    authors: Halford WP,Veress LA,Gebhardt BM,Carr DJ

    更新日期:1997-09-29 00:00:00

  • Translational studies with turnip yellow mosaic virus RNAs isolated from major and minor virus particles.

    abstract::The major and minor nucleoprotein components in turnip yellow mosaic virus (TYMV) preparations have been fractionated by four cycles of CsCl gradient equilibrium centrifugations. RNAs isolated from the various fractions were translated in a rabbit reticulocyte cell-free system. Three classes of RNAs were studied: geno...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(79)90170-3

    authors: Mellema JR,Benicourt C,Haenni AL,Noort A,Pleij CW,Bosch L

    更新日期:1979-07-15 00:00:00

  • High dose of plasmid IL-15 inhibits immune responses in an influenza non-human primates immunogenicity model.

    abstract::Interleukin (IL)-15, is a cytokine that is important for the maintenance of long-lasting, high-avidity T cell response to invading pathogens and has, therefore, been used in vaccine and therapeutic platforms as an adjuvant. In addition to pure protein delivery, plasmids encoding the IL-15 gene have been utilized. Howe...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.07.017

    authors: Yin J,Dai A,Laddy DJ,Yan J,Arango T,Khan AS,Lewis MG,Andersen H,Kutzler MA,Draghia-Akli R,Weiner DB,Boyer JD

    更新日期:2009-10-10 00:00:00

  • Transcriptional block of HTLV-I LTR by sequence-specific methylation.

    abstract::HTLV-I infection is characterized by low viremia and restricted viral expression. While the mechanisms regulating viral latency are poorly understood, it is believed that interactions between viral and host cellular factor(s) are involved. Several lines of evidence indicate that HTLV-I provirus may be methylated in pr...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(91)90649-v

    authors: Saggioro D,Forino M,Chieco-Bianchi L

    更新日期:1991-05-01 00:00:00

  • The C-X-C chemokine IP-10 stimulates HIV-1 replication.

    abstract::Chemokines play critical roles in HIV-1 infection, serving both to modulate viral replication and to recruit target cells to sites of infection. Interferon-gamma-inducible protein 10 (IP-10/CXCL10) is a C-X-C chemokine that acts specifically upon activated T cells and macrophages and attracts T cells into the cerebros...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/s0042-6822(02)00045-4

    authors: Lane BR,King SR,Bock PJ,Strieter RM,Coffey MJ,Markovitz DM

    更新日期:2003-03-01 00:00:00

  • An analysis of the requirements for human cytomegalovirus oriLyt-dependent DNA synthesis in the presence of the herpes simplex virus type 1 replication fork proteins.

    abstract::Activation of the human cytomegalovirus (HCMV) origin of replication (oriLyt) was previously demonstrated in transient transfection assays in permissive human fetal fibroblasts and nonpermissive Vero cells, and shown to require six viral proteins that function at the replication fork plus a number of HCMV products tha...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/s0042-6822(03)00005-9

    authors: Reid GG,Ellsmore V,Stow ND

    更新日期:2003-04-10 00:00:00

  • TLR5 stimulation is sufficient to trigger reactivation of latent HIV-1 provirus in T lymphoid cells and activate virus gene expression in central memory CD4+ T cells.

    abstract::When effector CD4+ T cells carrying integrated HIV-1 proviruses revert back to a resting memory state, the virus can remain silent in those cells for years. Following re-exposure to the nominal antigen or in response to other stimuli (e.g. pro-inflammatory cytokines), these cells can begin to produce virus. Here we de...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.04.019

    authors: Thibault S,Imbeault M,Tardif MR,Tremblay MJ

    更新日期:2009-06-20 00:00:00