Parallel PRC2/cPRC1 and vPRC1 pathways silence lineage-specific genes and maintain self-renewal in mouse embryonic stem cells.

Abstract:

:The transcriptional repressors Polycomb repressive complex 1 (PRC1) and PRC2 are required to maintain cell fate during embryonic development. PRC1 and PRC2 catalyze distinct histone modifications, establishing repressive chromatin at shared targets. How PRC1, which consists of canonical PRC1 (cPRC1) and variant PRC1 (vPRC1) complexes, and PRC2 cooperate to silence genes and support mouse embryonic stem cell (mESC) self-renewal is unclear. Using combinatorial genetic perturbations, we show that independent pathways of cPRC1 and vPRC1 are responsible for maintenance of H2A monoubiquitylation and silencing of shared target genes. Individual loss of PRC2-dependent cPRC1 or PRC2-independent vPRC1 disrupts only one pathway and does not impair mESC self-renewal capacity. However, loss of both pathways leads to mESC differentiation and activation of a subset of lineage-specific genes co-occupied by relatively high levels of PRC1/PRC2. Thus, parallel pathways explain the differential requirements for PRC1 and PRC2 and provide robust silencing of lineage-specific genes.

journal_name

Sci Adv

journal_title

Science advances

authors

Zepeda-Martinez JA,Pribitzer C,Wang J,Bsteh D,Golumbeanu S,Zhao Q,Burkard TR,Reichholf B,Rhie SK,Jude J,Moussa HF,Zuber J,Bell O

doi

10.1126/sciadv.aax5692

subject

Has Abstract

pub_date

2020-04-01 00:00:00

pages

eaax5692

issue

14

issn

2375-2548

pii

aax5692

journal_volume

6

pub_type

杂志文章
  • Stabilizers as a design tool for new forms of the Lechner-Hauke-Zoller annealer.

    abstract::In a recent paper, Lechner, Hauke, and Zoller (LHZ) described a means to translate a Hamiltonian of N spin-1/2 particles with "all-to-all" interactions into a larger physical lattice with only on-site energies and local parity constraints. LHZ used this mapping to propose a novel form of quantum annealing. We provide ...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.1601246

    authors: Rocchetto A,Benjamin SC,Li Y

    更新日期:2016-10-21 00:00:00

  • Probing biophysical sequence constraints within the transmembrane domains of rhodopsin by deep mutational scanning.

    abstract::Membrane proteins must balance the sequence constraints associated with folding and function against the hydrophobicity required for solvation within the bilayer. We recently found the expression and maturation of rhodopsin are limited by the hydrophobicity of its seventh transmembrane domain (TM7), which contains pol...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aay7505

    authors: Penn WD,McKee AG,Kuntz CP,Woods H,Nash V,Gruenhagen TC,Roushar FJ,Chandak M,Hemmerich C,Rusch DB,Meiler J,Schlebach JP

    更新日期:2020-03-04 00:00:00

  • Mid-Pleistocene transition in glacial cycles explained by declining CO2 and regolith removal.

    abstract::Variations in Earth's orbit pace the glacial-interglacial cycles of the Quaternary, but the mechanisms that transform regional and seasonal variations in solar insolation into glacial-interglacial cycles are still elusive. Here, we present transient simulations of coevolution of climate, ice sheets, and carbon cycle o...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aav7337

    authors: Willeit M,Ganopolski A,Calov R,Brovkin V

    更新日期:2019-04-03 00:00:00

  • Direct 4D printing via active composite materials.

    abstract::We describe an approach to print composite polymers in high-resolution three-dimensional (3D) architectures that can be rapidly transformed to a new permanent configuration directly by heating. The permanent shape of a component results from the programmed time evolution of the printed shape upon heating via the desig...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.1602890

    authors: Ding Z,Yuan C,Peng X,Wang T,Qi HJ,Dunn ML

    更新日期:2017-04-12 00:00:00

  • Novel technology for storage and distribution of live vaccines and other biological medicines at ambient temperature.

    abstract::A novel, thin-film platform that preserves live viruses, bacteria, antibodies, and enzymes without refrigeration for extended periods of time is described. Studies with recombinant adenovirus in an optimized formulation that supports recovery of live virus through 16 freeze-thaw cycles revealed that production of an a...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aau4819

    authors: Bajrovic I,Schafer SC,Romanovicz DK,Croyle MA

    更新日期:2020-03-04 00:00:00

  • Dose-dependent functions of SWI/SNF BAF in permitting and inhibiting cell proliferation in vivo.

    abstract::SWI/SNF (switch/sucrose nonfermenting) complexes regulate transcription through chromatin remodeling and opposing gene silencing by Polycomb group (PcG) proteins. Genes encoding SWI/SNF components are critical for normal development and frequently mutated in human cancer. We characterized the in vivo contributions of ...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aay3823

    authors: van der Vaart A,Godfrey M,Portegijs V,van den Heuvel S

    更新日期:2020-05-20 00:00:00

  • Unconventional route to dual-shelled organolead halide perovskite nanocrystals with controlled dimensions, surface chemistry, and stabilities.

    abstract::The past few years have witnessed rapid advances in the synthesis of high-quality perovskite nanocrystals (PNCs). However, despite the impressive developments, the stability of PNCs remains a substantial challenge. The ability to reliably improve stability of PNCs while retaining their individual nanometer size repres...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aax4424

    authors: He Y,Yoon YJ,Harn YW,Biesold-McGee GV,Liang S,Lin CH,Tsukruk VV,Thadhani N,Kang Z,Lin Z

    更新日期:2019-11-29 00:00:00

  • Direct imaging of ultrafast lattice dynamics.

    abstract::Under rapid high-temperature, high-pressure loading, lattices exhibit complex elastic-inelastic responses. The dynamics of these responses are challenging to measure experimentally because of high sample density and extremely small relevant spatial and temporal scales. Here, we use an x-ray free-electron laser providi...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aau8044

    authors: Brown SB,Gleason AE,Galtier E,Higginbotham A,Arnold B,Fry A,Granados E,Hashim A,Schroer CG,Schropp A,Seiboth F,Tavella F,Xing Z,Mao W,Lee HJ,Nagler B

    更新日期:2019-03-08 00:00:00

  • Dense hydroxyl polyethylene glycol dendrimer targets activated glia in multiple CNS disorders.

    abstract::Poor transport of neuropharmaceutics through central nervous system (CNS) barriers limits the development of effective treatments for CNS disorders. We present the facile synthesis of a novel neuroinflammation-targeting polyethylene glycol-based dendrimer (PEGOL-60) using an efficient click chemistry approach. PEGOL-6...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aay8514

    authors: Sharma A,Sharma R,Zhang Z,Liaw K,Kambhampati SP,Porterfield JE,Lin KC,DeRidder LB,Kannan S,Kannan RM

    更新日期:2020-01-22 00:00:00

  • Isoprene photo-oxidation products quantify the effect of pollution on hydroxyl radicals over Amazonia.

    abstract::Nitrogen oxides (NO x ) emitted from human activities are believed to regulate the atmospheric oxidation capacity of the troposphere. However, observational evidence is limited for the low-to-median NO x concentrations prevalen...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aar2547

    authors: Liu Y,Seco R,Kim S,Guenther AB,Goldstein AH,Keutsch FN,Springston SR,Watson TB,Artaxo P,Souza RAF,McKinney KA,Martin ST

    更新日期:2018-04-11 00:00:00

  • Tunable structure and dynamics of active liquid crystals.

    abstract::Active materials are capable of converting free energy into directional motion, giving rise to notable dynamical phenomena. Developing a general understanding of their structure in relation to the underlying nonequilibrium physics would provide a route toward control of their dynamic behavior and pave the way for pote...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aat7779

    authors: Kumar N,Zhang R,de Pablo JJ,Gardel ML

    更新日期:2018-10-12 00:00:00

  • Revealing physical interaction networks from statistics of collective dynamics.

    abstract::Revealing physical interactions in complex systems from observed collective dynamics constitutes a fundamental inverse problem in science. Current reconstruction methods require access to a system's model or dynamical data at a level of detail often not available. We exploit changes in invariant measures, in particula...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.1600396

    authors: Nitzan M,Casadiego J,Timme M

    更新日期:2017-02-10 00:00:00

  • A highly potent lymphatic system-targeting nanoparticle cyclosporine prevents glomerulonephritis in mouse model of lupus.

    abstract::Cyclosporine A (CsA) is a powerful immunosuppressant, but it is an ineffective stand-alone treatment for systemic lupus erythematosus (SLE) due to poor target tissue distribution and renal toxicity. We hypothesized that CD71 (transferrin receptor 1)-directed delivery of CsA to the lymphatic system would improve SLE ou...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.abb3900

    authors: Ganugula R,Arora M,Zou D,Agarwal SK,Mohan C,Kumar MNVR

    更新日期:2020-06-12 00:00:00

  • Ultrafast time-resolved x-ray scattering reveals diffusive charge order dynamics in La2-x Ba x CuO4.

    abstract::Charge order is universal among high-Tc cuprates, but its relation to superconductivity is unclear. While static order competes with superconductivity, dynamic order may be favorable and even contribute to Cooper pairing. Using time-resolved resonant soft x-ray scattering at a free-electron laser, we show that the cha...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aax3346

    authors: Mitrano M,Lee S,Husain AA,Delacretaz L,Zhu M,de la Peña Munoz G,Sun SX,Joe YI,Reid AH,Wandel SF,Coslovich G,Schlotter W,van Driel T,Schneeloch J,Gu GD,Hartnoll S,Goldenfeld N,Abbamonte P

    更新日期:2019-08-16 00:00:00

  • Observation of inverse Edelstein effect in Rashba-split 2DEG between SrTiO3 and LaAlO3 at room temperature.

    abstract::The Rashba physics has been intensively studied in the field of spin orbitronics for the purpose of searching novel physical properties and the ferromagnetic (FM) magnetization switching for technological applications. We report our observation of the inverse Edelstein effect up to room temperature in the Rashba-split...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.1602312

    authors: Song Q,Zhang H,Su T,Yuan W,Chen Y,Xing W,Shi J,Sun J,Han W

    更新日期:2017-03-17 00:00:00

  • High-speed imaging of ice nucleation in water proves the existence of active sites.

    abstract::Understanding how surfaces direct nucleation is a complex problem that limits our ability to predict and control crystal formation. We here address this challenge using high-speed imaging to identify and quantify the sites at which ice nucleates in water droplets on the two natural cleavage faces of macroscopic feldsp...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aav4316

    authors: Holden MA,Whale TF,Tarn MD,O'Sullivan D,Walshaw RD,Murray BJ,Meldrum FC,Christenson HK

    更新日期:2019-02-01 00:00:00

  • RNA binding activates RIG-I by releasing an autorepressed signaling domain.

    abstract::The retinoic acid-inducible gene I (RIG-I) innate immune receptor is an important immunotherapeutic target, but we lack approaches for monitoring the physical basis for its activation in vitro. This gap in our understanding has led to confusion about mechanisms of RIG-I activation and difficulty discovering agonists a...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aax3641

    authors: Dickey TH,Song B,Pyle AM

    更新日期:2019-10-02 00:00:00

  • Super-resolution nanoscopy by coherent control on nanoparticle emission.

    abstract::Super-resolution nanoscopy based on wide-field microscopic imaging provided high efficiency but limited resolution. Here, we demonstrate a general strategy to push its resolution down to ~50 nm, which is close to the range of single molecular localization microscopy, without sacrificing the wide-field imaging advantag...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aaw6579

    authors: Liu C,Liu W,Wang S,Li H,Lv Z,Zhang F,Zhang D,Teng J,Zheng T,Li D,Zhang M,Xu P,Gong Q

    更新日期:2020-04-17 00:00:00

  • Exceptions to bed-controlled ice sheet flow and retreat from glaciated continental margins worldwide.

    abstract::Projections of ice sheet behavior hinge on how ice flow velocity evolves and the extent to which marine-based grounding lines are stable. Ice flow and grounding line retreat are variably governed by the coupling between the ice and underlying terrain. We ask to what degree catchment-scale bed characteristics determine...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.abb6291

    authors: Greenwood SL,Simkins LM,Winsborrow MCM,Bjarnadóttir LR

    更新日期:2021-01-13 00:00:00

  • Accelerated evolution of a minimal 63-amino acid dual transcription factor.

    abstract::Transcription factors control gene expression in all life. This raises the question of what is the smallest protein that can support such activity. In nature, Cro from bacteriophage λ is one of the smallest known repressors (66 amino acids), and activators are typically much larger (e.g., λ cI, 237 amino acids). Previ...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aba2728

    authors: Brödel AK,Rodrigues R,Jaramillo A,Isalan M

    更新日期:2020-06-10 00:00:00

  • Mountain glaciation drives rapid oxidation of rock-bound organic carbon.

    abstract::Over millions of years, the oxidation of organic carbon contained within sedimentary rocks is one of the main sources of carbon dioxide to the atmosphere, yet the controls on this emission remain poorly constrained. We use rhenium to track the oxidation of rock-bound organic carbon in the mountain watersheds of New Ze...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.1701107

    authors: Horan K,Hilton RG,Selby D,Ottley CJ,Gröcke DR,Hicks M,Burton KW

    更新日期:2017-10-04 00:00:00

  • Do slow slip events trigger large and great megathrust earthquakes?

    abstract::Slow slip events have been suggested to trigger subduction earthquakes. However, examples to date have been poorly recorded, occurring offshore, where data are sparse. Better understanding of slow slip events and their influence on subsequent earthquakes is critical for hazard forecasts. We analyze a well-recorded eve...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aat8472

    authors: Voss N,Dixon TH,Liu Z,Malservisi R,Protti M,Schwartz S

    更新日期:2018-10-31 00:00:00

  • Increased fluxes of shelf-derived materials to the central Arctic Ocean.

    abstract::Rising temperatures in the Arctic Ocean region are responsible for changes such as reduced ice cover, permafrost thawing, and increased river discharge, which, together, alter nutrient and carbon cycles over the vast Arctic continental shelf. We show that the concentration of radium-228, sourced to seawater through se...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aao1302

    authors: Kipp LE,Charette MA,Moore WS,Henderson PB,Rigor IG

    更新日期:2018-01-03 00:00:00

  • Multiple lipid binding sites determine the affinity of PH domains for phosphoinositide-containing membranes.

    abstract::Association of peripheral proteins with lipid bilayers regulates membrane signaling and dynamics. Pleckstrin homology (PH) domains bind to phosphatidylinositol phosphate (PIP) molecules in membranes. The effects of local PIP enrichment on the interaction of PH domains with membranes is unclear. Molecular dynamics simu...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aay5736

    authors: Yamamoto E,Domański J,Naughton FB,Best RB,Kalli AC,Stansfeld PJ,Sansom MSP

    更新日期:2020-02-19 00:00:00

  • Confinement-induced self-organization in growing bacterial colonies.

    abstract::We investigate the emergence of global alignment in colonies of dividing rod-shaped cells under confinement. Using molecular dynamics simulations and continuous modeling, we demonstrate that geometrical anisotropies in the confining environment give rise to an imbalance in the normal stresses, which, in turn, drives a...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.abc8685

    authors: You Z,Pearce DJG,Giomi L

    更新日期:2021-01-22 00:00:00

  • Linking mobile money networks to "e-ROSCAs": An experimental study.

    abstract::We present results from a study in the Democratic Republic of the Congo that uses mobile money networks to run rotating savings and credit associations (ROSCAs), peer-to-peer finance groups ubiquitous across the developing world. We find high rates of contribution and ROSCA success. The unexpected success of such e-RO...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.abc5831

    authors: Francois P,Squires M

    更新日期:2021-01-01 00:00:00

  • Ultrafast correlated charge and lattice motion in a hybrid metal halide perovskite.

    abstract::Hybrid organic-inorganic halide perovskites have shown remarkable optoelectronic properties, exhibiting an impressive tolerance to defects believed to originate from correlated motion of charge carriers and the polar lattice forming large polarons. Few experimental techniques are capable of directly probing these corr...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aaw5558

    authors: Lan Y,Dringoli BJ,Valverde-Chávez DA,Ponseca CS Jr,Sutton M,He Y,Kanatzidis MG,Cooke DG

    更新日期:2019-05-31 00:00:00

  • Incorporating intrinsic suppression in deep neural networks captures dynamics of adaptation in neurophysiology and perception.

    abstract::Adaptation is a fundamental property of sensory systems that can change subjective experiences in the context of recent information. Adaptation has been postulated to arise from recurrent circuit mechanisms or as a consequence of neuronally intrinsic suppression. However, it is unclear whether intrinsic suppression by...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.abd4205

    authors: Vinken K,Boix X,Kreiman G

    更新日期:2020-10-14 00:00:00

  • A comprehensive portrait of the venom of the giant red bull ant, Myrmecia gulosa, reveals a hyperdiverse hymenopteran toxin gene family.

    abstract::Ants (Hymenoptera: Formicidae) are diverse and ubiquitous, and their ability to sting is familiar to many of us. However, their venoms remain largely unstudied. We provide the first comprehensive characterization of a polypeptidic ant venom, that of the giant red bull ant, Myrmecia gulosa. We reveal a suite of novel p...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aau4640

    authors: Robinson SD,Mueller A,Clayton D,Starobova H,Hamilton BR,Payne RJ,Vetter I,King GF,Undheim EAB

    更新日期:2018-09-12 00:00:00

  • Charge localization and reentrant superconductivity in a quasi-ballistic InAs nanowire coupled to superconductors.

    abstract::A semiconductor nanowire with strong spin-orbit coupling in proximity to a superconductor is predicted to display Majorana edge states emerging under a properly oriented magnetic field. The experimental investigation of these exotic states requires assessing the one-dimensional (1D) character of the nanowire and under...

    journal_title:Science advances

    pub_type: 杂志文章

    doi:10.1126/sciadv.aav1235

    authors: Estrada Saldaña JC,Žitko R,Cleuziou JP,Lee EJH,Zannier V,Ercolani D,Sorba L,Aguado R,De Franceschi S

    更新日期:2019-07-05 00:00:00