A systematic investigation of the stability of green fluorescent protein fusion proteins.

Abstract:

:X-ray crystallography provides important insights into structure-function relationship in biomolecules. However, protein crystals are usually hard to obtain which hinders our understanding of multiple important processes. Crystallization requires large amount of protein sample, whereas recombinant proteins are often unstable or insoluble. Green fluorescent protein (GFP) fusion is one of the approaches to increase protein synthesis, solubility and stability, facilitating crystallization. In this study we analyze the influence of the linker length, composition and the position of GFP relative to the fusion partner on the fusion protein production and stability. To this end, multiple constructs of enzymatically impaired variant of PemKSa toxin from Staphylococcus aureus CH91 fused to GFP were generated. Fusion protein production in Escherichia coli was evaluated. The proteins were purified and their stability tested. PemKSa-α14aa-GFP fusion provided best production and stability. Obtained results demonstrate the importance of optimization of fusion protein construct, including linker selection and the order of fusion partners, in obtaining high quantities of stable protein for crystallization.

journal_name

Acta Biochim Pol

journal_title

Acta biochimica Polonica

authors

Janczak M,Bukowski M,Górecki A,Dubin G,Dubin A,Wladyka B

doi

10.18388/abp.2015_1026

subject

Has Abstract

pub_date

2015-01-01 00:00:00

pages

407-11

issue

3

eissn

0001-527X

issn

1734-154X

pii

2015_1026

journal_volume

62

pub_type

杂志文章
  • Hemagglutination inhibition antibody titers as a correlate of protection against influenza disease in the 2018/2019 epidemic season in Poland.

    abstract::The aim of this study was to determine the level of antibodies against hemagglutinin of influenza viruses in the sera of people in the seven age groups in the epidemic season 2018/2019 in Poland. The level of anti-hemagglutinin antibodies was determined by hemagglutination inhibition test (HAI). 1050 clinical samples ...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:10.18388/abp.2020_5088

    authors: Hallmann-Szelińska E,Szymański K,Łuniewska K,Kondratiuk K,Brydak LB

    更新日期:2020-03-17 00:00:00

  • Infectious transcripts from cloned cDNA of potato leafroll luteovirus.

    abstract::Infectious transcripts play a key role in the research on plant viruses at the molecular level. A number of cDNA clones covering the whole genome of the Polish isolate of potato leafroll virus were constructed. Four overlapping clones were selected and assembled using restriction sites. The full copy was positioned be...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Sadowy E,Pluta K,Gronenborn B,Hulanicka D

    更新日期:1998-01-01 00:00:00

  • Eriochrome black T as a dye for agarose gel electrophoresis.

    abstract::We found that it is possible to use eriochrome black T as a dye for agarose gel electrophoresis of DNA. The presence of the dye does not change the migration rate of DNA and does not influence the electrophoretical picture. ...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Obuchowski M,Wegrzyn G

    更新日期:1991-01-01 00:00:00

  • Structure of the arginase coding gene and its transcript in Aspergillus nidulans.

    abstract::The arginase structural gene (agaA) from Aspergillus nidulans has been cloned and characterised. Depending on the growth conditions of the mycelium, transcripts of this gene have different 5'ends. These differences could result either from the presence of multiple transcription initiation sites or from differential pr...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Borsuk P,Dzikowska A,Empel J,Grzelak A,Grześkowiak R,Weglenski P

    更新日期:1999-01-01 00:00:00

  • Nuclear extrachromosomal DNA of higher plants.

    abstract::Recent reports indicate that minichromosomes and other small genetic entities may occur in the nuclei of uninfected higher plants. They become especially abundant under some special growth conditions and, sometimes, resemble extrachromosomal genes of ciliated protozoa. An example of such gene-sized DNA species was iso...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章,评审

    doi:

    authors: Buchowicz J

    更新日期:1997-01-01 00:00:00

  • The nomenclature of 1-aminoalkylphosphonic acids and derivatives: evolution of the code system.

    abstract::The approach for the unification of published proposals for the nomenclature and abbreviations of aminoalkylphosphonic acids and their derivatives is presented. Their modification was made on the basis of the IUPAC-IUB rules concerning the nomenclature and code system of proteinogenic amino acids. Our present proposal...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:10.18388/abp.2014_904

    authors: Drabowicz J,Jakubowski H,Kudzin MH,Kudzin ZH

    更新日期:2015-01-01 00:00:00

  • Influence of process parameters on properties of Nanostructured Lipid Carriers (NLC) formulation.

    abstract::Nanostructured lipid carriers (NLC) are stable colloidal formulations with notable advantages for drug delivery systems. Thanks to their physicochemical stability, biocompatibility, biodegradability and controlled drug release, they have received increasing attention for the last several years. The aim of the study wa...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Lasoń E,Sikora E,Ogonowski J

    更新日期:2013-01-01 00:00:00

  • Inhibition of cell proliferation and induction of apoptosis in K562 human leukemia cells by the derivative (3-NpC) from dihydro-pyranochromenes family.

    abstract::Leukemia is a particular type of cancer characterized by the failure of cell death or disability in differentiation of hematopoietic cells. Chronic myelogenus leukemia (CML) is the most studied kind of this cancer. In this study, anti-cancer effect of dihydro-pyranochromenes derivatives were investigated in the human ...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:10.18388/abp.2014_825

    authors: Rahimi R,Mahdavi M,Pejman S,Zare P,Balalaei S

    更新日期:2015-01-01 00:00:00

  • Diversity of influenza-like illness etiology in Polish Armed Forces in influenza epidemic season.

    abstract::The aim of this study was to conduct an epidemiological and laboratory surveillance of Influenza-Like Illnesses (ILI) in Polish Armed Forces, civilian military personnel and their families in 2011/2012 epidemic season, under the United States Department of Defense-Global Emerging Infections Surveillance and Response S...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Kocik J,Niemcewicz M,Winnicka I,Michalski A,Bielawska-Drózd A,Kołodziej M,Joniec J,Cieślik P,Graniak G,Mirski T,Gaweł J,Bielecka-Oder A,Kubiak L,Russell K

    更新日期:2014-01-01 00:00:00

  • Comparison and evaluation of three different molecular methods for detection of human Betapapillomaviruses in skin biopsies from patients with nonmelanoma skin cancer and precancerous lesions.

    abstract::Betapapillomaviruses have been linked to the development of nonmelanoma skin cancers. A great diversity of these viruses in skin specimens requires the use of sensitive and reliable detection methods. There are currently no standardized assays for diagnostic purposes. A combination of several molecular methods has gre...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:10.18388/abp.2020_5185

    authors: Kopeć J,Szostek S,Sułowicz J,Zawilińska B

    更新日期:2020-06-08 00:00:00

  • N-acetylmuramyl-L-alanine amidase of Vi phage III.

    abstract::1. A lytic enzyme was isolated from Vi phage III-induced lysate of Salmonella typhi, and purified about 200-fold by chromatography on IRC-50, CM-cellulose, and Sephadex G-75 columns. 2. Both E. coli B murein and muropeptide C6 were digested on incubation with the lytic enzyme. The main product of murein and muropeptid...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Jastrzemski KB

    更新日期:1975-01-01 00:00:00

  • Beta-carotene enhances the recovery of lymphocytes from oxidative DNA damage.

    abstract::Epidemiological studies have revealed a strong correlation between high intake of fruit and vegetables and low incidence of certain cancers. Micronutrients present in these foods are thought to decrease free radical attack on DNA and hence protect against mutations that cause cancer, but the fine details of the causal...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Fillion L,Collins A,Southon S

    更新日期:1998-01-01 00:00:00

  • Light conditions alter accumulation of long chain polyprenols in leaves of trees and shrubs throughout the vegetation season.

    abstract::In many plants belonging to angiosperms and gymnosperms the accumulation in leaves of long chain polyprenols and polyprenyl esters during growth in natural habitats depends on the light intensity. The amount of polyprenols in leaves is also positively correlated with the thickness of the leaf blade (SLA, specific leaf...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:055201233

    authors: Bajda A,Chojnacki T,Hertel J,Swiezewska E,Wójcik J,Kaczkowska A,Marczewski A,Bojarczuk T,Karolewski P,Oleksyn J

    更新日期:2005-01-01 00:00:00

  • High-resolution structure of NodZ fucosyltransferase involved in the biosynthesis of the nodulation factor.

    abstract::The fucosyltransferase NodZ is involved in the biosynthesis of the nodulation factor in nitrogen-fixing symbiotic bacteria. It catalyzes alpha1,6 transfer of l-fucose from GDP-fucose to the reducing residue of the synthesized Nod oligosaccharide. We present the structure of the NodZ protein from Bradyrhizobium express...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Brzezinski K,Stepkowski T,Panjikar S,Bujacz G,Jaskolski M

    更新日期:2007-01-01 00:00:00

  • Myosin molecule packing within the vertebrate skeletal muscle thick filaments. A complete bipolar model.

    abstract::Computer modelling related to the real dimensions of both the whole filament and the myosin molecule subfragments has revealed two alternative modes for myosin molecule packing which lead to the head disposition similar to that observed by EM on the surface of the cross-bridge zone of the relaxed vertebrate skeletal m...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:024904829

    authors: Skubiszak L,Kowalczyk L

    更新日期:2002-01-01 00:00:00

  • Relation of the polymorphism of cyp51A sequence and the susceptibility of Aspergillus fumigatus isolates to triazoles determined by commercial gradient test (Etest) and by reference methods.

    abstract::The aim of this study was to evaluate the accuracy of commercial gradient test (Etest) in the detection of triazole resistant Aspergillus fumigatus isolates using reference microdilution methods and the analysis of sequences of the cyp 51A gene. The study was performed on twenty clinical isolates which were identified...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:10.18388/abp.2017_1571

    authors: Nawrot U,Sulik-Tyszka B,Kurzyk E,Mroczyńska M,Włodarczyk K,Wróblewska M,Basak GW,Brillowska-Dąbrowska A

    更新日期:2017-01-01 00:00:00

  • Kidney injury by cyclosporine A is aggravated in heme oxygenase-1 deficient mice and involves regulation of microRNAs.

    abstract::Cyclosporine A (CsA), a widely used immunosuppressive drug, exerts nephrotoxic activities, as demonstrated by increased tubulointerstitial fibrosis, inflammation and podocyte damage. Recently, a number of microRNAs expressed in the kidney have been reported to be elevated during renal damage. Our aim was to investigat...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:10.18388/abp.2018_2658

    authors: Łoboda A,Mucha O,Podkalicka P,Sobczak M,Miksza-Cybulska A,Kaczara P,Jozkowicz A,Dulak J

    更新日期:2018-11-27 00:00:00

  • Filarial glutathione S-transferase: its induction by xenobiotics and potential as drug target.

    abstract::Glutathione-S-transferase (GST) a Phase-II drug detoxification enzyme, was detected in Setaria cervi, a bovine filarial parasite. In vitro effect of diethylcarbamazine, butylated hydroxyanisole and phenobarbitone on the GST of adult female S. cervi was assayed by the addition of these compounds in the maintenance medi...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Gupta S,Rathaur S

    更新日期:2005-01-01 00:00:00

  • Studies on the nature of genotoxic and cytotoxic effects induced by hydralazine.

    abstract::The nature of genotoxic and cytotoxic effects induced by hydralazine was analyzed taking into account possible protection of cells by catalase, superoxide dismutase and dimethyl sulfoxide. For the experiments designed to evaluate the influence of scavengers on the genotoxicity expressed as the SOS induction factor the...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Marczewska J,Koziorowska JH

    更新日期:1997-01-01 00:00:00

  • Effect of maternal dietary supplementation with phytosterol esters on muscle development of broiler offspring.

    abstract::Recently, embryo muscle development, which is crucial for postnatal skeletal muscle growth, has been investigated widely. Nutrients in ovo were suggested to be critical in embryo muscle development since the chick growth mostly relies on nutrients in eggs at the early developmental stage. Phytosterol esters (PE), whic...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:10.18388/abp.2020_2884

    authors: Wang L,Zuo X,Zhao W,Zhou G,Luo L,Yang K,Shu G,Wang S,Gao P,Zhu X,Jiang Q,Wang L

    更新日期:2020-03-19 00:00:00

  • Halogen bonds involved in binding of halogenated ligands by protein kinases.

    abstract::Analysis of 664 known structures of protein kinase complexes with halogenated ligands revealed 424 short contacts between a halogen atom and a potential protein X-bond acceptor, the topology and geometry of which were analyzed according to the type of a halogen atom (X = Cl, Br, I) and a putative protein X-bond accept...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章,评审

    doi:10.18388/abp.2015_1106

    authors: Poznański J,Winiewska M,Czapinska H,Poznańska A,Shugar D

    更新日期:2016-01-01 00:00:00

  • The influence of chromone based hydrazones on lipid peroxidation and bFGF concentration in the HL-60 cell line.

    abstract::Natural and synthetic derivatives of benzo-γ-pyrones (i.e. flavones, chromones, and coumarins) and their synthetic analogues possess a wide range of biological properties in vitro and in vivo. In this paper we investigated the influence of two hydrazone compounds of chromones, 3-{[(2-dimethoxytiophosphoryl)-2-methylhy...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Łazarenkow A,Michalska M,Gorąca A,Mirowski M,Nawrot-Modranka J,Piechota-Polanczyk A

    更新日期:2013-01-01 00:00:00

  • Haplotype analysis of phenylalanine hydroxylase alleles in polish families with phenylketonuria.

    abstract::Eight polymorphic restriction enzyme sites at phenylalanine hydroxylase locus from the parental chromosomes in Polish families with phenylketonuria were analyzed. Among 28 chromosomes studied, we identified haplotypes found within the Danish population. Haplotype 2 has been found in 25% of affected alleles. One of the...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Jaruzelska J,Borski K,Riess O,Blin N,Słomski R

    更新日期:1989-01-01 00:00:00

  • Multidirectional effects of triterpene saponins on cancer cells - mini-review of in vitro studies.

    abstract::Triterpene saponins (saponosides) are found in a variety of higher plants and display a wide range of pharmacological activities, including expectorant, anti-inflamatory, vasoprotective, gastroprotective and antimicrobial properties. Recently, a potential anticancer activity of saponins has been suggested by their cyt...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章,评审

    doi:10.18388/abp.2015_1089

    authors: Koczurkiewicz P,Czyż J,Podolak I,Wójcik K,Galanty A,Janeczko Z,Michalik M

    更新日期:2015-01-01 00:00:00

  • The access of metabolites into yeast mitochondria in the presence and absence of the voltage dependent anion selective channel (YVDAC1).

    abstract::Since yeast Saccharomyces cerevisiae mutants depleted of the voltage dependent anion selective channel (YVDAC1) are still able to grow on a non-fermentable carbon source, a functional transport system in the outer mitochondrial membrane must exist to support the access of metabolites into mitochondria. It was assumed ...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Kmita H,Stobienia O,Michejda J

    更新日期:1999-01-01 00:00:00

  • Growth of mixed cancer cell population - in silico the size matters.

    abstract::Cancer heterogeneity is still underexplored and difficult to investigate. The whole network of factors engaged in tumor growth makes clinical cases, as well as the in vivo and in vitro experiments, of limited use in terms of understanding cancer heterogeneity. Our idea was to start from scratch and focus on the simple...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:10.18388/abp.2020_5500

    authors: Kłóś A,Płonka PM

    更新日期:2020-11-26 00:00:00

  • Melatonin as an antioxidant: biochemical mechanisms and pathophysiological implications in humans.

    abstract::This brief resume enumerates the multiple actions of melatonin as an antioxidant. This indoleamine is produced in the vertebrate pineal gland, the retina and possibly some other organs. Additionally, however, it is found in invertebrates, bacteria, unicellular organisms as well as in plants, all of which do not have a...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章,评审

    doi:0350041129

    authors: Reiter RJ,Tan DX,Mayo JC,Sainz RM,Leon J,Czarnocki Z

    更新日期:2003-01-01 00:00:00

  • Glucosamine-6-phosphate synthase, a novel target for antifungal agents. Molecular modelling studies in drug design.

    abstract::Fungal infections are a growing problem in contemporary medicine, yet only a few antifungal agents are used in clinical practice. In our laboratory we proposed the enzyme L-glutamine: D-fructose-6-phosphate amidotransferase (EC 2.6.1.16) as a new target for antifungals. The structure of this enzyme consists of two dom...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章,评审

    doi:

    authors: Wojciechowski M,Milewski S,Mazerski J,Borowski E

    更新日期:2005-01-01 00:00:00

  • Cytostatic and cytotoxic effects of (E)-2'-deoxy-2'-(fluoromethylene)-cytidine on a solid tumor and a leukemia cell line.

    abstract::(E)-2'-deoxy-2'-(fluoromethylene)-cytidine (FMdC), a deoxycytidine analog displaying a very high toxicity toward a variety of solid tumor cell lines and xenografts, is activated intracellularly by deoxycytidine kinase (dCK). We have compared cytotoxicity of FMdC towards a human promyeolocytic leukemia line HL-60 and a...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Grie P,Koronkiewicz M,Skierski JS

    更新日期:2000-01-01 00:00:00

  • Influence of 2,5-dichloro-1,4-benzoquinone on jack bean urease activity. Inhibitory effect, total reducing capacity and DPPH radical scavenging activity.

    abstract::Inhibition of jack bean activity by 2,5-dichloro-1,4-benzoquinone (DCBQ) was studied in phosphate buffer, pH 7.0. It was found that DCBQ acted as a strong, time and concentration dependent inactivator of urease. Under the experimental conditions obeyed the terms of pseudo-first-order reaction, urease was totally inact...

    journal_title:Acta biochimica Polonica

    pub_type: 杂志文章

    doi:

    authors: Kot M,Olech Z

    更新日期:2011-01-01 00:00:00