Alpine Snow Algae Microbiome Diversity in the Coast Range of British Columbia.

Abstract:

:Snow algae blooms contain bacteria, fungi, and other microscopic organisms. We surveyed 55 alpine snow algae blooms, collecting a total of 68 samples, from 12 mountains in the Coast Range of British Columbia, Canada. We used microscopy and rDNA metabarcoding to document biodiversity and query species and taxonomic associations. Across all samples, we found 173 algal, 2,739 bacterial, 380 fungal, and 540 protist/animalia operational taxonomic units (OTUs). In a previous study, we reported that most algal species were distributed along an elevational gradient. In the current study, we were surprised to find no corresponding distribution in any other taxa. We also tested the hypothesis that certain bacterial and fungal taxa co-occur with specific algal taxa. However, despite previous evidence that particular genera co-occur, we found no significant correlations between taxa across our 68 samples. Notably, seven bacterial, one fungal, and two cercozoan OTUs were widely distributed across our study regions. Taken together, these data suggest that any mutualisms with algae may not be taxon specific. We also report evidence of snow algae predation by rotifers, tardigrades, springtails, chytrid fungi, and ciliates, establishing the framework for a complex food web.

journal_name

Front Microbiol

authors

Yakimovich KM,Engstrom CB,Quarmby LM

doi

10.3389/fmicb.2020.01721

subject

Has Abstract

pub_date

2020-07-28 00:00:00

pages

1721

issn

1664-302X

journal_volume

11

pub_type

杂志文章
  • Rapid, Quantitative, High-Sensitive Detection of Escherichia coli O157:H7 by Gold-Shell Silica-Core Nanospheres-Based Surface-Enhanced Raman Scattering Lateral Flow Immunoassay.

    abstract::Escherichia coli O157:H7 is regarded as one of the most harmful pathogenic microorganisms related to foodborne diseases. This paper proposes a rapid-detection biosensor for the sensitive and quantitative analysis of E. coli O157:H7 in biological samples by surface-enhanced Raman scattering (SERS)-based lateral flow im...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.596005

    authors: Shi L,Xu L,Xiao R,Zhou Z,Wang C,Wang S,Gu B

    更新日期:2020-11-06 00:00:00

  • Efficient Biofilm-Based Fermentation Strategies for L-Threonine Production by Escherichia coli.

    abstract::Biofilms provide cells favorable growth conditions, which have been exploited in industrial biotechnological processes. However, industrial application of the biofilm has not yet been reported in Escherichia coli, one of the most important platform strains, though the biofilm has been extensively studied for pathogeni...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.01773

    authors: Chen T,Liu N,Ren P,Xi X,Yang L,Sun W,Yu B,Ying H,Ouyang P,Liu D,Chen Y

    更新日期:2019-08-02 00:00:00

  • Environmental bacteriophages: viruses of microbes in aquatic ecosystems.

    abstract::Since the discovery 2-3 decades ago that viruses of microbes are abundant in marine ecosystems, viral ecology has grown increasingly to reach the status of a full scientific discipline in environmental sciences. A dedicated ISVM society, the International Society for Viruses of Microorganisms, (http://www.isvm.org/) w...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2014.00355

    authors: Sime-Ngando T

    更新日期:2014-07-24 00:00:00

  • The Naphthalene Catabolic Genes of Pseudomonas putida BS3701: Additional Regulatory Control.

    abstract::Pseudomonas microorganisms are used for bioremediation of soils contaminated with petroleum hydrocarbons. The overall remediation efficiency is largely dependent on the presence of macro- and micronutrients. Widely varying concentrations of available nitrogen and iron (Fe) in soils were shown to affect residual hydroc...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.01217

    authors: Pozdnyakova-Filatova I,Petrikov K,Vetrova A,Frolova A,Streletskii R,Zakharova M

    更新日期:2020-06-05 00:00:00

  • To the Land and Beyond: Crab Microbiomes as a Paradigm for the Evolution of Terrestrialization.

    abstract::The transition to terrestrial environments by formerly aquatic species has occurred repeatedly in many animal phyla and lead to the vast diversity of extant terrestrial species. The differences between aquatic and terrestrial habitats are enormous and involved remarkable morphological and physiological changes. Conver...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2020.575372

    authors: Cannicci S,Fratini S,Meriggi N,Bacci G,Iannucci A,Mengoni A,Cavalieri D

    更新日期:2020-10-07 00:00:00

  • The Fungus Aspergillus aculeatus Enhances Salt-Stress Tolerance, Metabolite Accumulation, and Improves Forage Quality in Perennial Ryegrass.

    abstract::Perennial ryegrass (Lolium perenne) is an important forage grass with high yield and superior quality in temperate regions which is widely used in parks, sport field, and other places. However, perennial ryegrass is moderately tolerant to salinity stress compared to other commercial cultivars and salt stress reduces t...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2017.01664

    authors: Li X,Han S,Wang G,Liu X,Amombo E,Xie Y,Fu J

    更新日期:2017-09-04 00:00:00

  • You Can't B. cereus - A Review of Bacillus cereus Strains That Cause Anthrax-Like Disease.

    abstract::Emerging strains of Bacillus cereus, traditionally considered a self-limiting foodborne pathogen, have been associated with anthrax-like disease in mammals, including humans. The strains have emerged by divergent evolution and, as exchange of genetic material in the Bacillus genus occurs naturally, it is possible that...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2020.01731

    authors: Baldwin VM

    更新日期:2020-08-19 00:00:00

  • Staphylococcus aureus Bacteriophage Suppresses LPS-Induced Inflammation in MAC-T Bovine Mammary Epithelial Cells.

    abstract::Several previous studies have shown that bacteriophages can significantly affect the production of various cytokines. The aim of this present study was to investigate the inflammatory effects and mechanisms of bacteriophage vB_SauM_JS25 in stimulated MAC-T bovine mammary epithelial cells by real-time polymerase chain ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.01614

    authors: Zhang L,Hou X,Sun L,He T,Wei R,Pang M,Wang R

    更新日期:2018-07-23 00:00:00

  • Yeast Probiotics Shape the Gut Microbiome and Improve the Health of Early-Weaned Piglets.

    abstract::Weaning is one of the most stressful challenges in the pig's life, which contributes to dysfunctions of intestinal and immune system, disrupts the gut microbial ecosystem, and therefore compromises the growth performance and health of piglets. To mitigate the negative impact of the stress on early-weaned piglets, effe...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.02011

    authors: Xu J,Li Y,Yang Z,Li C,Liang H,Wu Z,Pu W

    更新日期:2018-08-23 00:00:00

  • Simultaneous Discovery of Positive and Negative Interactions Among Rhizosphere Bacteria Using Microwell Recovery Arrays.

    abstract::Understanding microbe-microbe interactions is critical to predict microbiome function and to construct communities for desired outcomes. Investigation of these interactions poses a significant challenge due to the lack of suitable experimental tools available. Here we present the microwell recovery array (MRA), a new ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.601788

    authors: Barua N,Herken AM,Stern KR,Reese S,Powers RL,Morrell-Falvey JL,Platt TG,Hansen RR

    更新日期:2021-01-05 00:00:00

  • A Genetic and Chemical Perspective on Symbiotic Recruitment of Cyanobacteria of the Genus Nostoc into the Host Plant Blasia pusilla L.

    abstract::Liverwort Blasia pusilla L. recruits soil nitrogen-fixing cyanobacteria of genus Nostoc as symbiotic partners. In this work we compared Nostoc community composition inside the plants and in the soil around them from two distant locations in Northern Norway. STRR fingerprinting and 16S rDNA phylogeny reconstruction sho...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.01693

    authors: Liaimer A,Jensen JB,Dittmann E

    更新日期:2016-11-01 00:00:00

  • Two-Stage Interpretation of Changes in TEER of Intestinal Epithelial Layers Protected by Adhering Bifidobacteria During E. coli Challenges.

    abstract::Mechanisms of gastrointestinal protection by probiotic bacteria against infection involve amongst others, modulation of intestinal epithelial barrier function. Trans-epithelial electrical resistance (TEER) is widely used to evaluate cellular barrier functions. Here, we developed a two-stage interpretative model of the...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.599555

    authors: Yuan L,van der Mei HC,Busscher HJ,Peterson BW

    更新日期:2020-11-19 00:00:00

  • Effects of Polymorphisms in the SjSP-13 Gene of Schistosoma japonicum on Its Diagnostic Efficacy and Immunogenicity.

    abstract::Schistosomiasis japonica is one of the most prevalent parasitic diseases in China. The scarcity of effective diagnostic tools is a major factor that contributes to the high prevalence of schistosomiasis japonica. SjSP-13 is a promising serological diagnostic biomarker of the disease. However, it is unclear whether pol...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.01695

    authors: Xu X,Cui X,Zhu L,Li Z,Zhang Y,Ma L,Pan W

    更新日期:2018-07-25 00:00:00

  • Genetic variability and evolutionary dynamics of viruses of the family Closteroviridae.

    abstract::RNA viruses have a great potential for genetic variation, rapid evolution and adaptation. Characterization of the genetic variation of viral populations provides relevant information on the processes involved in virus evolution and epidemiology and it is crucial for designing reliable diagnostic tools and developing e...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2013.00151

    authors: Rubio L,Guerri J,Moreno P

    更新日期:2013-06-26 00:00:00

  • Wasted Bread as Substrate for the Cultivation of Starters for the Food Industry.

    abstract::The amount of bread wasted daily worldwide, throughout its entire lifecycle, from production to distribution, is estimated to be hundreds of tons, therefore representing both economic and environmental issues. This work aimed at the valorization of wasted bread, setting-up a protocol for obtaining a growth medium to b...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.00293

    authors: Verni M,Minisci A,Convertino S,Nionelli L,Rizzello CG

    更新日期:2020-02-28 00:00:00

  • Validating an Automated Nucleic Acid Extraction Device for Omics in Space Using Whole Cell Microbial Reference Standards.

    abstract::NASA has made great strides in the past five years to develop a suite of instruments for the International Space Station in order to perform molecular biology in space. However, a key piece of equipment that has been lacking is an instrument that can extract nucleic acids from an array of complex human and environment...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.01909

    authors: Urbaniak C,Wong S,Tighe S,Arumugam A,Liu B,Parker CW,Wood JM,Singh NK,Skorupa DJ,Peyton BM,Jenson R,Karouia F,Dragon J,Venkateswaran K

    更新日期:2020-08-21 00:00:00

  • Diversity, Abundance, and Niche Differentiation of Ammonia-Oxidizing Prokaryotes in Mud Deposits of the Eastern China Marginal Seas.

    abstract::The eastern China marginal seas (ECMS) are prominent examples of river-dominated ocean margins, whose most characteristic feature is the existence of isolated mud patches on sandy sediments. Ammonia-oxidizing prokaryotes play a crucial role in the nitrogen cycles of many marine environments, including marginal seas. H...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.00137

    authors: Yu S,Yao P,Liu J,Zhao B,Zhang G,Zhao M,Yu Z,Zhang XH

    更新日期:2016-02-12 00:00:00

  • Antibiotics in Canadian poultry productions and anticipated alternatives.

    abstract::The use of antibiotics in food-producing animals has significantly increased animal health by lowering mortality and the incidence of diseases. Antibiotics also have largely contributed to increase productivity of farms. However, antibiotic usage in general and relevance of non-therapeutic antibiotics (growth promoter...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2014.00282

    authors: Diarra MS,Malouin F

    更新日期:2014-06-17 00:00:00

  • Combatting cyanobacteria with hydrogen peroxide: a laboratory study on the consequences for phytoplankton community and diversity.

    abstract::Experiments with different phytoplankton densities in lake samples showed that a high biomass increases the rate of hydrogen peroxide (HP) degradation and decreases the effectiveness of HP in the selective suppression of dominant cyanobacteria. However, selective application of HP requires usage of low doses only, acc...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2015.00714

    authors: Weenink EF,Luimstra VM,Schuurmans JM,Van Herk MJ,Visser PM,Matthijs HC

    更新日期:2015-07-22 00:00:00

  • Antibiofilm and Antihyphal Activities of Cedar Leaf Essential Oil, Camphor, and Fenchone Derivatives against Candida albicans.

    abstract::Candida albicans can form biofilms composed of yeast, hyphal, and pseudohyphal elements, and C. albicans cells in the hyphal stage could be a virulence factor. The present study describes the chemical composition, antibiofilm, and antihyphal activities of cedar leaf essential oil (CLEO), which was found to possess rem...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2017.01476

    authors: Manoharan RK,Lee JH,Lee J

    更新日期:2017-08-03 00:00:00

  • Tracking Cefoperazone/Sulbactam Resistance Development In vivo in A. baumannii Isolated from a Patient with Hospital-Acquired Pneumonia by Whole-Genome Sequencing.

    abstract::Cefoperazone/sulbactam has been shown to be efficacious for the treatment of infections caused by Acinetobacter baumannii; however, the mechanism underlying resistance to this synergistic combination is not well understood. In the present study, two A. baumannii isolates, AB1845 and AB2092, were isolated from a patien...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.01268

    authors: Liu X,Zheng H,Zhang W,Shen Z,Zhao M,Chen Y,Sun L,Shi J,Zhang J

    更新日期:2016-08-19 00:00:00

  • Endogenous CRISPR-Cas System-Based Genome Editing and Antimicrobials: Review and Prospects.

    abstract::CRISPR-Cas systems adapt "memories" via spacers from viruses and plasmids to develop adaptive immunity against mobile genetic elements. Mature CRISPR RNAs guide CRISPR-associated nucleases to site-specifically cleave target DNA or RNA, providing an efficient genome engineering tool for organisms of all three kingdoms....

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2019.02471

    authors: Li Y,Peng N

    更新日期:2019-10-25 00:00:00

  • Succession of Composition and Function of Soil Bacterial Communities During Key Rice Growth Stages.

    abstract::Elucidating the succession of soil microbial communities and microbial functions at key plant growth stages is a major goal of microbial ecology research. In this study, we investigated the succession of soil bacteria during four fertilizer treatments (control, NPK, NPK + pig manure, and NPK + straw) and at three cruc...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.00421

    authors: Wang W,Luo X,Chen Y,Ye X,Wang H,Cao Z,Ran W,Cui Z

    更新日期:2019-03-11 00:00:00

  • Designing and Engineering Methylorubrum extorquens AM1 for Itaconic Acid Production.

    abstract::Methylorubrum extorquens (formerly Methylobacterium extorquens) AM1 is a methylotrophic bacterium with a versatile lifestyle. Various carbon sources including acetate, succinate and methanol are utilized by M. extorquens AM1 with the latter being a promising inexpensive substrate for use in the biotechnology industry....

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.01027

    authors: Lim CK,Villada JC,Chalifour A,Duran MF,Lu H,Lee PKH

    更新日期:2019-05-09 00:00:00

  • High Heating Rates Affect Greatly the Inactivation Rate of Escherichia coli.

    abstract::Heat resistance of microorganisms can be affected by different influencing factors. Although, the effect of heating rates has been scarcely explored by the scientific community, recent researches have unraveled its important effect on the thermal resistance of different species of vegetative bacteria. Typically heatin...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.01256

    authors: Huertas JP,Aznar A,Esnoz A,Fernández PS,Iguaz A,Periago PM,Palop A

    更新日期:2016-08-11 00:00:00

  • Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection.

    abstract::Soft rot caused by numerous species of Pectobacterium and Dickeya is a serious threat to the world production of potatoes. The application of bacteriophages to combat bacterial infections in medicine, agriculture, and the food industry requires the selection of comprehensively studied lytic phages and the knowledge of...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.03147

    authors: Lukianova AA,Shneider MM,Evseev PV,Shpirt AM,Bugaeva EN,Kabanova AP,Obraztsova EA,Miroshnikov KK,Senchenkova SN,Shashkov AS,Toschakov SV,Knirel YA,Ignatov AN,Miroshnikov KA

    更新日期:2020-01-23 00:00:00

  • Peptidoglycan Muropeptides: Release, Perception, and Functions as Signaling Molecules.

    abstract::Peptidoglycan (PG) is an essential molecule for the survival of bacteria, and thus, its biosynthesis and remodeling have always been in the spotlight when it comes to the development of antibiotics. The peptidoglycan polymer provides a protective function in bacteria, but at the same time is continuously subjected to ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2019.00500

    authors: Irazoki O,Hernandez SB,Cava F

    更新日期:2019-03-28 00:00:00

  • First Line of Defense: Innate Cell-Mediated Control of Pulmonary Aspergillosis.

    abstract::Mycotic infections and their effect on the human condition have been widely overlooked and poorly surveilled by many health organizations even though mortality rates have increased in recent years. The increased usage of immunosuppressive and myeloablative therapies for the treatment of malignant as well as non-malign...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2016.00272

    authors: Espinosa V,Rivera A

    更新日期:2016-03-03 00:00:00

  • A Cross-Protective Vaccine Against 4b and 1/2b Listeria monocytogenes.

    abstract::Listeria monocytogenes (Lm) is a foodborne zoonotic pathogen that causes listeriosis with a mortality rate of 20-30%. Serovar 4b and 1/2b isolates account for most of listeriosis outbreaks, however, no listeriosis vaccine is available for either prophylactic or therapeutic use. Here, we developed a triple-virulence-ge...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.569544

    authors: Meng F,Zhu T,Yao H,Ling Z,Feng Y,Li G,Li J,Sun X,Chen J,Meng C,Jiao X,Yin Y

    更新日期:2020-12-11 00:00:00

  • Structure-Function Relationship of Inclusion Bodies of a Multimeric Protein.

    abstract::High level expression of recombinant proteins in bacteria often results in their aggregation into inclusion bodies. Formation of inclusion bodies poses a major bottleneck in high-throughput recovery of recombinant protein. These aggregates have amyloid-like nature and can retain biological activity. Here, effect of ex...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.00876

    authors: Singh A,Upadhyay V,Singh A,Panda AK

    更新日期:2020-05-08 00:00:00