Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance.

Abstract:

:Diversifying selection on metabolic pathways can reduce intraspecific gene flow and promote population divergence. An opportunity to explore this arises from mitonuclear discordance observed in an Australian bird Eopsaltria australis. Across >1500 km, nuclear differentiation is low and latitudinally structured by isolation by distance, whereas two highly divergent, parapatric mitochondrial lineages (>6.6% in ND2) show a discordant longitudinal geographic pattern and experience different climates. Vicariance, incomplete lineage sorting and sex-biased dispersal were shown earlier to be unlikely drivers of the mitonuclear discordance; instead, natural selection on a female-linked trait was the preferred hypothesis. Accordingly, here we tested for signals of positive, divergent selection on mitochondrial genes in E. australis. We used codon models and physicochemical profiles of amino acid replacements to analyse complete mitochondrial genomes of the two mitochondrial lineages in E. australis, its sister species Eopsaltria griseogularis, and outgroups. We found evidence of positive selection on at least five amino acids, encoded by genes of two oxidative phosphorylation pathway complexes NADH dehydrogenase (ND4 and ND4L) and cytochrome bc1 (cyt-b) against a background of widespread purifying selection on all mitochondrial genes. Three of these amino acid replacements were fixed in ND4 of the geographically most widespread E. australis lineage. The other two replacements were fixed in ND4L and cyt-b of the geographically more restricted E. australis lineage. We discuss whether this selection may reflect local environmental adaptation, a by-product of other selective processes, or genetic incompatibilities, and propose how these hypotheses can be tested in future.

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Morales HE,Pavlova A,Joseph L,Sunnucks P

doi

10.1111/mec.13203

subject

Has Abstract

pub_date

2015-06-01 00:00:00

pages

2820-37

issue

11

eissn

0962-1083

issn

1365-294X

journal_volume

24

pub_type

杂志文章
  • No evidence for accumulation of deleterious mutations and fitness degradation in clonal fish hybrids: Abandoning sex without regrets.

    abstract::Despite its inherent costs, sexual reproduction is ubiquitous in nature, and the mechanisms to protect it from a competitive displacement by asexuality remain unclear. Popular mutation-based explanations, like the Muller's ratchet and the Kondrashov's hatchet, assume that purifying selection may not halt the accumulat...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15539

    authors: Kočí J,Röslein J,Pačes J,Kotusz J,Halačka K,Koščo J,Fedorčák J,Iakovenko N,Janko K

    更新日期:2020-08-01 00:00:00

  • Fine-scale diversity and specificity in the most prevalent lineage of symbiotic dinoflagellates (Symbiodinium, Dinophyceae) of the Caribbean.

    abstract::The success of coral reefs is due to obligate mutualistic symbioses involving invertebrates and photosynthetic dinoflagellate symbionts belonging to the genus Symbiodinium. In the Caribbean, the vast majority of octocorals and other invertebrate hosts associate with Symbiodinium clade B, and more selectively, with a s...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.02058.x

    authors: Santos SR,Shearer TL,Hannes AR,Coffroth MA

    更新日期:2004-02-01 00:00:00

  • Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes?

    abstract::Christmas Island is located at the overlap of the Indian and Pacific Ocean marine provinces and is a hot spot for marine hybridization. Here, we evaluate the ecological framework and genetic consequences of hybridization between butterflyfishes Chaetodon guttatissimus and Chaetodon punctatofasciatus. Further, we compa...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12762

    authors: Montanari SR,Hobbs JP,Pratchett MS,Bay LK,Van Herwerden L

    更新日期:2014-06-01 00:00:00

  • Molecular interactions between an insect predator and its herbivore prey on transgenic potato expressing a cysteine proteinase inhibitor from rice.

    abstract::Transgenic plants expressing resistance to herbivorous insects may represent a safe and sustainable pest control alternative if they do not interfere with the natural enemies of target pests. Here we examined interactions between oryzacystatin I (OCI), a proteinase inhibitor from rice genetically engineered into potat...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01918.x

    authors: Bouchard E,Michaud D,Cloutier C

    更新日期:2003-09-01 00:00:00

  • Disjunct distribution of highly diverged mitochondrial lineage clade and population subdivision in a marine bivalve with pelagic larval dispersal.

    abstract::Mitochondrial DNA sequence data for 295 individuals of the marine bivalve Macoma balthica (L.) were collected from 10 sites across the European distribution, and from Alaska. The data were used to infer population subdivision history and estimate current levels of gene flow. Inferred historical biogeography was expect...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01872.x

    authors: Luttikhuizen PC,Drent J,Baker AJ

    更新日期:2003-08-01 00:00:00

  • Bacterial diversity in a glacier foreland of the high Arctic.

    abstract::Over the past 100 years, Arctic temperatures have increased at almost twice the global average rate. One consequence is the acceleration of glacier retreat, exposing new habitats that are colonized by microorganisms whose diversity and function are unknown. Here, we characterized bacterial diversity along two approxim...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04479.x

    authors: Schütte UM,Abdo Z,Foster J,Ravel J,Bunge J,Solheim B,Forney LJ

    更新日期:2010-03-01 00:00:00

  • Timing strains of the marine insect Clunio marinus diverged and persist with gene flow.

    abstract::Genetic divergence of populations in the presence of gene flow is a central theme in speciation research. Theory predicts that divergence can happen with full range overlap - in sympatry - driven by ecological factors, but there are few empirical examples of how ecologically divergent selection can overcome gene flow ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15791

    authors: Kaiser TS,von Haeseler A,Tessmar-Raible K,Heckel DG

    更新日期:2021-01-07 00:00:00

  • Plant dispersal in the sub-Antarctic inferred from anisotropic genetic structure.

    abstract::Climatic conditions and landscape features often strongly affect species' local distribution patterns, dispersal, reproduction and survival and may therefore have considerable impacts on species' fine-scale spatial genetic structure (SGS). In this study, we demonstrate the efficacy of combining fine-scale SGS analyses...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05372.x

    authors: Born C,Le Roux PC,Spohr C,McGeoch MA,Van Vuuren BJ

    更新日期:2012-01-01 00:00:00

  • Population genetic structuring of the king weakfish, Macrodon ancylodon (Sciaenidae), in Atlantic coastal waters of South America: deep genetic divergence without morphological change.

    abstract::Phylogeographic patterns in Macrodon ancylodon sampled from 12 locations across all its range were investigated using mitochondrial DNA cytochrome b sequences, and analysed together with patterns of morphometric differentiation. Populations of the North Brazil and the Brazil currents, with warmer waters, form a clade ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.03108.x

    authors: Santos S,Hrbek T,Farias IP,Schneider H,Sampaio I

    更新日期:2006-12-01 00:00:00

  • Genomic evidence for gene flow between monarchs with divergent migratory phenotypes and flight performance.

    abstract::Monarch butterflies are known for their spectacular annual migration in eastern North America, with millions of monarchs flying up to 4,500 km to overwintering sites in central Mexico. Monarchs also live west of the Rocky Mountains, where they travel shorter distances to overwinter along the Pacific Coast. It is often...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15508

    authors: Talla V,Pierce AA,Adams KL,de Man TJB,Nallu S,Villablanca FX,Kronforst MR,de Roode JC

    更新日期:2020-07-01 00:00:00

  • How the truffle got its mate: insights from genetic structure in spontaneous and planted Mediterranean populations of Tuber melanosporum.

    abstract::The life cycles and dispersal of edible fungi are still poorly known, thus limiting our understanding of their evolution and domestication. The prized Tuber melanosporum produces fruitbodies (fleshy organs where meiospores mature) gathered in natural, spontaneously inoculated forests or harvested in plantations of nur...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13864

    authors: Taschen E,Rousset F,Sauve M,Benoit L,Dubois MP,Richard F,Selosse MA

    更新日期:2016-11-01 00:00:00

  • Copy number variants outperform SNPs to reveal genotype-temperature association in a marine species.

    abstract::Copy number variants (CNVs) are a major component of genotypic and phenotypic variation in genomes. To date, our knowledge of genotypic variation and evolution has largely been acquired by means of single nucleotide polymorphism (SNPs) analyses. Until recently, the adaptive role of structural variants (SVs) and partic...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15565

    authors: Dorant Y,Cayuela H,Wellband K,Laporte M,Rougemont Q,Mérot C,Normandeau E,Rochette R,Bernatchez L

    更新日期:2020-12-01 00:00:00

  • The Baltic Sea as a model system for studying postglacial colonization and ecological differentiation, exemplified by the red alga Ceramium tenuicorne.

    abstract::The Baltic Sea provides a unique model system for studying genetic effects of postglacial colonization and ecological differentiation, because all marine organisms must have immigrated after the opening of the Danish Straits 8000 years ago and responded to the development of the steep Skagerrak-Baltic salinity gradien...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01601.x

    authors: Gabrielsen TM,Brochmann C,Rueness J

    更新日期:2002-10-01 00:00:00

  • Evolution of putative barrier loci at an intermediate stage of speciation with gene flow in campions (Silene).

    abstract::Understanding the origin of new species is a central goal in evolutionary biology. Diverging lineages often evolve highly heterogeneous patterns of genetic differentiation; however, the underlying mechanisms are not well understood. We investigated evolutionary processes governing genetic differentiation between the h...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15571

    authors: Liu X,Glémin S,Karrenberg S

    更新日期:2020-09-01 00:00:00

  • Evolutionary trade-offs of insecticide resistance - The fitness costs associated with target-site mutations in the nAChR of Drosophila melanogaster.

    abstract::The evolution of resistance to drugs and pesticides poses a major threat to human health and food security. Neonicotinoids are highly effective insecticides used to control agricultural pests. They target the insect nicotinic acetylcholine receptor and mutations of the receptor that confer resistance have been slow to...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15503

    authors: Homem RA,Buttery B,Richardson E,Tan Y,Field LM,Williamson MS,Emyr Davies TG

    更新日期:2020-07-01 00:00:00

  • Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota).

    abstract::Population studies have revealed that the fungal ectomycorrhizal morphospecies Tricholoma scalpturatum consists of at least two genetically distinct groups that occur sympatrically in several geographical areas. This discovery prompted us to examine species boundaries and relationships between members formerly assigne...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04863.x

    authors: Jargeat P,Martos F,Carriconde F,Gryta H,Moreau PA,Gardes M

    更新日期:2010-12-01 00:00:00

  • Biodiversity of rhizobia isolated from a wide range of forest legumes in Brazil.

    abstract::Tropical forests have a high diversity of plant species; are they associated with a correspondingly rich microbial flora? We addressed this question by examining the symbiotic rhizobium bacteria that nodulate a diverse pool of forest legume species in Brazil. The 44 strains studied had been isolated from 29 legume tre...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1998.00411.x

    authors: Moreira FM,Haukka K,Young JP

    更新日期:1998-07-01 00:00:00

  • Contrasting patterns of mitochondrial and microsatellite population structure in fragmented populations of greater prairie-chickens.

    abstract::Greater prairie-chickens (Tympanuchus cupido pinnatus) were once found throughout the tallgrass prairie of midwestern North America but over the last century these prairies have been lost or fragmented by human land use. As a consequence, many current populations of prairie-chickens have become isolated and small. Thi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.02013.x

    authors: Johnson JA,Toepfer JE,Dunn PO

    更新日期:2003-12-01 00:00:00

  • Social structure of the mound-building mouse Mus spicilegus revealed by genetic analysis with microsatellites.

    abstract::The Mound-building mouse Mus spicilegus possesses a unique behaviour amongst mice. It constructs large earthen mounds and associated nesting chambers which serve to store food for immature individuals during the winter nesting period. We have used genetic analysis of four autosomal and four X-linked microsatellite loc...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1997.00278.x

    authors: Garza JC,Dallas J,Duryadi D,Gerasimov S,Croset H,Boursot P

    更新日期:1997-11-01 00:00:00

  • Plastid DNA variation in the Dactylorhiza incarnata/maculata polyploid complex and the origin of allotetraploid D. sphagnicola (Orchidaceae).

    abstract::To obtain further information on the polyploid dynamics of the the Dactylorhiza incarnata/maculata polyploid complex and the origin of the allotetraploid D. sphagnicola (Orchidaceae), plastid DNA variation was studied in 400 plants from from Sweden and elsewhere in Europe and Asia Minor by means of polymerase chain re...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2003.01930.x

    authors: Hedrén M

    更新日期:2003-10-01 00:00:00

  • Integrative analyses unveil speciation linked to host plant shift in Spialia butterflies.

    abstract::Discovering cryptic species in well-studied areas and taxonomic groups can have profound implications in understanding eco-evolutionary processes and in nature conservation because such groups often involve research models and act as flagship taxa for nature management. In this study, we use an array of techniques to ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13756

    authors: Hernández-Roldán JL,Dapporto L,Dincă V,Vicente JC,Hornett EA,Šíchová J,Lukhtanov VA,Talavera G,Vila R

    更新日期:2016-09-01 00:00:00

  • Evidence for multiple introductions of Centaurea stoebe micranthos (spotted knapweed, asteraceae) to North America.

    abstract::Invasive species' success may depend strongly on the genetic resources they maintain through the invasion process. We ask how many introductions have occurred in the North American weed Centaurea stoebe micranthos (Asteraceae), and explore whether genetic diversity and population structure have changed as a result of ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294x.2008.03903.x

    authors: Marrs RA,Sforza R,Hufbauer RA

    更新日期:2008-10-01 00:00:00

  • Conservation of sex chromosomes in lacertid lizards.

    abstract::Sex chromosomes are believed to be stable in endotherms, but young and evolutionary unstable in most ectothermic vertebrates. Within lacertids, the widely radiated lizard group, sex chromosomes have been reported to vary in morphology and heterochromatinization, which may suggest turnovers during the evolution of the ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13635

    authors: Rovatsos M,Vukić J,Altmanová M,Johnson Pokorná M,Moravec J,Kratochvíl L

    更新日期:2016-07-01 00:00:00

  • Habitat fragmentation in coastal southern California disrupts genetic connectivity in the cactus wren (Campylorhynchus brunneicapillus).

    abstract::Achieving long-term persistence of species in urbanized landscapes requires characterizing population genetic structure to understand and manage the effects of anthropogenic disturbance on connectivity. Urbanization over the past century in coastal southern California has caused both precipitous loss of coastal sage s...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13176

    authors: Barr KR,Kus BE,Preston KL,Howell S,Perkins E,Vandergast AG

    更新日期:2015-05-01 00:00:00

  • Patterns of variability and gene flow in Medicago citrina, an endangered endemic of islands in the western Mediterranean, as revealed by amplified fragment length polymorphism (AFLP).

    abstract::Medicago citrina is an endangered western Mediterranean endemic that grows only on small islets of the Balearic archipelago and off the eastern Spanish coast. Only 10 isolated subpopulations are currently known (four from Ibiza, three from Cabrera, two from Columbretes and one from an offshore islet in northern Alican...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02289.x

    authors: Juan A,Crespo MB,Cowan RS,Lexer C,Fay MF

    更新日期:2004-09-01 00:00:00

  • Leveraging eDNA to expand the study of hybrid zones.

    abstract::Hybrid zones are important windows into ecological and evolutionary processes. Our understanding of the significance and prevalence of hybridization in nature has expanded with the generation and analysis of genome-spanning data sets. That said, most hybridization research still has restricted temporal and spatial res...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15514

    authors: Stewart KA,Taylor SA

    更新日期:2020-08-01 00:00:00

  • The impact of stocking on the genetic integrity of Arctic charr (Salvelinus) populations from the Alpine region.

    abstract::There is a long tradition of artificially stocking lakes and rivers with fish in the hope to increase the quality and amount of fish that can be harvested. The animals used for stocking often originate in distant hatcheries or hatcheries that breed fish from remote regions. This stocking practice could have effects on...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01498.x

    authors: Englbrecht CC,Schliewen U,Tautz D

    更新日期:2002-06-01 00:00:00

  • Genetic structuring and recent demographic history of red pandas (Ailurus fulgens) inferred from microsatellite and mitochondrial DNA.

    abstract::Clarification of the genetic structure and population history of a species can shed light on the impacts of landscapes, historical climate change and contemporary human activities and thus enables evidence-based conservation decisions for endangered organisms. The red panda (Ailurus fulgens) is an endangered species d...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05126.x

    authors: Hu Y,Guo Y,Qi D,Zhan X,Wu H,Bruford MW,Wei F

    更新日期:2011-07-01 00:00:00

  • A 6.5-kb intergenic structural variation enhances P450-mediated resistance to pyrethroids in malaria vectors lowering bed net efficacy.

    abstract::Elucidating the complex evolutionary armory that mosquitoes deploy against insecticides is crucial to maintain the effectiveness of insecticide-based interventions. Here, we deciphered the role of a 6.5-kb structural variation (SV) in driving cytochrome P450-mediated pyrethroid resistance in the malaria vector, Anophe...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15645

    authors: Mugenzi LMJ,Menze BD,Tchouakui M,Wondji MJ,Irving H,Tchoupo M,Hearn J,Weedall GD,Riveron JM,Cho-Ngwa F,Wondji CS

    更新日期:2020-11-01 00:00:00

  • Postglacial climate changes and rise of three ecotypes of harbour porpoises, Phocoena phocoena, in western Palearctic waters.

    abstract::Despite no obvious barriers to gene flow in the marine realm, environmental variation and ecological specializations can lead to genetic differentiation in highly mobile predators. Here, we investigated the genetic structure of the harbour porpoise over the entire species distribution range in western Palearctic water...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12817

    authors: Fontaine MC,Roland K,Calves I,Austerlitz F,Palstra FP,Tolley KA,Ryan S,Ferreira M,Jauniaux T,Llavona A,Öztürk B,Öztürk AA,Ridoux V,Rogan E,Sequeira M,Siebert U,Vikingsson GA,Borrell A,Michaux JR,Aguilar A

    更新日期:2014-07-01 00:00:00